Screening of a Xylanase Clone from a Fosmid Library of Rumen Microbiota in Hu Sheep

REFERENCES

• Joseleau JP , Comtat J , Ruel K . Chemical structure of xylans and their interaction in the plant cell walls . In Xylans and Xylanases, Progress in Biotechnology; vol. 7, Visser J , Beldman G , Kusters L , Someren MA van , Voragen AGJ , Eds.; New York , Elsevier , 1992 ; 1 – 16 .
   Google Scholar
• Biely P , Puls J , Schneider H . Acetyl xylan esterases in fungal cellulolytic systems . FEBS Lett 1985 : 186 : 80 – 84 .
   Web of Science ®Google Scholar
• Uffen RL . Xylan degradation: a glimpse at microbial diversity . J Ind Microbiol Biotechnol 1997 ; 19 : 1 – 6 .
   Web of Science ®Google Scholar
• Dashek WV . Methods in Plant Biochemistry and Molecular Biology . Boca Raton , Florida : CRC Press 1997 : 313 .
   Google Scholar
• Battan B , Sharma J , Dhiman SS , Kuhad RC . Enhanced production of cellulase-free thermostable xylanase by Bacillus pumilus ASH and its potential application in paper industry . Enzyme Microb Technol 2007 ; 41 : 733 – 739 .
   Web of Science ®Google Scholar
• Denstadli V , Westereng B , Biniyam HG , Balance S , Knutsen SH , Svihus B . Effects of structure and xylanase treatment of brewers’ spent grain on performance and nutrient availability in broiler chickens . Br Poult Sci 2010 ; 51 : 419 – 426 .
   PubMed Web of Science ®Google Scholar
• Eun JS , Beauchemin KA , Schulze H . Use of exogenous fibrolytic enzymes to enhance in vitro fermentation of alfalfa hay and corn silage . J Dairy Sci 2007 ; 90 : 1440 – 1451 .
   PubMed Web of Science ®Google Scholar
• Kulkarni N , Shendye A , Rao M . Molecular and biotechnological aspects of xylanases . FEMS Microbiol Rev 1999 ; 23 : 411 – 456 .
   PubMed Web of Science ®Google Scholar
• Edwards JE , McEwan NR , Travis AJ , Wallace RJ . 16S rDNA library-based analysis of ruminal bacterial diversity . Antonie van Leeuwenhoek 2004 ; 3 : 263 – 281 .
   Google Scholar
• Morrison M , Adams SE , Nelson KE , Attwood GT . Metagenomic analysis of the microbiomes in ruminants and other herbivores . In Methods in Gut Microbial Ecology for Ruminants ; HPS Makkar , CS McSweeney , Eds.; Netherlands , Springer , 2005 : 209 – 220 .
   Google Scholar
• Hu Y , Zhang G , Li A , Chen J , Ma L . Cloning and enzymatic characterization of a xylanase gene from a soil-derived metagenomic library with an efficient approach . Appl Microbiol Biotechnol 2008 ; 80 : 823 – 830 .
   PubMed Web of Science ®Google Scholar
• Warnecke F , Luginbühl P , Ivanova N , Ghassemian M , Richardson TH , Stege JT , Cayouette M , McHardy AC , Djordjevic G , Aboushadi N , Sorek R , Tringe SG , Podar M , Martin HG , Kunin V , Dalevi D , Madejska J , Kirton E , Platt D , Szeto E , Salamov A , Barry K , Mikhailova N , Kyrpides NC , Matson EG , Ottesen EA , Zhang X , Hernández M , Murillo C , Acosta LG , Rigoutsos I , Tamayo G , Green BD , Chang C , Rubin EM , Mathur EJ , Robertson DE , Hugenholtz P , Leadbetter JR . Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite . Nature 2007 ; 450 : 560 – 565 .
   PubMed Web of Science ®Google Scholar
• Mo X , Chen C , Pang H , Feng Y , Feng J . Identification and characterization of a novel xylanase derived from a rice straw degrading enrichment culture . Appl Microbiol Biotechnol 2010 ; 87 : 2137 – 2146 .
   PubMed Web of Science ®Google Scholar
• Li R , Kibblewhite R , Orts WJ , Lee CC . Molecular cloning and characterization of multidomain xylanase from manure library . World J Microbiol Biotechnol 2009 ; 25 : 2071 – 2078 .
   Web of Science ®Google Scholar
• Wang JK , An PP , Chen ZM , Ye JA , Liu JX . Construction and analysis of fosmid library of rumen microbiota of Hu sheep . Chinese J Anim Nutr 2010 ; 22 : 341 – 345 .
   Google Scholar
• Sambrook J , Russell DW . Molecular Cloning: A Laboratory Manual, , vols. 1–3 , 3rd ed. , Cold Spring Harbor , New York : Cold Spring Harbor Laboratory Press . 2001 .
