Effect of Bacillus spp. on the composition of gut microbiota in early life stages of Indian white shrimp, Penaeus indicus

References

• Akhter, N., B. Wu, A. M. Memon, and M. Mohsin. 2015. Probiotics and prebiotics associated with aquaculture: A review. Fish and Shellfish Immunology 45 (2):733–41. doi:10.1016/j.fsi.2015.05.038.
   PubMed Web of Science ®Google Scholar
• Angthong, P., T. Uengwetwanit, S. Arayamethakorn, P. Chaitongsakul, N. Karoonuthaisiri, and W. Rungrassamee. 2020. Bacterial analysis in the early developmental stages of the black tiger shrimp (Penaeus monodon). Scientific Reports 10 (1):4896. doi:10.1038/s41598-020-61559-1.
   PubMed Web of Science ®Google Scholar
• Arrieta, M. C., L. T. Stiemsma, N. Amenyogbe, E. M. Brown, and B. Finlay. 2014. The intestinal microbiome in early life: Health and disease. Frontiers in Immunology 5:427. doi:10.3389/fimmu.2014.00427.
   PubMed Web of Science ®Google Scholar
• Balcázar, J., I. De Blas, I. Ruiz-Zarzuela, D. Cunningham, D. Vendrell, and J. Múzquiz. 2006. The role of probiotics in aquaculture. Veterinary Microbiology 114:173–86. doi:10.1016/j.vetmic.2006.01.009.
   PubMed Web of Science ®Google Scholar
• Bates, J. M., E. Mittge, J. Kuhlman, K. N. Baden, S. E. Cheesman, and K. Guillemin. 2006. Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation. Developmental Biology 297 (2):374–86. doi:10.1016/j.ydbio.2006.05.006.
   PubMed Web of Science ®Google Scholar
• Beyersmann, P. G., J. Tomasch, K. Son, R. Stocker, M. Göker, and I. Wagner-Döbler. 2017. Dual function of tropodithietic acid as antibiotic and signaling molecule in global gene regulation of the probiotic bacterium Phaeobacter inhibens. Scientific Reports 7 (1):730. doi:10.1038/s41598-017-00784-7.
   PubMedGoogle Scholar
• Bigalke, A., N. Meyer, A. Lydia Papanikolopoulou, K. H. Wiltshire, and G. Pohnerta. 2019. The algicidal bacterium Kordia algicida shapes a natural plankton community. Applied and Environmental Microbiology 85 (7):e02779–18. doi:10.1128/AEM.02779-18.
   PubMed Web of Science ®Google Scholar
• Dhariwal, A., J. Chong, S. Habib, I. L. King, L. B. Agellon, and J. Xia. 2017. MicrobiomeAnalyst: A web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data. Nucleic Acids Research 45 (W1):181–88. doi:10.1093/nar/gkx295.
   PubMed Web of Science ®Google Scholar
• Farzanfar, A. 2006. The use of probiotics in shrimp aquaculture. FEMS Immunol and Medical Microbiology 48 (2):149–58. doi:10.1111/j.1574-695X.2006.00116.x.
   PubMedGoogle Scholar
• Garibay‐Valdez, E., L. R. Martínez‐Córdova, F. Vargas‐Albores, T. Gollas‐Galván, A. Lago‐Leston, K. Calderón, and M. Martínez‐Porchas. 2018. Biofilm consumption shapes the intestinal microbiota of shrimp (Penaeus vannamei). Aquaculture Nutrition 25:427–35. doi:10.1111/anu.12868.
   Web of Science ®Google Scholar
• Garibay‑Valdez, E., L. R. Martínez‑Córdova, M. A. Ópez‑Torres, F. J. Almendariz‑Tapia, M. Martínez‑Porchas, and K. Calderón. 2020. The implication of metabolically active Vibrio spp. in the digestive tract of Litopenaeus vannamei for its post‑larval development. Scientific Reports 10 (1):11428. doi:10.1038/s41598-020-68222-9.
   PubMed Web of Science ®Google Scholar
• Hai, N. V. 2015. The use of probiotics in aquaculture. Journal of Applied Microbiology 119 (4):917–35. doi:10.1111/jam.12886.
   PubMed Web of Science ®Google Scholar
• Hernández-Rodríguez, A., C. Alceste-Oliviero, R. Sanchez, D. Jory, L. Vidal, and L. F. Constain-Franco. 2001. Aquaculture development trends in Latin America and the Caribbean. In R. P. Subasinghe, P. Bueno, M. J. Phillips, C. Hough, S. E. McGladdery, and J. R. Arthur, eds. Aquaculture in the Third Millennium. Technical Proceedings of the Conference on Aquaculture in the Third Millennium, Bangkok, Thailand, 20-25 February 2000. pp. 317–40. NACA, Bangkok and FAO, Rome.
