166
Views
3
CrossRef citations to date
0
Altmetric
Articles

Placental tissue metabolome analysis by GC-MS: Oven-drying is a viable sample preparation method

ORCID Icon, , , , , , , & show all
Pages 474-482 | Received 05 Jan 2018, Accepted 24 Mar 2018, Published online: 22 Jun 2018

References

  • Mitra, S.; Brukh, R. Sample Preparation: An Analytical Perspective. Sample Preparation Techniques in Analytical Chemistry. Hoboken, New Jersey: John Wiley & Sons, Inc., 2003; pp. 1–36. Available at: http://dx.doi.org/10.1002/0471457817.ch1
  • Johnson, C.H.; Ivanisevic, J.; Siuzdak, G. Metabolomics: Beyond Biomarkers and Towards Mechanisms. Nat. Rev. Mol. Cell Biol. 2016, 17, 451–459.
  • Wishart, D.S. Emerging Applications of Metabolomics in Drug Discovery and Precision Medicine. Nat. Rev. Drug Discov. 2016, 15, 473–484.
  • Bajad, S.; Shulaev, V. Highly-Parallel Metabolomics Approaches Using LC-MS(2) for Pharmaceutical and Environmental Analysis. Trend. Anal. Chem. TRAC. 2007, 26, 625–636.
  • Want, E.J.; Masson, P.; Michopoulos, F.; Wilson, I.D.; Theodoridis, G.; Plumb, R.S.; Shockcor, J.; Loftus, N.; Holmes, E.; Nicholson, J.K.; et al. Global Metabolic Profiling of Animal and Human Tissues via UPLC-MS. Nat. Protoc. 2013, 8, 17–32.
  • Wu, H.; Southam, A.D.; Hines, A.; Viant, M.R. High-Throughput Tissue Extraction Protocol for NMR- and MS-Based Metabolomics. Anal. Biochem. 2008, 372, 204–212.
  • Dy, J.; Guan, H.; Sampath-Kumar, R.; Richardson, B.S.; Yang, K. Placental 11beta-Hydroxysteroid Dehydrogenase Type 2 Is Reduced in Pregnancies Complicated with Idiopathic Intrauterine Growth Restriction: Evidence That This Is Associated with an Attenuated Ratio of Cortisone to Cortisol in the Umbilical Artery. Placenta 2008, 29, 193–200.
  • McTernan, C.L.; Draper, N.; Nicholson, H.; Chalder, S.M.; Driver, P.; Hewison, M.; Kilby, M.D.; Stewart, P.M. Reduced Placental 11beta-Hydroxysteroid Dehydrogenase Type 2 mRNA Levels in Human Pregnancies Complicated by Intrauterine Growth Restriction: An Analysis of Possible Mechanisms. J. Clin. Endocrinol. Metab. 2001, 86, 4979–4983.
  • Mikelson, C.; Kovach, M.J.; Troisi, J.; Symes, S.; Adair, D.; Miller, R.K.; Salafia, C.; Johnson, K.; Lin, Z.; Richards, S.; et al. Placental 11beta-Hydroxysteroid Dehydrogenase Type 2 Expression: Correlations with Birth Weight and Placental Metal Concentrations. Placenta 2015, 36, 1212–1217.
  • Balakrishnan, B.; Henare, K.; Thorstensen, E.B.; Ponnampalam, A.P.; Mitchell, M.D. Transfer of Bisphenol A Across the Human Placenta. Am. J. Obstet. Gynecol. 2010, 202, 393.e1–397.
  • Troisi, J.; Mikelson, C.; Richards, S.; Symes, S.; Adair, D.; Zullo, F.; Guida, M. Placental Concentrations of Bisphenol A and Birth Weight from Births in the Southeastern U.S. Placenta 2014, 35, 947–952.
  • Giraudeau, P.; Silvestre, V.; Akoka, S. Optimizing Water Suppression for Quantitative NMR-Based Metabolomics: A Tutorial Review. Metabolomics 2015, 11, 1041–1055.