   Google Scholar
• Altschul SF , Madden TL , Schaffer AA , Zhang J , Zhang Z , Miller W , Lipman DJ . Gapped BLAST and PSI-BLAST: a new generation of protein database search programs . Nucleic Acids Res 1997 ; 25 : 3389 – 3402 .
   PubMed Web of Science ®Google Scholar
• Marchler-Bauer A , Lu S , Anderson JB , Chitsaz F , Derbyshire MK , DeWeese-Scott C , Fong JH , Geer LY , Geer RC , Gonzales NR , Gwadz M , Hurwitz DI , Jackson JD , Ke Z , Lanczycki CJ , Lu F , Marchler GH , Mullokandov M , Omelchenko MV , Robertson CL , Song JS , Thanki N , Yamashita RA , Zhang D , Zhang N , Zheng C , Bryant SH . CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 2011; 39:D225–D229.
   PubMed Web of Science ®Google Scholar
• Finn RD , Mistry J , Tate J , Coggill P , Heger A , Pollington JE , Gavin OL , Gunesekaran P , Ceric G , Forslund K , Holm L , Sonnhammer EL , Eddy SR , Bateman A . The Pfam protein families database . Nucleic Acids Res 2010 ; 38 : D211 – 222 .
   PubMed Web of Science ®Google Scholar
• Kanehisa M , Goto S , Kawashima S , Okuno Y , Hattori M . The KEGG resource for deciphering the genome . Nucleic Acids Res 2004 ; 32 : D277 – D280 .
   PubMed Web of Science ®Google Scholar
• Boraston AB , Bolam DN , Gilbert HJ , Davies GJ . Carbohydrate-binding modules: fine-tuning polysaccharide recognition . Biochem J 2004 ; 382 : 769 – 781 .
   PubMed Web of Science ®Google Scholar
• Laemmli UK . Cleavage of structural protein during the assembly of the head of bacteriophage T4 . Nature 1970 ; 227 : 680 – 685 .
   PubMed Web of Science ®Google Scholar
• Bradford MM . A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding . Anal Biochem 1976 ; 72 : 248 – 254 .
   PubMed Web of Science ®Google Scholar
• Bailey MJ , Biely P , Poutanen K . Interlaboratory testing of methods for assay of xylanase activity . J Biotechnol 1992 ; 23 : 257 – 270 .
   Web of Science ®Google Scholar
• SAS, 1999. Version 8.0 SAS Inst Inc., Cary, NC, USA.
   Google Scholar
• Bastawde KB . Xylan structure, microbial xylanase, and their mode of action . World J Microbiol Biotechnol 1992 ; 8 : 353 – 368 .
   PubMed Web of Science ®Google Scholar
• Wong KKY , Tan LUL , Sadler JN . Multiplicity of b-1,4-xylanase in microorganisms: functions and applications . Microbiol Rev 1988 ; 52 : 305 – 317 .
   PubMedGoogle Scholar
• Duarte JC , Costa-Ferreira M . Aspergilli and lignocellulosics: enzymology and biotechnical applications . FEMS Microbiol Rev 1994 ; 13 : 377 – 386 .
   PubMed Web of Science ®Google Scholar
• Kulkarni N , Shendye A , Rao M . Molecular and biotechnological aspects of xylanases . FEMS Microbiol Rev 1999 ; 23 : 411 – 456 .
   PubMed Web of Science ®Google Scholar
• Henrissat B , Bairoch A . New families in the classification of glycosyl hydrolases based on amino acid sequence similarities . Biochem J 1993 ; 293 : 781 – 788 .
   PubMed Web of Science ®Google Scholar
• Henrissat B , Davies G . Structural and sequence-based classification of glycoside hydrolases . Curr Opin Struct Biol 1997 ; 7 : 637 – 644 .
   PubMed Web of Science ®Google Scholar
• Gilbert HJ , Hazlewood GP . Bacterial cellulases and xylanases . J General Microbiol 1993 ; 139 : 187 – 194 .
   Google Scholar
• Tan LUL , Wong KKY , Saddler J . Functional characteristics of two D-xylanases purified from Trichoderma harzianum . Enzyme Microbiol Technol 1985 ; 7 : 431 – 436 .
   Web of Science ®Google Scholar
• Saraswat V , Bisaria VS . Purification, characterization and substrate specificities of xylanase isoenzymes from Melanocarpus albomyces IIS 68 . Biosci Biotechnol Biochem 2000 ; 64 : 173 – 1180 .
   PubMedGoogle Scholar
• Zhang HL , Yao B , Yuan TZ , Wang YR , Cao SS , Fan YL . Purification and properties of 43 kD xylanase XYNA from Streptomyces olivaceoviridis A1 . J Agric Biotech (Chinese) 2002 ; 10 : 10 – 14 .
   Google Scholar