REFERENCES
- Benjamini, Y., Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B 57:289–300.
- Bullard, J. H., Purdom, E., Hansen, K. D., Dudoit, S. (2010). Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Informatics 11:94. doi: 10.1186/1471-2105-11-94
- Cox, D. R. (1972). Regression models and life tables (with discussion). Journal of the Royal Statistical Society, Series B 34:187–220.
- Crager, M. R. (2010). Gene identification using true discovery rate degree of association sets and estimates corrected for regression to the mean. Statistics in Medicine 29:33–45. doi: 10.1002/sim.3789
- Crager, M. R. (2012). Prospective calculation of identification power for individual biomarkers in analyses controlling the false discovery rate. Genetic Epidemiology 36:839–847. doi: 10.1002/gepi.21670.
- Efron, B. (2008). Simultaneous inference: When should hypothesis testing problems be combined? Annals of Applied Statistics 2:197–223. doi: 10.1214/07-AOAS141
- Efron, B., Tibshirani, R. (2002). Empirical Bayes methods and false discovery rates for microarrays. Genetic Epidemiology 23:70–86.
- Lin, D. Y., Wei, L. J. (1989). The robust estimation for the Cox proportional hazards model. Journal of the American Statistical Association 84:1074–1078.
- Royston, P., Parmar, M. K. B. (2002). Flexible parametric proportional-hazards and proportional-odds models for censored survival data, with application to prognostic modeling and estimation of treatment effects. Statistics in Medicine 21:2175–2197.
- Sinicropi, D., Qu, K., Collin, F., Crager, M., Liu, M. L., Pelham, R. J., Pho, M., Dei Rossi, A., Jeong, J., Scott, A., Ambannavar, R., Zheng, C., Mena, R., Esteban, J., Stephans, J., Morlan, J., Baker, J. (2012). Whole transcriptome RNA-seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue. PLoS One 7(7):e40092. doi: 10.1371/journal.pone.0040092
- Storey, J. D. (2002). A direct approach to false discovery rates. Journal of the Royal Statistical Society, Series B 64:479–498.