Identification of microRNA transcriptome throughout the lifespan of yak (Bos grunniens) corpus luteum

References

• Bachelot A, Binart N. Corpus luteum development: lessons from genetic models in mice. Curr Top Dev Biol. 2005;68:49–84.
   PubMed Web of Science ®Google Scholar
• Kfir S, Basavaraja R, Wigoda N, Ben-Dor S, Orr I, Meidan R. Genomic profiling of bovine corpus luteum maturation. PLOS One. 2018;13(3):e0194456.
   PubMed Web of Science ®Google Scholar
• Smith MF, McIntush EW, Smith GW. Mechanisms associated with corpus luteum development. J Anim Sci. 1994;72(7):1857–1872.
   PubMed Web of Science ®Google Scholar
• Devoto L, Kohen P, Munoz A, Strauss JF. 3rd. Human corpus luteum physiology and the luteal-phase dysfunction associated with ovarian stimulation. Reprod Biomed Online. 2009;18(Suppl 2):19–24.
   PubMed Web of Science ®Google Scholar
• Devoto L, Henriquez S, Kohen P, Strauss JF. 3rd. The significance of estradiol metabolites in human corpus luteum physiology. Steroids. 2017;123:50–54.
   PubMed Web of Science ®Google Scholar
• Wuttke W, Theiling K, Hinney B, Pitzel L. Regulation of steroid production and its function within the corpus luteum. Steroids. 1998;63(5–6):299–305.
   PubMed Web of Science ®Google Scholar
• Skarzynski DJ, Ferreira-Dias G, Okuda K. Regulation of luteal function and corpus luteum regression in cows: hormonal control, immune mechanisms and intercellular communication. Reprod Domest Anim. 2008;43 Suppl 2:57–65.
   PubMed Web of Science ®Google Scholar
• Niswender GD, Juengel JL, Silva PJ, Rollyson MK, McIntush EW. Mechanisms controlling the function and life span of the corpus luteum. Physiol Rev. 2000;80(1):1–29.
   PubMed Web of Science ®Google Scholar
• Ziecik AJ, Przygrodzka E, Jalali BM, Kaczmarek MM. Regulation of the porcine corpus luteum during pregnancy. Reproduction. 2018;156(3):R57–R67.
   PubMed Web of Science ®Google Scholar
• Magata F, Shirasuna K, Struve K, et al. Gene expressions in the persistent corpus luteum of postpartum dairy cows: distinct profiles from the corpora lutea of the estrous cycle and pregnancy. J Reprod Dev. 2012;58(4):445–452.
   PubMed Web of Science ®Google Scholar
• Stocco C, Telleria C, Gibori G. The molecular control of corpus luteum formation, function, and regression. Endocr Rev. 2007;28(1):117–149.
   PubMed Web of Science ®Google Scholar
• Curlewis JD, Tam SP, Lau P, et al. A prostaglandin f(2alpha) analog induces suppressors of cytokine signaling-3 expression in the corpus luteum of the pregnant rat: a potential new mechanism in luteolysis. Endocrinology. 2002;143(10):3984–3993.
   PubMed Web of Science ®Google Scholar
• Choi J, Jo M, Lee E, Choi D. The role of autophagy in corpus luteum regression in the rat. Biol Reprod. 2011;85(3):465–472.
   PubMed Web of Science ®Google Scholar
• Jiang YF, Hsu MC, Cheng CH, Tsui KH, Chiu CH. Ultrastructural changes of goat corpus luteum during the estrous cycle. Anim Reprod Sci. 2016;170:38–50.
   PubMed Web of Science ®Google Scholar
• Vishnoi A, Rani S. MiRNA biogenesis and regulation of diseases: an overview. Methods Mol Biol. 2017;1509:1–10.
   PubMedGoogle Scholar
• Cai Y, Yu X, Hu S, Yu J. A brief review on the mechanisms of miRNA regulation. Genomics Proteomics Bioinformatics. 2009;7(4):147–154.
   PubMedGoogle Scholar
• Hausser J, Syed AP, Bilen B, Zavolan M. Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation. Genome Res. 2013;23(4):604–615.
   PubMed Web of Science ®Google Scholar
• Ivashchenko A, Berillo O, Pyrkova A, Niyazova R. Binding sites of miR-1273 family on the mRNA of target genes. Biomed Res Int. 2014;2014:620530.
   PubMed Web of Science ®Google Scholar
• Otsuka M, Zheng M, Hayashi M, et al. Impaired microRNA processing causes corpus luteum insufficiency and infertility in mice. J Clin Invest. 2008;118(5):1944–1954.
