Genetic characterization of Callosciurus (Rodentia: Sciuridae) Asiatic squirrels introduced in Argentina

References

• Aljanabi SM, Martínez I. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCR based techniques. Nucleic Acids Research 25:4692–4693. doi:10.1093/nar/25.22.4692.
   PubMed Web of Science ®Google Scholar
• Aprile G, Chicco D. 1999. Nueva especie exótica de mamífero en la Argentina: la ardilla de vientre rojo (Callosciurus erythraeus). Mastozoología Neotropical 6:7–14.
   Google Scholar
• Benitez VV, Almada Chávez S, Gozzi AC, Messetta LM, Guichón ML. 2013. Invasion status of Asiatic red-bellied squirrels in Argentina. Mammal Biology 78:164–170.
   Web of Science ®Google Scholar
• Bertolino S. 2009. Animal trade and non-indigenous species introduction: The world-wide spread of squirrels. Diversity and Distributions 15:701–708. doi:10.1111/j.1472-4642.2009.00574.x.
   Web of Science ®Google Scholar
• Bertolino S, Currado I, Mazzoglio PJ. 1999. Finlayson’s (variable) squirrel Callosciurus finlaysonii in Italy. Mammalia 63:522–525.
   Web of Science ®Google Scholar
• Borgnia M, Benitez VV, Gozzi AC, Guichón ML. 2013. La ardilla de vientre rojo en Argentina y el manejo de especies introducidas como un problema biológico y social. Ecología Austral 23:147–155.
   Google Scholar
• Cassini GH, Guichón ML. 2009. Variaciones morfológicas y diagnosis de la ardilla de vientre rojo Callosciurus erythraeus (Pallas, 1779) en Argentina. Mastozoolgía Neotropical 16:39–47.
   Google Scholar
• Chakraborty S. 1985. Studies on the genus Callosciurus Gray (Rodentia: Sciuridae). Records of the Zoological Survey of India, Miscellaneous Publications, Occasional Papers, No 63:1–93.
   Google Scholar
• Chang SW, Oshida T, Endo H, Nguyen ST, Dang CN, Nguyen DX, Jiang X, Li ZJ, Lin LK. 2011. Ancient hybridization and underestimated species diversity in Asian striped squirrels (genus Tamiops): Inference from paternal, maternal and biparental markers. Journal of Zoology 285:128–138. doi:10.1111/j.1469-7998.2011.00822.x.
   Web of Science ®Google Scholar
• Clare EL, Lim BK, Engstrom MD, Eger JL, Hebert PDN. 2007. DNA barcoding of Neotropical bats: Species identification and discovery within Guyana. Molecular Ecology Notes 7:184–190. doi:10.1111/j.1471-8286.2006.01657.x.
   Web of Science ®Google Scholar
• Cooper JK, Sykes G, King S, Cottrill K, Ivanova NV, Hanner R, Ikonomi P. 2007. Species identification in cell culture: A two-pronged molecular approach. In Vitro Cellular and Developmental Biology - Animal 43:344–351. doi:10.1007/s11626-007-9060-2.
   PubMed Web of Science ®Google Scholar
• Corbet W, Hill D. 1992. Mammals of the Indomalayan region: A systematic review. London: Oxford University Press.
   Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783–791. doi:10.2307/2408678.
   PubMed Web of Science ®Google Scholar
• Goloboff PA, Farris JS, Nixon KC. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24:774–786. doi:10.1111/j.1096-0031.2008.00217.x.
   Web of Science ®Google Scholar
• Good JM, Hird S, Reid N, Demboski JR, Steppan SJ, Martin-Nims TR, Sullivan J. 2008. Ancient hybridization and mitochondrial capture between two species of chipmunks. Molecular Ecology 17:1313–1327. doi:10.1111/j.1365-294X.2007.03640.x.
   PubMed Web of Science ®Google Scholar
• Guichón ML, Doncaster CP. 2008. Invasion dynamics of an introduced squirrel in Argentina. Ecography 31:211–220. doi:10.1111/j.0906-7590.2008.5308.x.
   Web of Science ®Google Scholar
• Guichón ML, Fasola L, Bello M. 2005. Expansión poblacional de una especie introducida en la Argentina: la ardilla de vientre rojo Callosciurus erythraeus. Mastozoología Neotropical 12:189–197.
   Google Scholar
• Guo Z, Wang Y, Ran J, Guo C, Li B, Zhang M, Song P. 2011. Genetic structure of Pallas’s squirrel (Callosciurus erythraeus) populations from artificial forests in Hongya County, Sichuan, China. Acta Ecologica Sinica 31:71–77. doi:10.1016/j.chnaes.2010.11.012.
