Chloroplast and nuclear DNA markers to characterize cultivated and spontaneous Ribes

References

• Ballian , D , Grebenc , T , Bozic , G , Melnik , V , Wraber , T and Kraigher , H . 2006 . History, genetic differentiation and conservation strategies for disjunct populations of Sibiraea species from Southeastern Europe and Asia . Conserv Genet , 7 : 895 – 907 .
   Web of Science ®Google Scholar
• Berger , A . 1924 . A taxonomic review of currants and gooseberries . Bull NY State Agric Exp Sta , 109 : 1 – 118 .
   Google Scholar
• Brennan , R M . 1996 . “ Currants and gooseberries ” . In Fruit breeding , Edited by: Janick , J and Moore , J N . 191 – 295 . New York : John Wiley & Sons. Inc .
   Google Scholar
• Brennan , R M , Jorgensen , L , Woodhead , M and Russell , J . 2002 . Development and characterisation of SSR markers in Ribes species . Mol Ecol , 2 : 327 – 330 .
   Web of Science ®Google Scholar
• Coulibaly , S , Pasquet , R S , Papa , R and Gepts , P . 2002 . AFLP analysis of the phenetic organization and genetic diversity of Vigna unguiculata L. Walp reveals extensive gene flow between wild and domesticated types . Theor Appl Genet , 104 : 358 – 366 .
   PubMed Web of Science ®Google Scholar
• Cronquist , A . 1981 . An integrated system of classification of flowering plants , New York : Columbia University Press .
   Google Scholar
• Engler , A and Prantl , K . 1891 . Ribesioideae . Naturl Pflanzenfam , 3 : 97 – 142 .
   Google Scholar
• Ennos , R A , Sinclair , WT , Hu , X S and Langdon , A . 1999 . “ Using organelle markers to elucidate the history, ecology and evolution of plant populations ” . In Molecular systematics and plant evolution , Edited by: Hollingsworth , P M , Bateman , R M and Gornall , R J . 1 – 19 . London : Taylor & Francis .
   Google Scholar
• Grassi , F , Imazio , S , Gomarasca , S , Citterio , S , Aina , R , Sgorbati , S , Sala , F , Patrignani , G and Labra , M . 2004 . Population structure and genetic variation within Valeriana wallrothii Kreyer in relation to different ecological locations . Plant Sci , 166 : 1437 – 1441 .
   Web of Science ®Google Scholar
• Janczewski , E . 1907 . Monograph of the currants Ribes L . Mem Soc Phys Hist Nat Geneve , 35 : 199 – 517 .
   Google Scholar
• Jansen , R K , Kaittanis , C , Lee , S B , Saski , C , Tomkins , J , Alverson , A J and Daniell , H . 2006 . Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids . BMC Evol Biol , 6 : 32
   PubMed Web of Science ®Google Scholar
• Jennings , D L , Anderson , M M and Brennan , R M . 1987 . “ Raspberry and blackcurrant breeding ” . In Improving vegetatively propagated crops , Edited by: Abbot , A J and Atkin , R K . 135 – 147 . London : Academic Press .
   Google Scholar
• Keep , E . 1962 . Interspecific hybridization in Ribes. . Genetica , 33 : 1 – 23 .
   PubMed Web of Science ®Google Scholar
• Kimura , M and Crow , J F . 1964 . The number of alleles that can be maintained in a finite population . Genetics , 49 : 725 – 738 .
   PubMed Web of Science ®Google Scholar
• Komarov , V L . 1971 . “ Flora of the USSR ” . In Ribesioideae , Edited by: Komarov , V L . 175 – 208 . London : Engl Keter .
   Google Scholar
• Korbin , M , Kuras , A and Żurawicz , E . 2002 . Fruit plant germplasm characterisation using molecular markers generated in RAPD and ISSR-PCR . Cell Mol Biol Lett , 72B : 785 – 794 .
   Google Scholar
• Labra , M , Carreno-Sanchez , E , Bardini , M , Basso , B , Sala , F and Scienza , A . 2001 . Extraction and purification of DNA from grapevine leaves . Vitis , 40 : 101 – 102 .
   Web of Science ®Google Scholar
• Labra , M , Grassi , F , Bardini , M , Imazio , S , Guiggi , A , Citterio , S , Banfi , E and Sgorbati , S . 2003 . Genetic relationships in Opuntia Mill. genus (Cactaceae) detected by molecular marker . Plant Sci , 165 : 1129 – 1136 .
   Web of Science ®Google Scholar
• Labra , M , Miele , M , Ledda , B , Grassi , F , Mazzei , M and Sala , F . 2004 . Morphological characterization, essential oil composition and DNA genotyping of Ocimum basilicum L. Cultivars . Plant Sci , 167 : 725 – 731 .
   Web of Science ®Google Scholar
• Lanham , P G and Brennan , R M . 1998 . Characterisation of the genetic resources of redcurrant (Ribes rubrum: subg Ribesia) using anchored microsatellites markers . Theor Appl Genet , 96 : 917 – 921 .
