673
Views
51
CrossRef citations to date
0
Altmetric
New Trends in Plant Cytogenetics and Cytoembryology – Dedicated to the Memory of Emilio Battaglia

Cytotaxonomy: The end of childhood

Pages 703-710 | Received 13 Mar 2012, Accepted 29 May 2012, Published online: 13 Sep 2012

References

  • Abrouk , M , Murat , F , Pont , C , Messing , J , Jackson , S Faraut , T . 2010 . Palaeogenomics of plants: Synteny-based modelling of extinct ancestors . Trends Plant Sci , 15 : 479 – 487 .
  • Almeida , C and Pedrosa-Harand , A. 2011 . Contrasting rDNA evolution in lima bean (Phaseolus lunatus L.) and common bean (P. vulgaris L., Fabaceae) . Cytogenet Genome Res , 132 : 212 – 217 .
  • Amarillo , F IE and Bass , H W. 2007 . A transgenomic cytogenetic sorghum (Sorghum propinquum) bacterial artificial chromosome fluorescence in situ hybridization map of maize (Zea mays L.) pachytene chromosome 9, evidence for regions of genome hyperexpansion . Genetics , 177 : 1509 – 1526 .
  • Barros e Silva , A E , Marques , A , dos Santos , K GB and Guerra , M. 2010 . The evolution of CMA bands in Citrus and related genera . Chromosome Res , 18 : 503 – 514 .
  • Battaglia , E. 1955 . Chromosome morphology and terminology . Caryologia , 8 : 179 – 187 .
  • Bennett , M D and Leitch , I J. 2011 . Nuclear DNA amounts in angiosperms: Targets, trends and tomorrow . Ann Bot , 107 : 467 – 590 .
  • Berjano , R , Roa , F , Talavera , S and Guerra , M. 2009 . Cytotaxonomy of diploid and polyploid Aristolochia (Aristolochiaceae) species based on the distribution of CMA/DAPI bands and 5S and 45S rDNA sites . Plant Syst Evol , 280 : 219 – 227 .
  • Bonifácio , E M , Fonsêca , E , Almeida , C , dos Santos , K GB and Pedrosa-Harand , A. 2012 . Comparative cytogenetic mapping between the lima bean (Phaseolus lunatus L.) and the common bean (P. vulgaris L.) . Theor Appl Genet , 124 : 1513 – 1520 .
  • Brown , W V. 1972 . Textbook of cytogenetics , Saint Louis : Mosby .
  • Cusimano , N , Sousa , A and Renner , S S. 2012 . Maximum likelihood inference implies a high, not a low, ancestral haploid chromosome number in Araceae, with a critique of the bias introduced by ‘x’ . Ann Bot , 109 : 681 – 692 .
  • de Lange , P J , Heenan , P B , Keeling , D J , Murray , B G , Smissen , R and Sykes , W R. 2008 . Biosystematics and conservation: A case study with two enigmatic and uncommon species of Crassula from New Zealand . Ann Bot , 101 : 881 – 899 .
  • de Melo , N F , Cervi , A C and Guerra , M. 2001 . Karyology and cytotaxonomy of the genus Passiflora L . (Passifloraceae). Plant Syst Evol , 226 : 69 – 84 .
  • Dobigny , G , Ducroz , J-F , Robinson , T J and Volobouev , V. 2004 . Cytogenetics and cladistics . Syst Biol , 53 : 470 – 484 .
  • Dubcovsky , J and Dvořák , J. 1995 . Ribosomal RNA multigene loci: Nomads of the Triticeae genomes . Genetics , 140 : 1367 – 1377 .
  • Escudero , M , Valcárcel , V , Vargas , P and Luceño , M. 2008 . Evolution in Carex L . sect. Spirostachyae (Cyperaceae): A molecular and cytogenetic approach. Organ Divers Evol , 7 : 271 – 291 .
  • Felix , L P and Guerra , M. 2000 . Cytogenetics and cytotaxonomy of some Brazilian species of Cymbidioid orchids . Genet Mol Biol , 23 : 957 – 978 .
  • Garcia , S , Garnatje , T and Kovařík , A. 2012 . Plant rDNA database: Ribosomal DNA loci information goes online . Chromosoma , 121 : 389 – 394 .
  • Gill , B S , Friebe , B and Endo , T R. 1991 . Standard karyotype and nomenclature system for description of chromosome bands and structural aberrations in wheat (Triticum aestivum) . Genome , 34 : 830 – 839 .
