Neural Network‐Based Analysis of Thiol Proteomics Data in Identifying Potential Selenium Targets

References

• Combs , G. F. and Clark , L. C. 1997 . “ Selenium and cancer prevention ” . In Antioxidant Nutrients and Disease Prevention Boca Raton, FL : CRC Press .
   Google Scholar
• Ip , C. and Ganther , H. E. 1990 . Activity of methylated forms of selenium in cancer prevention . Cancer Res. , 50 ( 4 ) : 1206 – 1211 .
   PubMedGoogle Scholar
• Ip , C. , Hayes , C. , Budnick , R. M. and Ganther , H. E. 1991 . Chemical form of selenium, critical metabolites, and cancer prevention . Cancer Res. , 51 ( 2 ) : 595 – 600 .
   PubMedGoogle Scholar
• Ip , C. 1998 . Lessons from basic research in selenium and cancer prevention . J. Nutr. , 128 ( 11 ) : 1845 – 1854 .
   PubMed Web of Science ®Google Scholar
• Ip , C. , Thompson , H. J. , Zhu , Z. and Ganther , H. E. 2000 . In vitro and in vivo studies of methylseleninic acid: evidence that a monomethylated selenium metabolite is critical for cancer chemoprevention . Cancer Res. , 60 ( 11 ) : 2882 – 2886 .
   PubMed Web of Science ®Google Scholar
• Dong , Y. , Zhang , H. , Hawthorn , L. , Ganther , H. E. and Ip , C. 2003 . Delineation of the molecular basis for selenium‐induced growth arrest in human prostate cancer cells by oligonucleotide array . Cancer Res. , 63 ( 1 ) : 52 – 59 .
   PubMedGoogle Scholar
• Zu , K. and Ip , C. 2003 . Synergy between selenium and vitamin E in apoptosis induction is associated with activation of distinctive initiator caspases in human prostate cancer cells . Cancer Res. , 63 ( 20 ) : 6988 – 6995 .
   PubMedGoogle Scholar
• Dong , Y. , Lee , S. O. , Zhang , H. , Marshall , J. , Gao , A. C. and Ip , C. 2004 . Prostate specific antigen expression is down‐regulated by selenium through disruption of androgen receptor signaling . Cancer Res. , 64 ( 1 ) : 19 – 22 .
   PubMedGoogle Scholar
• Jiang , C. , Wang , Z. , Ganther , H. and Lu , J. 2001 . Caspases as key executors of methyl selenium‐induced apoptosis (anoikis) of DU‐145 prostate cancer cells . Cancer Res. , 61 ( 7 ) : 3062 – 3070 .
   PubMed Web of Science ®Google Scholar
• Jiang , C. , Wang , Z. , Ganther , H. and Lu , J. 2002 . Distinct effects of methylseleninic acid versus selenite on apoptosis, cell cycle, and protein kinase pathways in DU145 human prostate cancer cells . Mol. Cancer Ther. , 1 ( 12 ) : 1059 – 1066 .
   PubMedGoogle Scholar
• Wang , Z. , Jiang , C. and Lu , J. 2002 . Induction of caspase‐mediated apoptosis and cell‐cycle G1 arrest by selenium metabolite methylselenol . Mol. Carcinog. , 34 ( 3 ) : 113 – 120 .
   PubMedGoogle Scholar
• Polgar , L. and Halasz , P. 1978 . Evidence for multiple reactive forms of papain . Eur. J. Biochem. , 88 ( 2 ) : 513 – 521 .
   PubMedGoogle Scholar
• Page , M. G. and West , I. C. 1986 . Characterisation in vivo of the reactive thiol groups of the lactose permease from Escherichia coli and a mutant; exposure, reactivity and the effects of substrate binding . Biochim. Biophys. Acta , 858 ( 1 ) : 67 – 82 .
   PubMedGoogle Scholar
• Wefers , H. and Sies , H. 1983 . Oxidation of glutathione by the superoxide radical to the disulfide and the sulfonate yielding singlet oxygen . Eur. J. Biochem. , 137 ( 1–2 ) : 29 – 36 .
   PubMedGoogle Scholar
• Medeiros , M. H. , Wefers , H. and Sies , H. 1987 . Generation of excited species catalyzed by horseradish peroxidase or hemin in the presence of reduced glutathione and H2O2 . Free Radical Biol. Med. , 3 ( 2 ) : 107 – 110 .
   PubMedGoogle Scholar
• Ganther , H. E. 1999 . Selenium metabolism, selenoproteins and mechanisms of cancer prevention: complexities with thioredoxin reductase . Carcinogenesis , 20 ( 9 ) : 1657 – 1666 .
   PubMed Web of Science ®Google Scholar
• Park , E. M. , Choi , K. S. , Park , S. Y. , Kong , E. S. , Zu , K. , WU , Y. , Zhang , H. , Ip , C. and Park , Y. M. 2005 . A display thiol‐proteomics approach to characterize global redox modification of proteins by selenium: Implications for the anticancer action of selenium . Cancer Genom. Proteom. , 2 : 25 – 36 .
   PubMedGoogle Scholar
• Barto , A. G. , Bradtke , S. J. and Singh , S. P. 1995 . Learning to act using real‐time dynamic programming . Artif. Intell. , 72 ( 1–2 ) : 81 – 138 .
   Web of Science ®Google Scholar
• Zeigler , B. P. , Praehofer , H. and Kim , T. G. 1999 . Theory of Modeling and Simulation , 2nd ed. New York : Academic Press .
   Google Scholar
• Guyon , I. , Matic , N. and Vapnik , V. 1996 . “ Discovering informative patterns and data cleaning ” . In Advances in Knowledge Discovery and Data Mining 181 – 203 . Cambridge : MIT Press .
   Google Scholar
• Lee , J. and Chung , J. Recognition of digits using spatio‐temperal neural network . SPIE Application and Science of Artificial N.N. Conference, Proceedings of the SPIE – The International Society for Optical Engineering, 2492, pt. 2 . pp. 928 – 938 .
   Google Scholar
• Lee , J. and Chung , J. 1996 . Continuous digit recognition using spatio‐temporal neural network . J. Korean Comm. Elect. Eng. ,
   Google Scholar
• Breiman , L. , Friedman , J. , Olshen , R. and Stone , C. 1984 . Classification and Regression Tree Wadsworth International Group .
   Google Scholar
• Seo , Y. R. , Kelley , M. R. and Smith , M. L. 2002 . Selenomethionine regulation of p53 by a ref1‐dependent redox mechanism . Proc. Natl. Acad. Sci. USA , 99 ( 22 ) : 14548 – 14553 .
   PubMed Web of Science ®Google Scholar
• Smith , M. L. , Lancia , J. K. , Mercer , T. I. and Ip , C. 2004 . Selenium compounds regulate p53 by common and distinctive mechanisms . Anticancer Res. , 24 ( 3a ) : 1401 – 1408 .
   PubMed Web of Science ®Google Scholar
• Gopalakrishna , R. , Gundimeda , U. and Chen , Z. H. 1997 . Cancer‐preventive selenocompounds induce a specific redox modification of cysteine‐rich regions in Ca(2+)‐dependent isoenzymes of protein kinase C . Arch. Biochem. Biophys. , 348 ( 1 ) : 25 – 36 .
   PubMedGoogle Scholar