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Original Articles

Plasmid diversity within a 2,4‐dichlorophenoxyacetic acid‐degrading variovorax paradoxus population isolated from a contaminated soil

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Pages 963-976 | Accepted 26 Jan 1996, Published online: 15 Dec 2008

References

  • Ghosal , D. and You , I.S. 1985 . Microbial degradation of halogenated compounds . Science , 228 : 135 – 142 .
  • Ghosal , D. , You , I.S. , Chatterjee , D.K. and Chakrabarty , A.M. 1985 . “ Plasmids in the degradation of chlorinated aromatic compounds ” . In Plasmids in Bacteria. , Edited by: Helinski , Clewell , Jackson and Hollaender . 667 – 686 . New York : Plenum Press .
  • Don , R.H. and Pemberton , J.M. 1981 . Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus . J. Bacteriol. , 145 : 681 – 686 .
  • Don , R.H. and Pemberton , J.M. 1985 . Genetic and physical map of the 2,4‐dichlorophenoxyacetic acid degradative plasmid pJP4 . J. Bacteriol. , 161 : 466 – 468 .
  • Kukor , J.K. , Olsen , R.H. and Siak , J.S. 1989 . Recruitment of a chromosomally encoded maleylacetate reductase for degradation of 2,4‐dichlorophenoxyacetic acid by plasmid pJP4 . J. Bacteriol. , 179 : 3385 – 3390 .
  • Ghosal , D. and You , I.S. 1988 . Gene duplication in haloaromatic degradative plasmids pJP4 and pJP2 . Can. J. Microbiol. , 34 : 709 – 715 .
  • Perkins , E.J. , Gordon , M.P. , Caceres , O. and Lurquin , P.F. 1990 . Organization and sequence analysis of the 2,4‐dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4 . J. Bacteriol. , 172 : 2351 – 2359 .
  • Bhat , M.A. , Tsuda , M. , Horiike , K. , Nozaki , M. , Vaidyanathan , C.S. and Nakazawa , T. 1994 . Identification of a new plasmid carrying genes for degradation of 2,4‐Dichlorophenoxyacetate from Pseudomonas cepacia CSV90 . Appl. Environ. Microbiol. , 60 : 307 – 312 .
  • Chaudry , G.R. and Huang , G.H. 1988 . Isolation of a new plasmid which carries the genes for degradation of 2,4‐dichlorophenoxyacetate . J. Bacteriol. , 170 : 3897 – 3902 .
  • Pierce , G.E. , Facklam , T.J. and Rice , J.M. 1981 . Isolation and characterization of plasmids from environmental strains of bacteria capable of degrading the herbicide 2,4‐D . Dev. Ind. Microbiol. , 22 : 401 – 408 .
  • Holben , W.E. , Schroeter , B.M. , Calabrese , V.G.M. , Olsen , R.H. , Kukor , J.K. , Biederdeck , V.O. , Smith , A.E. and Tiedje , J.M. 1992 . Gene probe analysis of soil microbial populations selected by amendment with 2,4‐dichlorophenoxyacetic acid . Appl. Environ. Microbiol. , 58 : 3941 – 3948 .
  • Ka , J.O. , Holben , W.E. and Tiedje , J.M. 1994 . Genetic and phenotypic diversity of 2,4‐dichlorophenoxyacetic acid (2,4‐D)‐degrading bacteria isolated from 2,4‐D‐treated field soils . Appl. Environ. Microbiol. , 60 : 1106 – 1115 .
  • Ka , J.O. , Holben , W.E. and Tiedje , J.M. 1994 . Use of gene probes to aid in recovery and identification of functionally dominant 2,4‐dichlorophenoxyacetic acid‐degrading populations in soil . Appl. Environ. Microbiol. , 60 : 1116 – 1120 .
  • Amy , P.S. , Schulke , J.W. , Frazier , L.M. and Seidler , R.J. 1985 . Characterization of aquatic bacteria and cloning of genes specifying partial degradation of 2,4‐dichlorophenoxyacetic acid . Appl. Environ. Microbiol. , 49 : 1237 – 1245 .
  • Fisher , P.R. , Appleton , J. and Pemberton , J.M. 1978 . Isolation and characterization of the pesticide‐degrading plasmid pJPl from Alcaligenes paradoxus . J. Bacteriol. , 135 : 798 – 804 .
  • Loos , M.A. 1975 . Indicator media for microorganisms degrading chlorinated pesticides . Can. J. Microbiol. , 21 : 104 – 107 .