   PubMed Web of Science ®Google Scholar
• Jerome A, Thirumaran SMK, Kala SN. Identification of microRNAs in corpus luteum of pregnancy in buffalo (Bubalus bubalis) by deep sequencing. Iran J Vet Res. 2017;18(4):287–290.
   PubMed Web of Science ®Google Scholar
• Gecaj RM, Schanzenbach CI, Kirchner B, et al. The dynamics of microRNA transcriptome in bovine corpus luteum during its formation, function, and regression. Front Genet. 2017;8:213.
   PubMed Web of Science ®Google Scholar
• Maalouf SW, Liu WS, Albert I, Pate JL. Regulating life or death: potential role of microRNA in rescue of the corpus luteum. Mol Cell Endocrinol. 2014;398(1–2):78–88.
   PubMed Web of Science ®Google Scholar
• Maalouf SW, Smith CL, Pate JL. Changes in microRNA expression during maturation of the bovine corpus luteum: regulation of luteal cell proliferation and function by microRNA-34a. Biol Reprod. 2016;94(3):71.
   PubMed Web of Science ®Google Scholar
• Xu MQ, Jiang H, Zhang LQ, et al. MiR-29b affects the secretion of PROG and promotes the proliferation of bovine corpus luteum cells. PLOS One. 2018;13(4):e0195562.
   PubMed Web of Science ®Google Scholar
• Farberov S, Meidan R. Fibroblast growth factor-2 and transforming growth factor-beta1 oppositely regulate miR-221 that targets thrombospondin-1 in bovine luteal endothelial cells. Biol Reprod. 2018;98(3):366–375.
   PubMed Web of Science ®Google Scholar
• Prakash BS, Sarkar M, Mondal M. An update on reproduction in yak and mithun. Reprod Domest Anim. 2008;43 Suppl 2:217–223.
   PubMed Web of Science ®Google Scholar
• Lan D, Xiong X, Huang C, Mipam TD, Li J. Toward understanding the genetic basis of yak ovary reproduction: a characterization and comparative analyses of estrus ovary transcriptiome in yak and cattle. PLOS One. 2016;11(4):e0152675.
   PubMed Web of Science ®Google Scholar
• Zhang Q, Wang Q, Zhang Y, et al. Comprehensive analysis of microRNA(–)messenger RNA from white yak testis reveals the differentially expressed molecules involved in development and reproduction. Int J Mol Sci. 2018;19(10):3083.
   Web of Science ®Google Scholar
• Zhao W, Quansah E, Yuan M, et al. Next-generation sequencing analysis reveals segmental patterns of microRNA expression in yak epididymis. Reprod Fertil Dev. 2020;32(12):1067–1083.
   PubMed Web of Science ®Google Scholar
• Xie J, Kalwar Q, Yan P, Guo X. Effect of concentrate supplementation on the expression profile of miRNA in the ovaries of yak during non-breeding season. Animals. 2020;10(9):1640.
   Web of Science ®Google Scholar
• Yao Y, Niu J, Sizhu S, et al. microRNA-125b regulates apoptosis by targeting bone morphogenetic protein receptor 1B in yak granulosa cells. DNA Cell Biol. 2018;37(11):878–887.
   PubMed Web of Science ®Google Scholar
• Berisha B, Schams D, Rodler D, Sinowatz F, Pfaffl MW. Expression and localization of members of the thrombospondin family during final follicle maturation and corpus luteum formation and function in the bovine ovary. J Reprod Dev. 2016;62(5):501–510.
   PubMed Web of Science ®Google Scholar
• Berisha B, Schams D, Rodler D, Sinowatz F, Pfaffl MW. Expression pattern of HIF1alpha and vasohibins during follicle maturation and corpus luteum function in the bovine ovary. Reprod Dom Anim. 2017;52(1):130–139.
   PubMed Web of Science ®Google Scholar
• Rekawiecki R, Rutkowska J, Kotwica J. Identification of optimal housekeeping genes for examination of gene expression in bovine corpus luteum. Reprod Biol. 2012;12(4):362–367.
   PubMed Web of Science ®Google Scholar
• Gallego Romero I, Pai AA, Tung J, Gilad Y. RNA-seq: impact of RNA degradation on transcript quantification. BMC Biol. 2014;12:42.
   PubMed Web of Science ®Google Scholar
• Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998;8(3):175–185.
   PubMed Web of Science ®Google Scholar
• Liu X, Jin DY, McManus MT, Mourelatos Z. Precursor microRNA-programmed silencing complex assembly pathways in mammals. Mol Cell. 2012;46(4):507–517.