  • Dettmer, K.; Aronov, P.A.; Hammock, B.D. Mass Spectrometry-Based Metabolomics. Mass Spectrom. Rev. 2007, 26, 51–78.
  • Kim, H.K.; Verpoorte, R. Sample Preparation for Plant Metabolomics. Phytochem. Anal. 2010, 21, 4–13.
  • Fang, M.; Ivanisevic, J.; Benton, H.P.; Johnson, C.H.; Patti, G.J.; Hoang, L.T.; Uritboonthai, W.; Kurczy, M.E.; Siuzdak, G. Thermal Degradation of Small Molecules: A Global Metabolomic Investigation. Anal. Chem. 2015, 87, 10935–10941.
  • Austdal, M.; Thomsen, L.C.V.; Tangerås, L.H.; Skei, B.; Mathew, S.; Bjørge, L.; Austgulen, R.; Bathen, T.F.; Iversen, A.-C. Metabolic Profiles of Placenta in Preeclampsia Using HR-MAS MRS Metabolomics. Placenta 2015, 36, 1455–1462.
  • Teasdale, F. Functional Significance of the Zonal Morphologic Differences in the Normal Human Placenta. A Morphometric Study. Am. J. Obstet. Gynecol. 1978, 130, 773–781.
  • Mayhew, T.M. Taking Tissue Samples from the Placenta: An Illustration of Principles and Strategies. Placenta 2008, 29, 1–14.
  • van den Berg, R.A.; Hoefsloot, H.C.; Westerhuis, J.A.; Smilde, A.K.; van der Werf, M.J. Centering, Scaling, and Transformations: Improving the Biological Information Content of Metabolomics Data. BMC Genomics 2006, 7, 142.
  • Wold, S.; Sjöström, M.; Eriksson, L. PLS-Regression: A Basic Tool of Chemometrics. Chemometrics and Intelligent Laboratory Systems 2001, 58, 109–130.
  • Barker, M.; Rayens, W. Partial Least Squares for Discrimination. J. Chemometrics 2003, 17, 166–173.
  • Rubingh, C.M.; Bijlsma, S.; Derks, E.P.P.A.; Bobeldijk, I.; Verheij, E.R.; Kochhar, S.; Smilde, A.K. Assessing the Performance of Statistical Validation Tools for Megavariate Metabolomics Data. Metabolomics 2006, 2, 53–61.
  • Altman, D.G.; Bland, J.M. Measurement in Medicine: The Analysis of Method Comparison Studies. The Statistician 1983, 32, 307–317.
  • Bland, J.M.; Altman, D.G. Measuring Agreement in Method Comparison Studies. Stat. Methods Med. Res. 1999, 8, 135–160.
  • Bland, J.M.; Altman, D.G. Statistical Methods for Assessing Agreement between Two Methods of Clinical Measurement. Lancet 1986, 327, 307–310.
  • Dietterich, T.G. Ensemble Methods in Machine Learning. Multiple Classifier Systems; Springer: Berlin Heidelberg, 2000; pp. 1–15.
  • R Development CORE TEAM R. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing Vienna, Austria; 2008.
  • Chao, J.; Dai, Y.; Cheng, H.-Y.; Lam, W.; Cheng, Y.-C.; Li, K.; Peng, W.-H.; Pao, L.-H.; Hsieh, M.-T.; Qin, X.-M.; et al. Improving the Concentrations of the Active Components in the Herbal Tea Ingredient, Uraria Crinita: The Effect of Post-Harvest Oven-Drying Processing. Sci. Rep. 2017, 7, 38763.
  • Roessner, U.; Wagner, C.; Kopka, J.; Trethewey, R.N.; Willmitzer, L. Technical Advance: Simultaneous Analysis of Metabolites in Potato Tuber by Gas Chromatography-Mass Spectrometry. Plant J. 2000, 23, 131–142.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.