Automatic Analysis of Dot Blot Images

References

• Albuquerque, P., Mendes, M. V., Santos, C. L., Moradas-Ferreira, P., & Tavares, F. P. (2009). DNA signature-based approaches for bacterial detection and identification. Science of the Total Environment, 407, 3641–3651. https://doi.org/10.1016/j.scitotenv.2008.10.054.
   PubMed Web of Science ®Google Scholar
• Albuquerque, P., Tavares, F., Moradas-Ferreira, P., & Mendes, M. V. (2006). “Twenty molecular markers for an efficient detection of Ralstonia solanacearum”. Proceedings of the 2nd FEMS Congress. Madrid, Spain, 4-6 July 2006.
   Google Scholar
• Caridade, C. M. R., Marcal, A. R. S., Mendonça, T., Albuquerque, P., Mendes, M. V., & Tavares, F. (2010). Automatic analysis of macroarrays images. In Conference Proceedings IEEE Engineering in Medicine and Biology Society (pp. 6122–6125)
   Google Scholar
• Fessehaie, A., De Boer, S. H., & Lévesque, C. A. (2003). An oligonucleotide array for the identification and differentiation of bacteria pathogenic on potato. Phytopathology, 93, 262–269. doi:10.1094/PHYTO.2003.93.3.262.
   PubMed Web of Science ®Google Scholar
• Fleurat-Lessard, P., Luini, E., Berjeaud, J., & Roblin, G. (2014). Immunological detection of Phaeoacremonium aleophilum, a fungal pathogen found in esca disease. European Journal of Plant Pathology, 139, 137–150. doi:10.1007/s10658-013-0372-7.
   Web of Science ®Google Scholar
• Fontanot, M., Iacumin, L., Cecchini, F., Comi, G., & Manzano, M. (2014). Rapid detection and differentiation of important Campylobacter spp. in poultry samples by dot blot and PCR. Food Microbiology, 43, 28–34. doi:10.1016/j.fm.2014.05.001.
   PubMed Web of Science ®Google Scholar
• Guillemin, N., Meunier, B., Jurie, C., Cassar-Malek, I., Hocquette, J. F., Leveziel, H., & Picard, B. (2009). Validation of a dot-blot quantitative technique for large scale analysis of beef tenderness biomarkers. Journal of Physiology and Pharmacology, 60, 91–97.
   PubMed Web of Science ®Google Scholar
• Khushiramani, R., Girisha, S. K., Karunasagar, I., & Karunasagar, I. (2009). Evaluation of a digoxigenin-labelled probe for detection of Aeromonas spp. Letters in Applied Microbiology, 48, 383–385. doi:10.1111/j.1472-765X.2008.02491.x.
   PubMed Web of Science ®Google Scholar
• Kraus, K. (1993). Photogrammetry - Fundamentals and Standard Processes (4th edition). Bonn: Dummler.
   Google Scholar
• Marcal, A. R. S., Caridade, C. M. R., Albuquerque, P., Mendes, M. V., & Tavares, F. (2009). Automatic detection of molecular markers in digital images. Conference Proceedings IEEE Engineering in Medicine and Biology Society, 1, 6710–6713.
   Google Scholar
• Otsu, N. (2002). A threshold selection method from gray-level histograms. IEEE Transactions on Systems, Man and Cybernetics, 9, 62–69.
   Google Scholar
• Otsubo, R., Oikawa, M., Hirakawa, H., Shibata, K., Abe, K., Hayashi, T., … Nagayasu, T. (2014). Novel diagnostic procedure for determining metastasis to sentinel lymph nodes in breast cancer using a semi-dry dot-blot method. International Journal of Cancer, 134, 905–912. doi:10.1002/ijc.28408.
   PubMed Web of Science ®Google Scholar
• Panda, S., Kar, S., Choudhury, R., Sharma, S., & Singh, D. V. (2014). Development and evaluation of hexaplex PCR for rapid detection of methicillin, cadmium/zinc and antiseptic-resistant staphylococci, with simultaneous identification of PVL-positive and -negative Staphylococcus aureus and coagulase negative staphylococci. FEMS Microbiology Letters, 352, 114–122. doi:10.1111/1574-6968.12383.
   PubMed Web of Science ®Google Scholar
• Poltronieri, P., D'urso, O. F., Blaiotta, G., & Morea, M. (2008). DNA Arrays and Membrane Hybridization Methods for Screening of Six Lactobacillus Species Common in Food Products. Food Analytical Methods, 1, 171–180. doi:10.1007/s12161-008-9015-6.
   Web of Science ®Google Scholar
• Sá, G. L., Pacheco, D. B., Monte, L. G., Sinnott, F. A., Xavier, M. A., & Rizzi, C. (2014). Diagnostic potential of anti-rNcp-43 polyclonal antibodies for the detection of Neospora caninum. Current Microbiology, 68, 472–476.
   PubMed Web of Science ®Google Scholar
• Tambong, J. T., De Cock, A. W., Tinker, N. A., & Lévesque, C. A. (2006). Oligonucleotide array for identification and detection of Pythium species. Applied and Environmental Microbiology, 72, 2691–2706. doi:10.1128/AEM.72.4.2691-2706.2006.
   PubMed Web of Science ®Google Scholar
• Tomic, JL, Pensalfini, A., Head, E., & Glabe, C. G. (2009). Soluble fibrillar oligomer levels are elevated in Alzheimer's disease brain and correlate with cognitive dysfunction. Neurobiology of Disease, 35, 352–358. doi:10.1016/j.nbd.2009.05.024.
   PubMed Web of Science ®Google Scholar
• Vieira, J., Mendes, M. V., Albuquerque, P., Moradas-Ferreira, P., & Tavares, F. (2007). A novel approach for the identification of bacterial taxa-specific molecular markers. Letters in Applied Microbiology, 44, 506–512. doi:10.1111/j.1472-765X.2007.02109.x.
   PubMed Web of Science ®Google Scholar
• Vierck, J. L., Bryne, K. M., Dodson, M. V., Krabbenhoft, L., & Cheb, Y. (2000). Evaluating dot and Western blots using image analysis and pixel quantification of electronic images. Methods in Cell Science, 22, 313–318. doi:10.1023/A:1017581302281.
   PubMedGoogle Scholar
• Zhang, C., Chen, G., Ma, C., Wang, Y., Zhang, B., & Wang, G. (2014). Parallel detection of harmful algae using reverse transcription polymerase chain reaction labeling coupled with membrane-based DNA array. Environmental Science and Pollution Research, 21, 4565–4575. doi:10.1007/s11356-013-2416-0.
   PubMed Web of Science ®Google Scholar
• Zhang, C. Y., Chen, G. F., Liu, Y., Wang, Y. Y., Xu, Z., Zhang, B. Y., & Wang, G. C. (2014). Simultaneous detection of harmful algae by multiple polymerase chain reaction coupled with reverse dot blot hybridization. Harmful Algae, 35, 9–19. doi:10.1016/j.hal.2014.03.004.
   Web of Science ®Google Scholar