   Google Scholar
• Holmstrom, C., and S. Kjelleberg. 1999. Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiology Ecology 30 (4):285–93. doi:10.1016/S0168-6496(99)00063-X.
   PubMed Web of Science ®Google Scholar
• Holt, C. C., D. Bass, G. D. Stentiford, and M. V. D. Giezen. 2020. Understanding the role of the shrimp gut microbiome in health and disease. Journal of Invertebrate Pathology 21:107387.
   Google Scholar
• Huynh, T. G., S. Y. Hu, C. S. Chiu, Q. P. Truong, and C. H. Liu. 2019. Bacterial population in intestines of white shrimp, Litopenaeus vannamei fed a synbiotic containing Lactobacillus plantarum and galactooligosaccharide. Aquaculture Research 50:807–17. doi:10.1111/are.13951.
   Web of Science ®Google Scholar
• Irianto, A., and B. Austin. 2002. Probiotics in Aquaculture. Journal of Fish Diseases 25 (11):633–42. doi:10.1046/j.1365-2761.2002.00422.x.
   Web of Science ®Google Scholar
• Karunasagar, I., R. Pai, G. R. Malathi, and I. Karunasagar. 1994. Mass mortality of Penaeus monodon larvae due to antibiotic-resistant Vibrio harveyi infection. Aquaculture 128 (3–4):203–09. doi:10.1016/0044-8486(94)90309-3.
   Web of Science ®Google Scholar
• Li, E., C. Xu, X. Wang, S. Wang, Q. Zhao, Z. Zhang, G. J. Qin, and L. Chen. 2018. Gut microbiota and its modulation for healthy farming of Pacific white shrimp Litopenaeus vannamei. Reviews in Fisheries Science and Aquaculture 26:381–99. doi:10.1080/23308249.2018.1440530.
   Web of Science ®Google Scholar
• Liu, F., G. Liu, and F. Li. 2016. Characterization of two pathogenic Photobacterium strains isolated from Exopalaemon carinicauda causing mortality of shrimp. Aquaculture 464:129–35. doi:10.1016/j.aquaculture.2016.06.019.
   Web of Science ®Google Scholar
• Liu, Z., L. Qiuqian, Z. Yao, W. L. Huang, J. Zheng, K. Wang, L. Li, and D. Zhang. 2018. Effects of commercial microbial agents on the bacterial communities in shrimp culture system. Frontiers in Microbiology 9:2403. doi:10.3389/fmicb.2018.02403.
   PubMed Web of Science ®Google Scholar
• Ma, X., B. Sun, and F. Zhu. 2018. Molecular cloning of Kuruma shrimp Marsupenaeus japonicus endonuclease-reverse transcriptase and its positive role in white spot syndrome virus and Vibrio alginolyticus infection. Fish and Shellfish Immunology 73:297–98. doi:10.1016/j.fsi.2017.12.031.
   PubMed Web of Science ®Google Scholar
• Metian, M., M. Troell, V. Christensen, J. Steenbeek, and S. Pouil. 2020. Mapping diversity of species in global aquaculture. Reviews in Aquaculture 12 (2):1090–100. doi:10.1111/raq.12374.
   Web of Science ®Google Scholar
• Nupur, V. B., N. R. Tanuku, and A. K. Pinnaka. 2015. Albirhodobacter marinus gen.nov.sp.nov.a member of the family Rhodobacteraceae isolated from sea shore water of Vishakapatnam. India. Antonie Van Leeuwenhock 103 (2):347–55. doi:10.1007/s10482-012-9814-z.
   Web of Science ®Google Scholar
• Patil, P. K., T. N. Vinay, S. D. Ghate, V. Baskaran, and S. Avunje. 2021. 16 S rRNA gene diversity and gut microbial composition of the Indian white shrimp (Penaeus indicus). Antonie van Leeuwenhoek. https://doi.org/10.1007/s10482-021-01658-9.
   Google Scholar
• Qi, C., L. Wang, K. Jiang, M. Wang, W. Zhao, and B. Wang. 2017. Transcriptomic and morphological analyses of Litopenaeus vannamei intestinal barrier in response to Vibrio paraheamolyticus infection reveals immune response signatures and structural disruption. Fish and Shellfish Immunology 70:437–50. doi:10.1016/j.fsi.2017.09.004.
   PubMed Web of Science ®Google Scholar
• Ramírez, C., and J. Romero. 2017. Fine flounder (Paralichthys adspersus) microbiome showed important differences between wild and reared specimens. Frontiers in Microbiology 8:271. doi:10.3389/fmicb.2017.00271.
