141
Views
63
CrossRef citations to date
0
Altmetric
Original Articles

2-D Graphical representation of proteins based on virtual genetic code

Pages 147-157 | Received 27 Oct 2003, Accepted 28 Feb 2004, Published online: 01 Feb 2007

References

  • Hamori , E . 1989 . Graphical representation of long DNA sequences by methods of H curves, current results and future aspects . BioTechniques , 7 : 710 – 720 .
  • Nandy , A . 1994 . A new graphical representation and analysis of DNA sequence structure. I. Methodology and application to globin gene . Curr. Sci. , 66 : 309 – 313 .
  • Nandy , A . 1996 . Graphical analysis of DNA sequence structure. III. Indications of evolutionary distinctions and characteristics of introns and exons . Curr. Sci. , 70 : 661 – 668 .
  • Roy , A , Raychaudhury , C and Nandy , A . 1998 . A novel technique of graphical representation and analysis of DNA sequences—A review . J. Biosci. , 23 : 55 – 71 .
  • Leong , PM and Mogenthaler , S . 1995 . Random walk and gap plots of DNA sequences . Comput. Appl. Biosci. , 12 : 503 – 511 .
  • Ninio J Mizraji E 1995 Perceptual features in graphical representations of nucleic acid sequences Pickover CA Visualizing Biological Information World Scientific Singapore 33 42
  • Huen YK 1995 Representation of Biological sequences using point geometry analysis Pickover CA Visualizing Biological information World Scientific Singapore 165 182
  • Randić , M , Lerš , N and Plavšić , D . 2003 . Novel 2-D graphical representation of DNA sequences and their numerical characterization . Chem. Phys. Lett. , 368 : 1 – 6 .
  • Randić , M , Lerš , N and Plavšić , D . 2003 . Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation . Chem. Phys. Lett. , 371 : 202 – 207 .
  • Randić , M , Vračko , M , Zupan , J and Novič , M . 2003 . Compact 2-D graphical representation of DNA . Chem. Phys. Lett. , 373 : 558 – 562 .
  • Randić , M . 2001 . On graphical and numerical characterization of proteomics maps . J. Chem. Inf. Comput. Sci. , 41 : 1330 – 1338 .
  • Randić , M , Zupan , J and Novič , M . 2001 . On 3-D graphical representation of proteomics maps and their numerical characterization . J. Chem. Inf. Comput. Sci. , 41 : 1339 – 1344 .
  • Randić , M , Witzmann , F , Vračko , M and Basak , SC . 2001 . On characterization of proteomics maps and chemically induced changes in proteome using matrix invariants: application to peroxisome proliferators . Med. Chem. Res. , 10 : 456 – 479 .
  • Randić M 2003 Quantitative characterization of proteomics maps by matrix invariants Conn PM Handbook of Proteomic Methods Humana Press Inc. Totowa, NJ 429 450
  • Randić , M , Vračko , M and Novič , M . 2002 . On characterization of dose variations of 2-D proteomics maps by matrix invariants . J. Proteome Res. , 1 : 217 – 226 .
  • Randić , M , Zupan , J , Novič , M , Gute , B and Basak , SC . 2002 . Novel matrix invariants for characterization of changes of proteomics maps . SAR QSAR Environ. Res. , 13 : 689 – 703 .
  • Randić , M and Zupan , J . 2004 . Highly compact 2 D graphical representation of DNA sequences . SAR QSAR Environ. Res. , 15 : 191 – 205 .
  • Randić M Plavšić D Basak SC 2004 Characterization of 2-D proteomics maps based on the nearest neighborhoods of spots Croat. Chem. Acta In press
  • Randić M Plavšić D Basak SC 2004 A comparative study of proteomics maps using graph theoretical biodescriptors J. Proteome Res. In press
  • Randić M Zupan J Vračko M Bajzer Ž. 2004 On asymptotic properties of the nearest neighbor graphs of proteome maps J. Mol. Graph. Model. Submitted
  • Jeffrey , HJ . 1900 . Chaos game representation of gene structure . Nucleic Acids Res. , 18 : 2163 – 2170 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.