   Google Scholar
• Hall T. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symposium Series 41:95–98.
   Google Scholar
• Hird S, Sullivan J. 2009. Assessment of gene flow across a hybrid zone in red-tailed chipmunks (Tamias ruficaudus). Molecular Ecology 18:3097–3109. doi:10.1111/j.1365-294X.2009.04196.x.
   PubMed Web of Science ®Google Scholar
• Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755. doi:10.1093/bioinformatics/17.8.754.
   PubMed Web of Science ®Google Scholar
• Hulme PE, Bacher S, Kenis M, Klotz S, Kühn I, Minchin D, Nentwig W, Olenin S, Panov V, Pergl J, Pyšek P, Roques A, Sol D, Solarz W, Vilà M. 2008. Grasping at the routes of biological invasions: A framework for integrating pathways into policy. Journal of Applied Ecology 45:403–414. doi:10.1111/j.1365-2664.2007.01442.x.
   Web of Science ®Google Scholar
• Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN. 2007. Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes 7:544–548. doi:10.1111/j.1471-8286.2007.01748.x.
   Web of Science ®Google Scholar
• Jobb G, von Haeseler A, Strimmer K. 2004. TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics. Bio Med Central Evolutionary Biolgy 4:18.
   PubMed Web of Science ®Google Scholar
• Keller R, Geist J, Jeschke J, Kühn I. 2011. Invasive species in Europe: Ecology, status, and policy. Environmental Sciences Europe 23:23–17. doi:10.1186/2190-4715-23-23.
   Google Scholar
• Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111–120. doi:10.1007/BF01731581.
   PubMed Web of Science ®Google Scholar
• Kropowski JL, Nandini R. 2008. Global hotspots and knowledge gaps for tree and flying squirrels. Journal of Current Science 95:851–856.
   Web of Science ®Google Scholar
• Kuramoto T, Torii H, Ikeda H, Endo H, Rerkamnuaychoke W, Oshida T. 2012. Mitochondria DNA Sequences of Finlayson’s squirrel found in Hamamatsu, Shizuoka Prefecture, Japan. Mammal Study 37:63–67. doi:10.3106/041.037.0108.
   Web of Science ®Google Scholar
• Lu L, Chesters D, Zhang W, Li G, Ma Y, Ma H, Song X, Wu H, Meng F, Zhu C, Liu Q. 2012. Small mammal investigation in spotted fever focus with DNA-barcoding and taxonomic implications on rodents species from Hainan of China. PLoS One 7:E43479. doi:10.1371/journal.pone.0043479.
   PubMed Web of Science ®Google Scholar
• Lurz PWW, Hayssen V, Geissler K, Bertolino S. 2013. Callosciurus erythraeus (Rodentia: Sciuridae). Mammalian Species 902:60–74. doi:10.1644/902.1.
   Google Scholar
• Moore JC. 1961. Geographical variation in some reproductive characteristics of diurnal squirrels. Bulletin of the American Museum of Natural History 122:1–32.
   Google Scholar
• Moore JC, Tate GHH. 1965. A study of the diurnal squirrels, Sciurinae, of the Indian and Indo-Chinese subregions. Fieldiana Zoology 48:1–351.
   Google Scholar
• Nylander, JAA. 2004. MrAIC.pl. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Sweden.
   Google Scholar
• Oshida T, Dang CN, Nguyen ST, Nguyen NX, Endo H, Kimura J, Sasaki M, Hayashida A, Takano A, Koyabu D, Hayashi Y. 2013. Phylogenetic position of Callosciurus erythraeus griseimanus from Vietnam in the genus Callosciurus. Mammal Study 38:41–17. doi:10.3106/041.038.0105.
   Web of Science ®Google Scholar
• Oshida T, Dang CN, Nguyen ST, Nguyen NX, Endo H, Kimura J, Sasaki M, Hayashida A, Takano A, Yasuda M, Hayashi Y. 2011. Phylogenetic relationship between Callosciurus caniceps and C. inornatus (Rodentia, Sciuridae): Implications for zoogeographical isolation by the Mekong River. Italian Journal of Zoology 78:328–335. doi:10.1080/11250003.2010.490566.
   Web of Science ®Google Scholar
• Oshida T, Ikeda K, Yamada K, Masuda R. 2001a. Phylogeography of the Japanese giant flying squirrel, Petaurista leucogenys, based on mitochondrial DNA control region sequences. Zoological Science 18:107–114. doi:10.2108/zsj.18.107.