  • Harker , A.R. , Olsen , R.H. and Seidler , R.J. 1989 . Phenoxyacetic acid degradation by the 2,4‐dichlorophenoxyacetic acid (TFD) pathway of plasmid pJP4; mapping and characterization of the TFD regulatory gene tfdR . J. Bacteriol. , 171 : 314 – 320 .
  • Treisman , R. , Sambrook , Fritsch and Maniatis , eds. 1989 . “ Lysis by alkali ” . In Molecular Cloning, a Laboratory Manual , (2nd ed.) , 1.38 – 1.46 . Cold Spring : Cold Spring Harbor Laboratory Press .
  • Ausubel , F.M. , Brent , R. , Kingston , R.F. , Moore , D.D. , Seidman , J.G. , Smith , J.A. and Struhl , K. , eds. 1991 . Current Protocols in Molecular Biology , New York : John Wiley and Sons, Inc. .
  • Barry , A.L. and Thornsberry , C. 1991 . “ Susceptibility tests: diffusion test procedures ” . In Manual of Clinical Microbiology. , Edited by: Balows , A. , Hausler , W.J. Jr. , Herrmann , K.L. , Isenberg , H.D. and Shadomy , H.J. 1117 – 1125 . Washington, D.C. : American Society for Microbiology .
  • Sahm , D.F. and Washington , J.A. II . 1991 . “ Antibacterial susceptibility tests: dilution methods ” . In Manual of Clinical Microbiology , Edited by: Balows , A. , Hausler , W.J. Jr. , Herrmann , K.L. , Isenberg , H.D. and Shadomy , H.J. 1105 – 1116 . Washington, D.C. : American Society for Microbiology .
  • Walter , M.V. , Porteous , A. and Seidler , R.J. 1991 . Formation of transconjugants on plating media following in situ conjugation experiments . Can. J. Microbiol. , 37 : 703 – 707 .
  • Neilson , J.W. , Josephson , K.L. , Pillai , S.D. and Pepper , I.L. 1992 . Polymerase chain reaction and gene probe detection of the 2,4‐dichlorophenoxyacetic acid degradation plasmid, pJP4 . Appl. Environ. Microbiol. , 58 : 1271 – 1275 .
  • Friedrich , B. , Meyer , M. and Schlegel , H.G. 1983 . Transfer and expression of the herbicide degrading plasmid pJP4 in aerobic autotrophic bacteria . Arch. Microbiol. , 134 : 92 – 97 .
  • Sayler , G.S. , Hooper , S.W. , Layton , A.C. and King , J.M. Henry . 1990 . Catabolic plasmids of environmental and ecological significance . Microb. Ecol. , 19 : 1 – 20 .
  • Krawiec , S. and Riley , M. 1990 . Organization of the bacterial chromosome . Microbiol. Rev. , 54 : 502 – 539 .
  • Sarker , M.R. , Ahmed , Z.V. and Rahman , M.M. 1991 . Gene transfer in enteric bacteria through the formation of R‐prime plasmids by an RP4::mini‐Mu element . Microbiol. Immunol. , 35 : 631 – 642 .
  • Chakrabarty , A.M. , Friello , D.A. and Bopp , L.H. 1978 . Transposition of plasmid DNA segments specifying hydrocarbon degradation and their expression in various microorganisms . Proc. Natl. Acad. Sci. USA , 75 : 3109 – 3112 .
  • Pemberton , J.M. 1983 . “ Degradative plasmids ” . In International Review of Cytology. , Edited by: Bourne , G.H. and Danielli , J.F. 155 – 183 . New York : Academic Press .
  • DeFlaun , M.F. and Levy , S.B. 1989 . “ Genes and their varied hosts ” . In Gene Transfer in the Environment , Edited by: Levy , S.B. and Miller , R.V. 1 – 32 . New York : McGraw‐Hill Publishing Co. .
  • Ghosal , D. and You , I.S. 1989 . Operon structure and nucleotide homology of the chlorocatechol oxidation genes of plasmids pJP4 and pAC27 . Gene , 83 : 225 – 232 .
  • Simonsen , L. 1991 . The existence conditions for bacterial plasmids: theory and reality . Microb. Ecol. , 22 : 187 – 205 .
  • Neilson , J.W. , Josephson , K.L. , Pepper , I.L. , Arnold , R.G. , Di Giovanni , G.D. and Sinclair , N.A. 1994 . Frequency of horizontal gene transfer of a large catabolic plasmid (pJP4) in soil . Appl. Environ. Microbiol. , 60 : 4053 – 4058 .
  • Fulthorpe , R.R. and Wyndham , R.C. 1991 . Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem . Appl. Environ. Microbiol. , 57 : 1546 – 1553 .

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