Microbial Ecology and Everglades Restoration

REFERENCES

• Bays , J. S. , Knight , R. L. , Wenkert , L. , Clarke , R. and Gong , S. 2001 . Progress in the research and demonstration of Everglades periphyton-based stormwater treatment areas . Water Science Technology , 44 : 123 – 130 .
   PubMedGoogle Scholar
• Belanger , T. V. , Scheidt , D. J. and Platko , J. R. II. 1989 . Effects of nutrient enrichment in the Florida Everglades . Lake and Reservoir Management , 5 : 101 – 111 .
   Google Scholar
• Bellisario , L. M. , Moore , T. R. , Bubier , J. L. and Chanton , J. P. 1999 . Controls on methane emission from a northern peatland . Global Geochemical Cycles , 13 : 81 – 91 .
   Web of Science ®Google Scholar
• Browder , J. A. , Black , S. , Brown , M. , Newman , M. , Cottrell , D. , Black , D. , Pope , R. and Pope , P. 1981 . Perspectives on the ecological causes and effects of the variable algal composition of southern Everglades periphyton , Homestead, FL : South Florida Research Center . Report T-643
   Google Scholar
• Browder , J. A. , Cottrell , D. , Brown , M. , Newman , M. , Edwards , R. , Yuska , J. , Browder , M. and Krakoski , J. 1982 . Biomass and primary production of microphytes and macrophytes in periphyton habitats of the southern Everglades , Homestead, FL : South Florida Research Center . Report T-662
   Google Scholar
• Browder , J. A. , Gleason , P. J. and Swift , D. R. 1994 . “ Periphyton in the Everglades: Spatialvariation, environmental correlates, and ecological implications ” . In Everglades: The ecosystem and its restoration , Edited by: Davis , S. M. and Ogden , J. C. 379 – 418 . Delray Beach, FL : St Lucie Press .
   Google Scholar
• Campeau , S. , Murkin , H. R. and Titman , R. D. 1994 . Relative importance of algae and emergent plant litter to freshwater marsh invertebrates . Canadian Journal of Fisheries and Aquatic Sciences , 51 : 681 – 692 .
   Google Scholar
• Castro , H. F. , Newman , S. , Reddy , K. R. and Ogram , A. V. 2005 . Distribution and stability of sulfate reducing prokaryotic and hydrogenotrophic methanogenic assemblages in nutrient-impacted regions of the Florida Everglades . Applied and Environmental Microbiology , 71 : 2695 – 2704 .
   PubMed Web of Science ®Google Scholar
• Castro , H. F. , Ogram , A. and Reddy , K. R. 2004 . Phylogenetic characterization of methanogenic assemblages in eutrophic and oligotrophic areas of the Florida Everglades . Applied and Environmental Microbiology , 70 : 6559 – 6568 .
   PubMedGoogle Scholar
• Cembella , A. D. , Antia , N. J. and Harrison , P. J. 1983 . The utilization of inorganic and organic phosphorous compounds as nutrients by eukaryotic microalgae: A multidisciplinary perspective: Part 1 . CRC- Critical Reviews in Microbiology , 10 : 317 – 391 .
   Google Scholar
• Chanton , J. , Bauer , J. , Glaser , P. , Siegel , D. , Ramonowitz , E. , Tyler , S. , Kelley , C. and Lazrus , A. 1995 . Radiocarbon evidence for the substrates supporting methane formation within northern Minnesota peatlands . Geochimica Cosmochimica Acta , 59 : 3663 – 3668 .
   Web of Science ®Google Scholar
• Chasar , L. , Chanton , J. , Glaser , P. , Siegel , D. and Rivers , J. 2000 . Radiocarbon and stable carbon isotopic evidence for transport and transformation of dissolved organic carbon, dissolved inorganic carbon and CH4 in a northern Minnesota peatland . Global Biogeochemical Cycles , 14 : 1095 – 1108 .
   Web of Science ®Google Scholar
• Chauhan , A. and Ogram , A. 2006a . Stable isotope probing of fatty acid oxidizing guilds in the Florida Everglades . Applied and Environmental Microbiology , 72 : 2400 – 2406 .
   PubMedGoogle Scholar
• Chauhan , A. and Ogram , A. 2006b . Phylogeny of acetate utilizing microorganisms in soils along a nutrient gradient in the Florida Everglades . Applied and Environmental Microbiology , 72 : 6837 – 6840 .
   PubMedGoogle Scholar
• Chauhan , A. , Ogram , A. and Reddy , K. R. 2004 . Syntrophic-methanogenic associations along a nutrient gradient in the Florida Everglades . Applied and Environmental Microbiology , 70 : 3475 – 3484 .
