Persistence and renaturation efficiency of thermally treated waste recombinant DNA in defined aquatic microcosms

References

• Vlassov , V. V. , Laktionov , P. P. and Rykova , E. Y. 2007 . Extracellular nucleic acids . Bioessays , 29 : 654 – 667 .
   PubMed Web of Science ®Google Scholar
• Nielsen , K. M. , Johnsen , P. J. , Bensasson , D. and Daffonchio , D. 2007 . Release and persistence of extracellular DNA in the environment. Environ . Biosafety Res , 6 : 37 – 53 .
   PubMedGoogle Scholar
• Duffin , P. M. and Seifert , H. S. 2010 . DNA uptake sequence-mediated enhancement of transformation in Neisseria gonorrhoeae is strain dependent . J. Bacteriol , 192 : 4436 – 4444 .
   PubMed Web of Science ®Google Scholar
• Dell’Anno , A. and Corinaldesi , C. 2004 . Degradation and turnover of extracellular DNA in marine sediments: ecological and methodological considerations . Appl. environ. microbiol , 70 : 4384 – 4386 .
   PubMed Web of Science ®Google Scholar
• Corinaldesi , C. , Danovaro , R. and Dell’Anno , A. 2005 . Simultaneous recovery of extracellular and intracellular DNA suitable for molecular studies from marine sediments . Appl. Environ. Microbiol , 71 : 46 – 50 .
   PubMed Web of Science ®Google Scholar
• Siuda , W. and Chrost , R. J. 2000 . Concentration and susceptibility of dissolved DNA for enzyme degradation in lake water – some methodological remarks . Aquat Microb. Ecol , 21 : 195 – 201 .
   Web of Science ®Google Scholar
• Lorenz , M. and Wackernagel , W. 1994 . Bacterial gene transfer by natural genetic transformation in the environment . Microbiol. Rev , 58 : 563 – 602 .
   PubMedGoogle Scholar
• Siuda , W. and Gude , H. 1996 . Determination of dissolved deoxyribonucleic acid concentration in lake water . Aquat. Microb. Ecol , 11 : 193 – 202 .
   Web of Science ®Google Scholar
• Alvarez , A. , Yumet , G. , Santiago , C. and Toranzos , G. 1996 . Stability of manipulated plasmid DNA in aquatic environments . Environ. Toxicol. Water Qual , 11 : 129 – 135 .
   Google Scholar
• Zhu , B. 2006 . Degradation of plasmid and plant DNA in water microcosms monitored by natural transformation and real-time polymerase chain reaction (PCR) . Water Res , 40 : 3231 – 3238 .
   PubMed Web of Science ®Google Scholar
• England , L. S. , Pollok , J. , Vincent , M. , Kreutzweiser , D. , Fick , W. and Trevors , J. T. 2005 . Holmes SB Persistence of extracellular baculoviral DNA in aquatic microcosms: extraction, purification, and amplification by the polymerase chain reaction (PCR) . Mol Cell Probes , 19 : 75 – 80 .
   PubMed Web of Science ®Google Scholar
• Pietramellara , G. , Ascher , J. , Borgogni , F. , Ceccherini , M. T. and Guerri , G. 2009 . Nannipieri P Extracellular DNA in soil and sediment: fate and ecological relevance. Biol. Fertil . Soils , 45 : 219 – 235 .
   Google Scholar
• Li , M. N. , Zheng , G. H. and Wang , L. 2007 . Biosafety problems and solutions of recombinant gene . J. Environ. Health (in Chinese) , 24 : 1007 – 1010 .
   Google Scholar
• Fu , X. H. , Wang , L. , Li , M. N. , Zeng , X. F. and Le , Y. Q. 2011 . Potential ecological risks of thermal-treated waste recombination DNA discharged into an aquatic environment . J Environ Sci Health A Tox Hazard Subst Environ Eng , 46 : 1640 – 1647 .
   PubMed Web of Science ®Google Scholar
• Fu , X. , Li , M. , Zheng , G. , Le , Y. and Wang , L. 2009 . Waste recombinant DNA: effectiveness of thermo-treatment to manage potential gene pollution . Environ. Pollut , 157 : 2536 – 2541 .