  • Goncharov , N P. 2011 . Genus Triticum L . taxonomy: The present and the future. Plant Syst Evol , 295 : 1 – 11 .
  • Graphodatsk , A S , Trifonov , V A and Stanyon , R. 2011 . The genome diversity and karyotype evolution of mammals . Mol Cytogenet , 4 : 22
  • Greilhuber , J and Speta , F. 1978 . Quantitative analyses of C-banded karyotypes, and systematics in the cultivated species of the Scilla siberica group (Liliaceae) . Plant Syst Evol , 129 : 63 – 109 .
  • Guerra , M. 2000a . “ Chromosome number variation and evolution in monocots ” . In Monocots: Systematics and evolution , Edited by: Wilson , K L and Morrison , D A . 127 – 136 . Melbourne : CSIRO .
  • Guerra , M. 2000b . Patterns of heterochromatin distribution in plant chromosomes . Genet Mol Biol , 23 : 1029 – 1041 .
  • Guerra , M. 2008 . Chromosome numbers in plant cytotaxonomy: Concepts and implications . Cytogenet Genome Res , 120 : 339 – 350 .
  • Guerra , M. 2009 . “ Chromosomal variability and the origin of Citrus species ” . In Genetic diversity , Edited by: Mahoney , C L and Springer , D A . 51 – 68 . New York : Nova Science .
  • Guerra , M , Santos , K GB , Barros e Silva , A E and Ehrendorfer , F. 2000 . Heterochromatin banding patterns in Rutaceae-Aurantioideae – A case of parallel chromosomal evolution . Am J Bot , 87 : 735 – 747 .
  • Guillén , A KZ , Hirai , Y , Tanoue , T and Hirai , H. 2004 . Transcriptional repression mechanisms of nucleolus organizer regions (NORs) in humans and chimpanzee . Chromosome Res , 12 : 225 – 237 .
  • Hansen , A K , Gilbert , L E , Simpson , B B , Downie , S R , Cervi , A C and Jansen , R K. 2006 . Phylogenetic relationships and chromosome number evolution in Passiflora . Syst Bot , 31 : 138 – 150 .
  • Heckmann , S , Schroeder-Reiter , E , Kumke , K , Ma , L , Nagaki , K Murata , M . 2011 . Holocentric chromosomes of Luzula elegans are characterized by a longitudinal centromere groove, chromosome bending, and a terminal nucleolus organizer region . Cytogenet Genome Res , 134 : 220 – 228 .
  • Heslop-Harrison , J S and Schwarzacher , T. 2011 . Organisation of the plant genome in chromosomes . Plant J , 66 : 18 – 33 .
  • Hipp , A L , Rothrock , P E and Roalson , E H. 2009 . The evolution of chromosome arrangements in Carex (Cyperaceae) . Bot Rev , 75 : 96 – 109 .
  • Idziak , D , Betekhtin , A , Wolny , E , Lesniewska , K , Wright , J Febrer , M . 2011 . Painting the chromosomes of Brachypodium – Current status and future prospects . Chromosoma , 120 : 469 – 479 .
  • Iovene , M , Grzebelus , E , Carputo , D , Jiang , J and Simon , P W. 2008 . Major cytogenetic landmarks and karyotype analysis in Daucus carota and other Apiaceae . Am J Bot , 95 : 793 – 804 .
  • Jiang , J and Gill , B S. 2006 . Current status and the future of in situ fluorescence (FISH) in plant genome research . Genome , 49 : 1057 – 1068 .
  • Jones , N R. 2012 . B chromosomes in plants . Plant Biosyst , 146 : 727 – 737 .
  • Kovarik , A , Dadejova , M , Lim , Y K , Chase , M W , Clarkson , J J Knapp , S . 2008 . Evolution of rDNA in Nicotiana allopolyploids: A potential link between rDNA homogenization and epigenetics . Ann Bot , 101 : 815 – 823 .
  • Lan , T and Albert , V A. 2011 . Dynamic distribution patterns of ribosomal DNA and chromosomal evolution in Paphiopedilum, a lady's slipper orchid . BMC Plant Biol , 11 : 126
  • Levin , D. 2002 . The role of chromosomal change in plant evolution , Oxford : Oxford University Press .
  • Lim , K Y , Werlemark , G , Matyasek , R , Bringloe , J B , Sieber , V Mokadem , H EL . 2005 . Evolutionary implications of permanent odd polyploidy in the stable sexual, pentaploid of Rosa canina L . Heredity , 94 : 501 – 506 .