   PubMedGoogle Scholar
• Childers , D. , Jones , R. D. , Trexler , J. C. , Buzelli , C. , Dailey , S. , Edwards , A. , Gaiser , E. , Jaychandaran , K. , Kenne , A. , Lee , D. , Meeder , J. F. , Pechmann , J. H. K. , Renshaw , A. , Richards , J. , Rugge , M. , Scinto , L. J. , Sterling , P. and Gelder , W. 2002 . “ Quantifying the effects of low level phosphorus additions on unenriched Everglades wetlands with in situ flumes and phosphorus dosing ” . In The Everglades, Florida Bay, and coral reefs of the Florida Keys: An ecosystem sourcebook , Edited by: Porter , J. W. and Porter , P. K. G. Boca Raton, FL : CRC Press .
   Google Scholar
• Chimney , M. J. and Pietro , K. C. 2006 . Decomposition of macrophyte litter in a subtropical constructed wetland in south Florida (USA) . Ecological Engineering , 27 : 301 – 321 .
   Web of Science ®Google Scholar
• Conrad , R. 1999 . Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments . FEMS Microbiology Ecology , 28 : 193 – 202 .
   Web of Science ®Google Scholar
• Corstanje , R. , Reddy , K. R. , Prenger , J. P. , Newman , S. and Ogram , A. V. 2007 . Soil microbial eco-physiological response to nutrient enrichment in a sub-tropical wetland . Ecological Indicators , 7 : 277 – 289 .
   Web of Science ®Google Scholar
• Davis , S. M. 1991 . Growth, decomposition and nutrient retention of Cladium jamaicense Crantz and Typha domingensis Pers. in the Florida Everglades . Aquatic Botany , 40 : 203 – 224 .
   Web of Science ®Google Scholar
• Debusk , W. F. and Reddy , K. R. 2005 . Litter decomposition and nutrient dynamics in a phosphorus enriched Everglades marsh . Biogeochemistry , 75 : 217 – 240 .
   Web of Science ®Google Scholar
• Dodds , W. K. 2003 . The role of periphyton in phosphorus retention in shallow freshwater aquatic systems . Journal of Phycology , 39 : 840 – 849 .
   Web of Science ®Google Scholar
• Ewe , S. M. L , Gaiser , E. E. , Childers , D. L. , Rivera-Monroy , V. H. , Iwaniec , D. , Fourquerean , J. and Twilley , R. R. 2006 . Spatial and temporal patterns of above ground net primary productivity (ANPP) in the Florida Coastal Everglades LTER (2001–2004) . Hydrobiologia , 569 : 459 – 474 .
   Google Scholar
• Freeman , C. , Ostle , N. and Kang , H. 2001 . An enzymic ‘latch’ on a global carbon store . Nature , 409 : 149
   PubMed Web of Science ®Google Scholar
• Gaiser , E. 2009 . Periphyton as an indicator of restoration in the Florida Everglades . Ecological Indicators , 9 : S37 – S45 . doi:10.1016/j.ecolind.2008.08.004
   Web of Science ®Google Scholar
• Gaiser , E. E. , Scinto , L. J. , Richards , J. H. , Jayachandran , K. , Childers , D. L. , Trexler , J. C. and Jones , R. D. 2004 . Phosphorus in periphyton mats provides the best metric for detecting low-level P enrichment in an oligotrophic wetland . Water Research , 38 : 507 – 516 .
   PubMedGoogle Scholar
• Gleason , P. J. and Spackman , W. Jr. 1974 . “ Calcareous periphyton and water chemistry in the Everglades ” . In Environments of South Florida: Present and past memoir no. 2 , Edited by: Gleason , P. J. 146 – 181 . Coral Gables, FL : Miami Geological Society .
   Google Scholar
• Gottlieb , A. D. , Richards , J. H. and Gaiser , E. E. 2006 . Comparative study of periphyton community structure in long and short hydroperiod Everglades marshes . Hydrobiologia , 569 : 195 – 207 .
   Google Scholar
• Güsewell , S. and Freeman , C. 2005 . Nutrient limitation and enzyme activities during litter decomposition of nine wetland species in relation to litter N:P ratios . Functional Ecology , 19 : 582 – 593 .
   Google Scholar
• Hines , M. E. , Duddleston , K. and Kiene , R. 2001 . Carbon flow to acetate and C1 compounds in northern wetlands . Geophysical Research Letters , 28 : 4251 – 4254 .
