Identification of Differentially Expressed Genes and Pathways for Myofiber Characteristics in Soleus Muscles between Chicken Breeds Differing in Meat Quality

References

• Jiang XS, Groen AF. Chicken breeding with local breeds in China. Asian-Australas J Anim Sci 2000; 13:1482–1498.
   Web of Science ®Google Scholar
• China National Commission of Animal Genetic Resources. Animal genetic resources in China Poultry, 1st ed. Beijing, China: China Agriculture Press; 2011.
   Google Scholar
• Shu JT, Xu WJ, Zhang M, et al. Transcriptional co-activator PGC-1α gene is associated with chicken skeletal muscle fiber types. Genet Mol Res 2014; 13:895–905.
   PubMed Web of Science ®Google Scholar
• Vieira SL, Angel CR. Optimizing broiler performance using different amino acid density diets: What are the limits? J Appl Poultry Res 2012; 21:149–155.
   Web of Science ®Google Scholar
• Matsakas A, Patel K. Skeletal muscle fibre plasticity in response to selected environmental and physiological stimuli. Histol Histopathol 2009; 24:611–629.
   PubMed Web of Science ®Google Scholar
• Choi YM Kim BC. Muscle fiber characteristics, myofibrillar protein isoforms, and meat quality. Livestock Sci 2009; 122:105–118.
   Web of Science ®Google Scholar
• Karlsson AH, Klont RE, Fernandez X. Skeletal muscle fibres as factors for pork quality. Livestock Prod Sci 1999; 60:255–269.
   Google Scholar
• Pette D, Staron RS. Transitions of muscle fiber phenotypic profiles. Histochem Cell Biol 2001; 115:359–372.
   PubMed Web of Science ®Google Scholar
• Yuan Y, Liu YG, Shi XE, Yang GS. Signaling pathways in skeletal muscle fiber-type transition. Chin J Biochem Mol Biol 2010; 26:796–801.
   Google Scholar
• Khan MA. Histochemical sub-types of three fibre-types of avian skeletal muscle. Histochemistry 1976; 50:9–16.
   PubMedGoogle Scholar
• Pannier L, Mullen AM, Hamill RM, Stapleton PC, Sweeney T. Association analysis of single nucleotide polymorphisms in DGAT1, TG and FABP4 genes and intramuscular fat in crossbred Bos taurus cattle. Meat Sci 2010; 85:515–518.
   PubMed Web of Science ®Google Scholar
• Raj S, Skiba G, Weremko D, Fandrejewski H, Migdal W, Boroweic F, Polawska E. The relationship between the chemical composition of the carcass and the fatty acid composition of intramuscular fat and backfat of several pig breeds slaughtered at different weights. Meat Sci 2010; 86:324–330.
   PubMed Web of Science ®Google Scholar
• Duggan DJ, Bittner M, Chen YD, Meltzer P, Trent JM. Expression profiling using cDNA microarrays. Nature Gen 1999; 21:10–14.
   PubMed Web of Science ®Google Scholar
• Jiang Y, Shang H, Xu H, et al. Detection and genotyping of porcine circovirus in naturally infected pigs by oligo-microarray. Res Vet Sci 2010; 89:133–139.
   PubMed Web of Science ®Google Scholar
• Paturi G, Phillips M, Kailasapathy K. Comparison of functional assay and microarray analysis for determination of Lactobacillus acidophilus LAFTI L10 induced gut immune responses in mice. Food Res Int 2010; 43:856–861.
   Web of Science ®Google Scholar
• Wei L, Lijuan H, Dan L. Microarray analysis of differently expressed microRNA profiles induced by UVB irradiated in mice skin. J Investig Dermatol 2010; 130:S132–S132.
   Google Scholar
• Wu T, Zhang ZH, Yuan ZQ, et al. Distinctive genes determine different intramuscular fat and muscle fiber ratios of the longissimus dorsi muscles in Jinhua and Landrace pigs. PLoS ONE 2013; 8:e53181.
   PubMed Web of Science ®Google Scholar
• Li Y, Xu Z, Li H, Xiong Y, Zuo B. Differential transcriptional analysis between red and white skeletal muscle of Chinese Meishan pigs. Int J Biol Sci 2010; 6:350–360.
   PubMed Web of Science ®Google Scholar
• Wegner J, Albrecht E, Fiedler I, Teuscher F, Papstein HJ, Ender K. Growth- and breed-related changes of muscle fiber characteristics in cattle. J Anim Sci 2000; 78:1485–1496.
   PubMed Web of Science ®Google Scholar
• Wang HY, Liu RR, Zhao GP, Zheng MQ, Li QH, Li P, Liu L, Wen J. Identification of reference genes by Real-time quantitative PCR and western blot in chicken muscle tissues. Acta Veterinaria et Zootechnica Sinica 2015; 46(7):1107–1113.
   Google Scholar
• Livak KJ, Schmittgen TD. Analysis of relative gene expression data usingreal-time quantitative PCR and the 2(T)(-Delta Delta C) method. Methods 2001; 25:402–408.
   PubMed Web of Science ®Google Scholar
• Dransfield E, Sosnicki AA. Relationship between muscle growth and poultry meat quality. Poultry Sci 1999; 78:743–746.
   PubMed Web of Science ®Google Scholar
• Rehfeldt C, Kuhn G. Consequences of birth weight for postnatal growth performance and carcass quality in pigs as related to myogenesis. J Anim Sci 2006; 84:113–123.