   PubMed Web of Science ®Google Scholar
• Reid, G., M. E. Sanders, H. R. Gaskins, G. R. Gibson, A. Mercenier, R. Rastall, M. Roberfroid, I. Rowland, C. Cherbut, and T. R. Klaenhammer. 2003. New scientific paradigms for probiotics and prebiotics. Journal Clinical Gastroenterology 37 (2):105–18. doi:10.1097/00004836-200308000-00004.
   PubMed Web of Science ®Google Scholar
• Sanders, M. 2008. Probiotics: Definition, sources, selection, and uses. Clinical Infectious Diseases 46 (s2):58–61. doi:10.1086/523341.
   PubMedGoogle Scholar
• Schloss, P. D., S. L. Westcott, T. Ryabin, J. R. Hall, M. Hartmann, and E. B. Hollister. 2009. Introducing Mothur: Open-source. Platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 75 (23):7537–41. doi:10.1128/AEM.01541-09.
   PubMed Web of Science ®Google Scholar
• Sha, Y., M. Liu, B. Wang, K. Jiang, C. Qi, and L. Wang. 2016. Bacterial population in intestines of Litopenaeus vannamei fed different probiotics or probiotic supernatant. Journal of Microbiology and Biotechnology 26 (10):1736–45. doi:10.4014/jmb.1603.03078.
   PubMed Web of Science ®Google Scholar
• Sorokin, D. Y. 1992. Catenococcus thiocyclus gen. nov. sp. nov. - a new facultatively anaerobic bacterium from a near-shore sulphidic hydrothermal area. Journal of General Microbiology 138 (11):2287–92. doi:10.1099/00221287-138-11-2287.
   Google Scholar
• Tamburini, S., N. Shen, H. C. Wu, and J. C. Clemente. 2016. The microbiome in early life: Implications for health outcomes. Nature Medicine 22 (7):713–22. doi:10.1038/nm.4142.
   PubMed Web of Science ®Google Scholar
• Thompson, J., S. Gregory, S. Plummer, R. J. Shields, and A. F. Rowley. 2010. An in vitro and in vivo assessment of the potential of Vibrio spp. as probiotics for the Pacific white shrimp, Litopenaeus vannamei. Journal of Applied Microbiology 109 (4):1177–87. doi:10.1111/j.1365-2672.2010.04743.x.
   PubMed Web of Science ®Google Scholar
• Vargas‑Albores, F., M. A. Porchas‑Cornejo, M. Martinez‑Porchas, E. Villalpando‑Canchola, T. Gollas‑Galvan, and L. R. Martinez‑Cordova. 2017. Bacterial biota of shrimp intestine is significantly modified by the use of a probiotic mixture: A high throughput sequencing approach. Helgoland Marine Research 71 (1):5. doi:10.1186/s10152-017-0485-z.
   Google Scholar
• Velázquez-Lizárraga, A. E., J. L. Juárez-Morales, I. S. Racotta, H. Villarreal-Colmenares, O. Valdes-Lopez, A. Luna-González, C. Rodríguez-Jaramillo, N. Estrada, and F. Ascencio. 2019. Transcriptomic analysis of Pacific white shrimp (Litopenaeus vannamei, Boone 1931) in response to acute hepatopancreatic necrosis disease caused by Vibrio parahaemolyticus Vibrio parahaemolyticus. PLoS ONE 14 (8):e0220993. doi:10.1371/journal.pone.0220993.
   PubMed Web of Science ®Google Scholar
• Vijayan, K. K. 2019. Domestication and genetic improvement of Indian white shrimp, Penaeus indicus; a complementary native option to exotic Pacific white shrimp, Penaeus vannamei. Journal of Coastal Research 86:270–76. doi:10.2112/SI86-040.1.
   Google Scholar
• Wang, R., Z. Guo, Y. Tang, J. Kuang, Y. Duan, H. Lin, S. Jiang, H. Shu, and J. Huang. 2020. Effects on development and microbial community of shrimp Litopenaeus vannamei larvae with probiotics treatment. AMB Express 10:109. doi:10.1186/s13568-020-01041-3.
   PubMed Web of Science ®Google Scholar
• Zheng, Y., M. Yua, Y. Liu, Y. Sua, T. Xub, M. Yub, and X. H. Zhang. 2016. Comparison of cultivable bacterial communities associated with Pacific white shrimp (Litopenaeus vannamei) larvae at different health statuses and growth stages. Aquaculture 451:163–69. doi:10.1016/j.aquaculture.2015.09.020.
   Web of Science ®Google Scholar