   Web of Science ®Google Scholar
• Hines , M. E. , Duddleston , K N. , Rooney-Varga , J. , Fields , D. and Chanton , J. P. 2008 . Uncoupling of acetate degradation from methane formation in Alaskan wetlands: Connections to vegetation distribution . Global Biogeochemical Cycles , 22 : GB2017 doi:10.1029/2006GB002903
   Google Scholar
• Inglett , P. W. , Inglett , K. S. and Reddy , K. R. 2006 . Tracing carbon and nitrogen through the Everglades food web: An isotope addition pilot study, isotopic analyses of water column, biomass, and phospholipids , Report to the South Florida Water Management District .
   Google Scholar
• Inglett , P. W. , Reddy , K. R. and McCormick , P. V. 2004 . Periphyton chemistry and nitrogenase activity in a nutrient-impacted Everglades ecosystem . Biogeochemistry , 67 : 213 – 233 .
   Google Scholar
• Jasrotia , P. and Ogram , A. V. 2008 . Diversity of nifH genotypes in floating periphyton mats along a nutrient gradient in the Florida Everglades . Present Microbiology , 56 : 563 – 568 .
   Google Scholar
• Jørgensen , B. B. , Revsbech , N. P. and Cohen , Y. 1983 . Photosynthesis and structure of benthic microbial mats-microelectrode and SEM studies of 4 cyanobacterial communities . Limnology and Oceanography , 28 : 1075 – 1093 .
   Web of Science ®Google Scholar
• Kuhn , N. L. , Mendelssohn , I. A. , McKee , K. L. , Brix , H. and Miao , S. L. 2002 . Root phosphatase activity in Cladium jamaicense and Typha domingensis grown under ambient and elevated phosphorus levels . Wetlands , 22 : 794 – 800 .
   Google Scholar
• McCormick , P. V. , Newman , S. , Miao , S. L. , Gawlik , D. E. , Marley , D. , Reddy , K. R. and Fontaine , T. D. 2002 . “ Effects of anthropogenic phosphorus inputs on the Everglades ” . In The Everglades, Florida Bay, and coral reefs of the Florida Keys: An ecosystem sourcebook , Edited by: Porter , J. W. and Porter , K. G. 83 – 126 . Boca Raton, FL : CRC Press .
   Google Scholar
• McCormick , P. A. and Stevenson , R. J. 1998 . Periphyton as a tool for ecological assessment and management in Florida Everglades . Journal of Phycology , 34 : 726 – 733 .
   Web of Science ®Google Scholar
• Murkin , H. R. 1989 . “ The basis for food chains in prairie wetlands ” . In Northern prairie wetlands , Edited by: van der Valk , A. G. 316 – 338 . Ames, IA : Iowa State University Press .
   Google Scholar
• Newman , S. , Kumpf , H. , Laing , J. A. and Kennedy , W. C. 2001 . Decomposition responses to phosphorus enrichment in an Everglades (USA) slough . Biogeochemistry , 54 : 229 – 250 .
   Web of Science ®Google Scholar
• Newman , S. , McCormick , P. V. and Backus , J. G. 2003 . Phosphatase activity as an early warning indicator of wetland eutrophication: Problems and prospects . Journal of Applied Phycology , 15 : 45 – 59 .
   Google Scholar
• Penton , C. R. 2004 . Influences of nutrient loading, vegetative habitats and simulated drought on microbial enzyme activities in the Everglades , Gainesville, FL : Master's thesis, University of Florida .
   Google Scholar
• Penton , C. R. and Newman , S. 2007 . Enzyme activity responses to nutrient loading in subtropical wetlands . Biogeochemistry , 84 : 83 – 98 .
   Google Scholar
• Penton , C. R. and Newman , S. 2008 . Enzyme resource allocation influences on landscape heterogeneity in the Florida Everglades . Journal of Environmental Quality , 37 : 972 – 976 .
   PubMedGoogle Scholar
• Qualls , R. G. and Richardson , C. J. 2000 . Phosphorus enrichment affects litter decomposition, immobilization, and soil microbial phosphorus in wetland mesocosms . Soil Science Society of America Journal , 64 : 799 – 808 .
   Google Scholar
• Qualls , R. G. and Richardson , C. J. 2008 . “ Decomposition of litter and peat in the Everglades: The influence of P concentrations ” . In The Everglades experiments: Lessons for ecosystem restoration , Edited by: Richardson , C. J. 445 – 464 . New York : Springer .
   Google Scholar
• Rejmánková , E. and Houdková , K. 2006 . Wetland plant decomposition under different nutrient conditions: What is more important, litter quality or site quality? . Biogeochemistry , 80 : 275 – 292 .