   PubMed Web of Science ®Google Scholar
• Li , M. N. , Zheng , G. H. , Wang , L. , Xiao , W. , Fu , X. H. , Le , Y. Q. and Ren , D. M. 2009 . Evaluation of the effectiveness and safety of the thermo-treatment process to dispose of recombinant DNA waste from biological research laboratories . Sci. Total Environ , 407 : 791 – 797 .
   PubMed Web of Science ®Google Scholar
• Davison , J . 1999 . Genetic Exchange between Bacteria in the Environment . Plasmid , 42 : 73 – 91 .
   PubMed Web of Science ®Google Scholar
• Taub , F . 1989 . Standardized Aquatic Microcosms . Environ. Sci. Technol , 23 : 1064 – 1066 .
   Web of Science ®Google Scholar
• Singer , V. L. , Jones , L. J. and Yue , S. T. 1997 . Haugland RP Characterization of PicoGreen reagent and development of a fluorescence-based solution assay for double-stranded DNA quantitation . Anal. Biochem , 249 : 228 – 238 .
   PubMed Web of Science ®Google Scholar
• Tian , H. and Edenberg , H. J. 2004 . High-throughput quantitation of double-stranded DNA using the ABI Prism 7700 sequence detection system . Anal. Biochem , 326 : 287 – 288 .
   PubMed Web of Science ®Google Scholar
• Smith , C. J. and Osborn , A. M. 2009 . Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology . FEMS Microbiol. Ecol , 67 : 6 – 20 .
   PubMed Web of Science ®Google Scholar
• Rizzl , A. , Panebianco , L. , Giacca , D. , Sorlini , C. and Daffonchio , D. 2003 . Stability and recovery of maize DNA during food processing . Ital. J. Food Sci , 15 : 499 – 510 .
   Web of Science ®Google Scholar
• Deere , D. , Porter , J. and Pickup , R. W. 1996 . Edwards C Survival of cells and DNA of Aeromonas salmonicida released into aquatic microcosms . J Appl. Bacteriol , 81 : 309 – 318 .
   PubMedGoogle Scholar
• Jørgensen , N. O.G. and Jacobsen , C. S. 1996 . Bacterial uptake and utilization of dissolved DNA. Aquat . Microb. Ecol , 11 : 263 – 270 .
   Web of Science ®Google Scholar
• Kim , C. K. , Kwak , M. J. and Lee , S. G. 1996 . Structural and functional stability of the genetic recombinant plasmid pCU103 in different water environments . J. Microbiol , 34 : 241 – 247 .
   Web of Science ®Google Scholar
• Matsui , K. , Honjo , M. and Kawabata , Z. 2001 . Estimation of the fate of dissolved DNA in thermally stratified lake water from the stability of exogenous plasmid DNA. Aquat . Microb. Ecol , 26 : 95 – 102 .
   Web of Science ®Google Scholar
• England , L. S. , Vincent , M. L. , Trevors , J. T. and Holmes , S. B. 2004 . Extraction, detection and persistence of extracellular DNA in forest litter microcosms. Mol . Cell Probes , 18 : 313 – 319 .
   PubMed Web of Science ®Google Scholar
• Torsvik , V. , Goksøyr , J. and Daae , F. L. 1990 . High Diversity in DNA of Soil Bacteria . Appl. Environ. Microbiol , 56 : 782 – 787 .
   PubMed Web of Science ®Google Scholar
• Ke , F. , Luu , Y. K. , Hadjiargyrou , M. and Liang , D. 2010 . Characterizing DNA Condensation and Conformational Changes in Organic Solvents . PLoS ONE , 5 : e13308
   PubMed Web of Science ®Google Scholar
• Laird , C. D. 1971 . Chromatid Structure: Relationship between DNA Content and Nucleotide Sequence Diversity . Chromosoma (Berl.) , 32 : 378 – 406 .
   PubMed Web of Science ®Google Scholar
• Cai , P. , Huang , Q. Y. and Zhang , X. W. 2006 . Interactions of DNA with clay minerals and soil colloidal particles and protection against degradation by dnase . Environ. Sci. Technol , 40 : 2971 – 2976 .
   PubMed Web of Science ®Google Scholar