   Web of Science ®Google Scholar
• Oshida T, Lee JK, Lin LK, Chen YJ. 2006. Phylogeography of Pallas’s squirrel in Taiwan: Geographical isolation in an arboreal small mammal. Journal of Mammalogy 87:247–254. doi:10.1644/05-MAMM-A-123R1.1.
   Web of Science ®Google Scholar
• Oshida T, Lin LK, Masuda R, Yoshida MC. 2000. Phylogenetic relationships among Asian species of Petaurista (Rodentia, Sciuridae), inferred from mitochondrial cytochrome b gene sequences. Journal Zoological Science 17:123–128. doi:10.2108/zsj.17.123.
   PubMed Web of Science ®Google Scholar
• Oshida T, Shafique MC, Barkati S, Masuda R. 2004. A preliminary study on the genetic diversity of small populations of two flying squirrel species from Pakistan (Hylopetes fimbriatus and Petaurista petaurista albiventer), based on mitochondrial DNA control region sequences. Mammal Study 29:21–26. doi:10.3106/mammalstudy.29.21.
   Google Scholar
• Oshida T, Torii H, Lin L-K, Lee J-K, Chen Y-J, Endo H, Sasaki M. 2007. A preliminary study on origin of Callosciurus squirrels introduced into Japan. Mammal Study 32:75–82. doi:10.3106/1348-6160(2007)32[75:APSOOO]2.0.CO;2.
   Google Scholar
• Oshida T, Yasuda M, Endo H, Hussein NA, Masuda R. 2001b. Molecular phylogeny of five squirrel species of the genus Callosciurus (Mammalia, Rodentia) inferred from cytochrome b gene sequences. Mammalia 65:473–482. doi:10.1515/mamm.2001.65.4.473.
   Web of Science ®Google Scholar
• Palmer GH, Koprowski JL, Pernas T. 2008. Tree squirrels as invasive species: Conservation and management implications. In: Witmer GW, Pitt WC, Fagerstone KA, editors. Managing vertebrate invasive species: Proceedings of an international symposium, USDA/APHIS/Wildlife Services. Fort Collins, CO: National Wildlife Research Center. pp. 273–282.
   Google Scholar
• Puillandre N, Lambert A, Brouillet S, Achaz G. 2012a. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology 21:1864–1877. doi:10.1111/j.1365-294X.2011.05239.x.
   PubMed Web of Science ®Google Scholar
• Puillandre N, Modica MV, Zhang Y, Sirovich L, Boisselier MC, Cruaud C, Holford M, Samadi S. 2012b. Large-scale species delimitation method for hyperdiverse groups. Molecular Ecology 21:2671–2691. doi:10.1111/j.1365-294X.2012.05559.x.
   PubMed Web of Science ®Google Scholar
• Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574. doi:10.1093/bioinformatics/btg180.
   PubMed Web of Science ®Google Scholar
• Smith MF, Patton JL. 1993. The diversification of South American murid rodents: Evidence from mitochondrial DNA sequence data for the akodontine tribe. Biological Journal of the Linnean Society 50:149–177. doi:10.1111/j.1095-8312.1993.tb00924.x.
   Web of Science ®Google Scholar
• Steppan SJ, Storz BL, Hoffmann RS. 2004. Nuclear DNA phylogeny of the squirrels (Mammalia: Rodentia) and the evolution of arboreality from c-myc and RAG1. Molecular Phylogenetics and Evolution 30:703–719. doi:10.1016/S1055-7903(03)00204-5.
   PubMed Web of Science ®Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25:4876–4882. doi:10.1093/nar/25.24.4876.
   PubMed Web of Science ®Google Scholar
• Timmins RJ, Duckworth JW. 2008. Diurnal squirrels (Mammalia Rodentia Sciuridae) in Lao PDR: Distribution, status and conservation. Tropical Zoology 21:11–56.
   Web of Science ®Google Scholar
• Vila C, Amorim IR, Leonard JA, Posada D, Castroviejo J, Petrucci-Fonseca F, Crandall KA, Ellegren H, Wayne RK. 1999. Mitochondrial DNA phylogeography and population history of the grey wolf Canis lupus. Molecular Ecology 8:2089–2103. doi:10.1046/j.1365-294x.1999.00825.x.
   PubMed Web of Science ®Google Scholar
• Wettstein PJ, Strausbauch M, Lamb T, States J, Chakraborty R, Jin L, Riblet R. 1995. Phylogeny of 6 Sciurus aberti subspecies based on nucleotide sequences of cytochrome b. Molecular Phylogenetics and Evolution 4:150–162. doi:10.1006/mpev.1995.1015.
   PubMed Web of Science ®Google Scholar