   Google Scholar
• Ritchie , N. J. , Schutter , M. E. , Dick , R. P. and Myrold , D. D. 2000 . Use of length-heterogeneity-PCR and FAME to characterize microbial communities in soil . Applied and Environmental Microbiology , 66 : 1668 – 1675 .
   PubMed Web of Science ®Google Scholar
• Shannon , C. E. and Warren Weaver , W. 1949 . The Mathematical Theory of Communication , Urbana, Illinois : The University of Illinois Press .
   Google Scholar
• Sharma , K. , Inglett , P. W. , Reddy , K. R. and Ogram , A. V. 2005 . Microscopic examination of photoautotrophic and phosphatase-producing organisms in phosphorus-limited Everglades periphyton mats . Limnology and Oceanography , 50 : 2067 – 2072 .
   Google Scholar
• Sinsabaugh , R. L. and Moorhead , D. L. 1994 . Resource allocation to extracellular enzyme production: a model for nitrogen and phosphorus control of litter decomposition . Soil Biology &. Biochemistry , 26 : 1305 – 1311 .
   Web of Science ®Google Scholar
• Sklar , F. H. , Chimney , M. J. , Newman , S. , McCormick , P. V. , Gawlik , D. , Miao , S. , McVoy , C. , Said , W. , Newman , J. , Coronado , C. , Crozier , G. , Korvela , M. and Rutchey , K. 2005 . The ecological-societal underpinnings of Everglades restoration . Frontiers in Ecology and the Environment , 3 : 161 – 169 .
   Web of Science ®Google Scholar
• Stal , L. J. , van Gemerden , H. and Krumbien , W. E. 1985 . Structure and development of a benthic marine microbial mat . FEMS Microbiology Ecology , 31 : 111 – 125 .
   Web of Science ®Google Scholar
• Suzuki , M. , Rappe , M. S. and Giovannoni , S. J. 1998 . Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity . Applied and Environmental Microbiology , 64 : 4522 – 4529 .
   PubMed Web of Science ®Google Scholar
• Troxler , T. G. and Childers , D. L. 2009 . Litter decomposition promotes differential feedbacks in an oligotrophic southern Everglades wetland . Plant Ecology , 200 : 69 – 82 .
   Google Scholar
• Turner , B. L. and Newman , S. 2005 . Phosphorus cycling in wetlands: The importance of diesters . Journal of Environmental Quality , 34 : 1921 – 1929 .
   PubMedGoogle Scholar
• U.S. Army Corp of Engineers and South Florida Water Management District . 1999 . Central and Southern Florida (C&SF) Project Comprehensive Review Study (Restudy). Final Feasibility Report and Programmatic Environmental Impact Statement (PEIS). U.S , 4034 West Palm Beach, Fl. : ACOE, Jacksonville, Fl and SFWMD .
   Google Scholar
• Uz , I. , Chauhan , A. and Ogram , A. V. 2007 . Cellulolytic, fermentative, and methanogenic potential in benthic periphyton mats from the Florida Everglades . FEMS Microbiology Ecology , 61 : 337 – 347 .
   PubMedGoogle Scholar
• Van Meter-Kasanof , N. 1973 . Ecology of the micro-algae of the Florida Everglades. I. Environment and some aspects of freshwater periphyton, 1959–1963 . Nova Hedwigia , 24 : 619 – 664 .
   Google Scholar
• Wetzel , R. G . 1983 . Opening remarks . Developments in Hydrobiology , 17 : 3 – 4 .
   Google Scholar
• Wetzel , R. G. 1996 . “ Benthic algae and nutrient cycling in lentic freshwater ecosystems ” . In Algal ecology: Freshwater benthic ecosystems , Edited by: Stevenson , R. J. , Bothwell , M. L. and Lowe , R. L. 641 – 667 . New York : Academic Press .
   Google Scholar
• Whiting , G. and Chanton , J. 1993 . Primary production control of methane emission from wetlands . Nature , 364 : 794 – 795 .
   Web of Science ®Google Scholar
• Wright , A. L. and Reddy , K. R. 2001 . Phosphorus loading effects on extracellular enzyme activity in Everglades wetland soils . Soil Science Society of America Journal , 65 : 588 – 595 .
   Web of Science ®Google Scholar
• Zhou , J. , Xia , B. , Treves , D. S. , Wu , L. Y. , Marsh , T. L. , O’Neill , R. V. , Palumbo , A. V. and Tiedje , J. M. 2002 . Spatial and resource factors influencing high microbial diversity in soil . Applied and Environmental Microbiology , 68 : 326 – 334 .
   PubMed Web of Science ®Google Scholar