   PubMed Web of Science ®Google Scholar
• Altermann E, Klaenhammer TR. PathwayVoyager: pathway mapping using the Kyoto encyclopedia of genes and genomes (KEGG) database. BMC Genomics. 2005;6:60.
   PubMed Web of Science ®Google Scholar
• Reynolds LP, Redmer DA. Growth and development of the corpus luteum. J Reprod Fertil Suppl. 1999;54:181–191.
   PubMedGoogle Scholar
• Dai L, Xu J, Liu S, et al. Characterization of miR-126-3p and its target talin2 in the bovine corpus luteum during the oestrus cycle. Reprod Dom Anim. 2014;49(6):913–919.
   PubMed Web of Science ®Google Scholar
• Jin W, Grant JR, Stothard P, Moore SS, Guan LL. Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol Biol. 2009;10:90.
   PubMed Web of Science ®Google Scholar
• Zhong T, Hu J, Xiao P, et al. Identification and characterization of microRNAs in the goat (Capra hircus) rumen during embryonic development. Front Genet. 2017;8:163.
   PubMed Web of Science ®Google Scholar
• Shi B, Gao W, Wang J. Sequence fingerprints of microRNA conservation. PLOS One. 2012;7(10):e48256.
   PubMed Web of Science ®Google Scholar
• Mohammed BT, Sontakke SD, Ioannidis J, Duncan WC, Donadeu FX. The adequate corpus luteum: miR-96 promotes luteal cell survival and progesterone production. J Clin Endocrinol Metab. 2017;102(7):2188–2198.
   PubMed Web of Science ®Google Scholar
• Becker S, von Otte S, Robenek H, Diedrich K, Nofer JR. Follicular fluid high-density lipoprotein-associated sphingosine 1-phosphate (S1P) promotes human granulosa lutein cell migration via S1P receptor type 3 and small G-protein RAC1. Biol Reprod. 2011;84(3):604–612.
   PubMed Web of Science ®Google Scholar
• Donadeu FX, Sanchez JM, Mohammed BT, et al. Relationships between size, steroidogenesis and miRNA expression of the bovine corpus luteum. Theriogenology. 2020;145:226–230.
   PubMed Web of Science ®Google Scholar
• Grzesiak M, Michalik A, Rak A, Knapczyk-Stwora K, Pieczonka A. The expression of autophagy-related proteins within the corpus luteum lifespan in pigs. Domest Anim Endocrinol. 2018;64:9–16.
   PubMed Web of Science ®Google Scholar
• Hampl A, Pachernik J, Dvorak P. Levels and interactions of p27, cyclin D3, and CDK4 during the formation and maintenance of the corpus luteum in mice. Biol Reprod. 2000;62(5):1393–1401.
   PubMed Web of Science ®Google Scholar
• Hoffmann B, Busges F, Baumgartner W. Immunohistochemical detection of CD4-, CD8- and MHC II-expressing immune cells and endoglin in the canine corpus luteum at different stages of dioestrus. Reprod Domest Anim. 2004;39(6):391–395.
   PubMed Web of Science ®Google Scholar
• Shirasuna K, Kobayashi A, Nitta A, et al. Possible action of vasohibin-1 as an inhibitor in the regulation of vascularization of the bovine corpus luteum. Reproduction. 2012;143(4):491–500.
   PubMed Web of Science ®Google Scholar
• Wu L, Feng J, Mu Y, et al. O45-regulation of osteoblast differentiation and ECM remodeling by Bmp2/4 in vitro. Bull Group Int Rech Sci Stomatol Odontol. 2011;49(3):94–97.
   PubMedGoogle Scholar
• Zorrilla LM, D'Annibale MA, Swing SE, Gadsby JE. Expression of genes associated with apoptosis in the porcine corpus luteum during the oestrous cycle. Reprod Domest Anim. 2013;48(5):755–761.
   PubMed Web of Science ®Google Scholar
• Tsutsui T, Hesabi B, Moons DS, et al. Targeted disruption of CDK4 delays cell cycle entry with enhanced p27(Kip1) activity. Mol Cell Biol. 1999;19(10):7011–7019.
   PubMed Web of Science ®Google Scholar
• Hakkarainen J, Jokela H, Pakarinen P, et al. Hydroxysteroid (17β)-dehydrogenase 1-deficient female mice present with normal puberty onset but are severely subfertile due to a defect in luteinization and progesterone production. Faseb J. 2015;29(9):3806–3816.
   PubMed Web of Science ®Google Scholar