   Web of Science ®Google Scholar
• Lanham , P G and Brennan , R M . 1999 . Genetic characterization of gooseberry (Ribes grossularia subgenus grossularia) germplasm using RAPD, ISSR and AFLP markers . J Hortic Sci Biotech , 74 : 361 – 366 .
   Web of Science ®Google Scholar
• Lanham , P G , Brennan , R M , Hackett , C and McNicol , R J . 1995 . RAPD fingerprinting of blackcurrant (Ribes nigrum L.) cultivars . Theor Appl Genet , 90 : 166 – 172 .
   PubMed Web of Science ®Google Scholar
• Lanham , P G , Korycinska , A and Brennan , R M . 2000 . Genetic diversity within a secondary gene pool or Ribes nigrum L. revealed by RAPD and ISSR markers . J Hortic Sci Biotech , 75 : 371 – 375 .
   Web of Science ®Google Scholar
• McCauley , D E . 1995 . The use of chloroplast DNA polymorphism in studies of gene flow in plants . Trends Ecol Evol , 10 : 198 – 202 .
   PubMed Web of Science ®Google Scholar
• Mengoni , A , Ruggini , C , Vendramin , G G and Bazzicalupo , M . 2000 . Chloroplast microsatellite variations in tetraploid alfalfa . Plant Breeding , 119 : 509 – 512 .
   Web of Science ®Google Scholar
• Messier , W , Li , S H and Stewart , C B . 1996 . The birth of microsatellites . Nature , 381 : 483
   PubMed Web of Science ®Google Scholar
• Nei , M . 1987 . Molecular evolutionary genetics , New York : Columbia University Press .
   Google Scholar
• Nei , M and Li , W H . 1979 . Mathematical model for studying genetic variation in terms of restriction endonucleases . Proc Natl Acad Sci USA , 76 : 5269 – 5273 .
   PubMed Web of Science ®Google Scholar
• Peakall , R and Smouse , P E . GenAlEx V5: Genetic analysis in Excel . Population genetic software for teaching and research. Australian National University . Canberra, Australia. Available http://www.anu.edu.au/BoZo/GenAlEx/
   Google Scholar
• Powell , W , Morgante , M , Andre , C , Hanafey , M , Vogel , J , Tingey , S and Rafalski , A . 1996 . The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germoplasm analysis . Mol Breed , 2 : 225 – 238 .
   Web of Science ®Google Scholar
• Provan , J , Powell , W and Hollingsworth , P M . 2001 . Chloroplast microsatellites: new tools for studies in plant ecology and systematics . TREE , 16 : 142 – 147 .
   PubMed Web of Science ®Google Scholar
• Punitha , D and Raveendran , T S . 2004 . DNA fingerprinting studies in coloured cotton genotypes . Plant Breeding , 123 : 101 – 103 .
   Web of Science ®Google Scholar
• Rehder , A . 1954 . Manual of cultivated trees and shrubs , New York : Macmillan .
   Google Scholar
• Ribeiro , M M , LeProvost , G , Gerber , S , Vendramin , G , Anzidei , M , Decroocq , S , Marpeau , A , Mariette , S and Plomion , C . 2002 . Origin identification of maritime pine stands in France using chloroplast simple-sequence repeats . Ann Forest Sci , 59 : 53 – 62 .
   Web of Science ®Google Scholar
• Rohlf , F J and Sokal , R R . 1981 . Comparing numerical taxonomic studies . Systematic Zool , 30 : 459 – 490 .
   Google Scholar
• Schlotterer , C and Tautz , D . 1992 . Slippage synthesis of simple sequence DNA . Nucl Acids Res , 20 : 211 – 215 .
   PubMed Web of Science ®Google Scholar
• Sinnott , Q P . 1985 . A revision of Ribes L. subg. Grossularia (Mill.) per. Sect. Grossularia (Mill.) Nutt. (Grossulariaceae) in North America . Rhodora , 87 : 189 – 286 .
   Web of Science ®Google Scholar
• Sneath , P HA and Sokal , R R . 1973 . Numerical taxonomy , San Francisco : W.H. Freeman and Company .
   Google Scholar
• Talhinhas , P , Neves-Martins , J and Leitão , J . 2003 . AFLP, ISSR and RAPD markers reveal high levels of genetic diversity among Lupinus spp . Plant breeding , 122 : 507 – 510 .
   Web of Science ®Google Scholar
• Vetenant , A . 1799 . Tableau du regne vegetal , Paris : J. Drisonnier .
   Google Scholar
• Vos , P , Hogers , R , Bleeker , M , Reijans , M , Van de Lee , T , Horenes , M , Fiujters , A , Pot , J , Pelerman , J , Kuiper , M and Zabeau , M . 1995 . AFLP: A new technique for DNA fingerprinting . Nucl Acids Res , 23 : 4407 – 4414 .
   PubMed Web of Science ®Google Scholar
• Weising , K and Gardner , R . 1999 . A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms . Genome , 42 : 9 – 19 .
   PubMed Web of Science ®Google Scholar