   PubMedGoogle Scholar
• Renand G, Picard B, Touraille C, Berge P, Lepetit J. Relationships between muscle characteristics and meat quality traits of young Charolais bulls. Meat Sci 2001; 59:49–60.
   PubMed Web of Science ®Google Scholar
• Wang HB, Li H, Wang QG, et al. Profiling of chicken adipose tissue gene expression by genome array. BMC Genomics 2007; 27:193–207.
   Web of Science ®Google Scholar
• Sibut V, Hennequet-Antier C, Le Bihan-Duval E, Marthey S, Duclos MJ, Berri C. Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality. BMC Genom 2011; 12:112.
   PubMed Web of Science ®Google Scholar
• Ye YQ, Lin SM, Mu HP, et al. Analysis of differentially expressed genes and signaling pathways related to intramuscular fat deposition in skeletal muscle of sex-linked dwarf chickens. BioMed Res Int 2014; 2014:724274. doi:10.1155/2014/724274.
   PubMed Web of Science ®Google Scholar
• Cui HX, Liu RR, Zhao GP, et al. Identification of differentially expressed genes and pathways for intramuscular fat deposition in pectoralis major tissues of fast-and slow-growing chickens. BMC Genom 2012; 13:213.
   PubMed Web of Science ®Google Scholar
• Zhang J, Zhou CW, Ma JD, et al. Breed, sex and anatomical location-specific gene expression profiling of the porcine skeletal muscles. BMC Gen 2013; 14:53.
   PubMed Web of Science ®Google Scholar
• Lehnert SA, Reverter A, Byrne KA, et al. Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds. BMC Dev Biol 2007; 7:95.
   PubMed Web of Science ®Google Scholar
• Vidal-Puig A, Solanes G, Grujic D, Flier JS, Lowell BB. UCP3: an uncoupling protein homologue expressed preferentially and abundantly in skeletal muscle and brown adipose tissue. Biochem Biophys Res Commun 1997; 235:79–82.
   PubMed Web of Science ®Google Scholar
• Louis M, Van Beneden R, Dehoux M, Thissen JP, Francaux M. Creatine increases IGF-I and myogenic regulatory factor mRNA in C2C12cells. FEBS Lett 200; 557:243–247.
   Google Scholar
• Cagnazzo M, Te Pas MF, Priem J, et al. Comparison of prenatal muscle tissue expression profiles of two pig breeds differing in muscle characteristics. J Anim Sci 2006; 84:1–10.
   PubMed Web of Science ®Google Scholar
• Evans RM, Barish GG, Wang YX. PPARs and complex journey to obesity. Nature Med 2004; 10:355–361.
   PubMed Web of Science ®Google Scholar
• Arany Z, Lebrasseur N, Morris C, Smith E, Yang W, Ma Y, Chin S, Spiegelman BM. The Transcriptional Coactivator PGC-1b Drives the Formation of Oxidative Type IIX Fibers in Skeletal Muscle. Cell Metabolism. 2007; 5:35–46.
   PubMed Web of Science ®Google Scholar
• Consilvio C, Vincent AM, Feldman EL. Neuroinflammation, COX-2, and ALS-a dual role? Experim Neurol 2004; 187:1–10.
   PubMed Web of Science ®Google Scholar
• Nabeshima Y, Hanaoka K, Hayasaka M, Esuml E, Li S, Nonaka I. Myogenin gene disruption results in perinatal lethality because of severe muscle defect. Nature 1993; 364:532–535.
   PubMed Web of Science ®Google Scholar
• Kwon TJ, Oh SK, Park HJ, et al. The effect of novel mutations on the structure and enzymatic activity of unconventional myosins associated with autosomal dominant non-syndromic hearing loss. Open Biol 2014; 4:140107.
   PubMed Web of Science ®Google Scholar
• Yu HY, Fujii N, Hirshman MF, Pomerleau JM, Goodyear LJ. Cloning and characterization of mouse 50-AMP-activated protein kinase gamma 3 subunit. Am J Physiol–Cell Physiol 2004; 286:C283–C292.
   PubMedGoogle Scholar
• McBride A, Ghilagaber S, Nikolaev A, Hardie DG. The glycogen-binding domain on the AMPK beta subunit allows the kinase to act as a glycogen sensor. Cell Metabol 2009; 9:23–34.
   PubMed Web of Science ®Google Scholar
• Anakwe K, Robson L, Hadley J, et al. Wnt signaling regulates myogenic differentiation in the developing avian wing. Development 2003; 130:3503–3514.
   PubMed Web of Science ®Google Scholar
• Chiou MJ, Wang YD, Kuo CM, Chen JC, Chen JY. Functional analysis of mitogen-activated protein kinase-3 (MAPK3) and its regulation of the promoter region in zebrafish. DNA Cell Biol 2007; 26(11):781–790.
   PubMed Web of Science ®Google Scholar
• Pagès G, Guérin S, Grall D, et al. Defective thymocyte maturation in p44 MAP kinase (Erk 1) knockout mice. Science 1999; 286(5443):1374–1377.
   PubMed Web of Science ®Google Scholar
• Reid MB. Response of the ubiquitin-proteasome pathway to changes in muscle activity. Am J Physiol 2005; 288:R1423–R1431.
   Google Scholar