  • Lima-de-Faria , A. 1976 . The chromosome field I . Prediction of the location of ribosomal cistrons. Hereditas , 83 : 1 – 22 .
  • Luo , M C , Deal , K R , Akhunov , E D , Akhunov , A R , Anderson , O D Anderson , J A . 2009 . Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae . Proc Natl Acad Sci USA , 106 : 15780 – 15785 .
  • Lysak , M A , Berr , A , Pecinka , A , Schmidt , R , McBreen , K and Schubert , I. 2006 . Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species . Proc Natl Acad Sci USA , 103 : 5224 – 5229 .
  • Ma , L , Vu , G TH , Schubert , V , Watanabe , K , Stein , N Houben , A . 2010 . Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH . Chromosome Res , 18 : 841 – 850 .
  • Mallet , J. 2005 . Hybridization as an invasion of the genome . Trends Ecol Evol , 20 : 229 – 237 .
  • Mandáková , T and Lysak , M A. 2008 . Chromosomal phylogeny and karyotype evolution in x=7 crucifer species (Brassicaceae) . Plant Cell , 20 : 2559 – 2570 .
  • Markova , M and Vyskot , B. 2009 . New horizons of genomic in situ hybridization . Cytogenet Genome Res , 126 : 368 – 375 .
  • Mayrose , I , Barker , M S and Otto , S. 2010 . Probabilistic models of chromosome number evolution and the inference of polyploidy . Syst Biol , 59 : 132 – 144 .
  • Mendes , S , Moraes , A P , Mirkov , T E and Pedrosa-Harand , A. 2011 . Chromosome homeologies and high variation in heterochromatin distribution between Citrus L . and Poncirus Raf. as evidenced by comparative cytogenetic mapping. Chromosome Res , 19 : 521 – 530 .
  • Merxmüller , H. 1970 . Provocation of biosystematics . Taxon , 19 : 140 – 145 .
  • Miranda , M , Almeida , C CS and Guerra , M. 2007 . Karyotype of Araucaria angustifolia and the decondensation/activation mode of its nucleolus organiser region . Aust J Bot , 55 : 165 – 170 .
  • Mola , L M and Papeschi , A G. 2006 . Holocentric chromosomes at a glance . J Basic Appl Genet , 16 : 1 – 17 .
  • Moraes , A P and Guerra , M. 2010 . Cytological differentiation between the two subgenomes of the tetraploid Emilia fosbergii Nicolson and its relationship with E. sonchifolia (L.) DC. (Asteraceae) . Plant Syst Evol , 287 : 113 – 118 .
  • Murray , B G. 2002 . Trees, maps and FISH: The application of genome based technologies to the analysis of chromosome evolution . Curr Genomics , 3 : 539 – 550 .
  • Nishikawa , K , Furuta , Y and Ishitobi , K. 1984 . Chromosomal evolution in genus Carex as viewed from nuclear DNA content, with special reference to its aneuploidy . Jpn J Genet , 59 : 465 – 472 .
  • Ohi-Toma , T , Sugawara , T , Murata , H , Wanke , S , Neinhuis , C and Murata , J. 2006 . Molecular phylogeny of Aristolochia sensu lato (Aristolochiaceae) based on sequences of rbcL, matK, and phyA genes, with special reference to differentiation of chromosome numbers . Syst Bot , 31 : 481 – 492 .
  • Pedrosa-Harand , A , Souza de Almeida , C C , Mosiolek , M , Blair , M W , Schweizer , D and Guerra , M. 2006 . Extensive ribosomal DNA amplification during Andean common bean (Phaseolus vulgaris L.) evolution . Theor Appl Genet , 112 : 924 – 933 .
  • Peruzzi , L , Leitch , I J and Caparelli , K F. 2009 . Chromosome diversity and evolution in Liliaceae . Ann Bot , 103 : 459 – 475 .
  • Raskina , O , Barber , J C , Nevo , E and Belyayev , A. 2008 . Repetitive DNA and chromosomal rearrangements: Speciation-related events in plant genomes . Cytogenet Genome Res , 120 : 351 – 357 .
  • Roalson , E H. 2008 . A synopsis of chromosome number variation in the Cyperaceae . Bot Rev , 74 : 209 – 393 .
  • Rocchi , M , Archidiacono , N , Schempp , W , Capozzi1 , O and Stanyon , R. 2012 . Centromere repositioning in mammals . Heredity , 108 : 59 – 67 .
  • Ruffini Castiglione , M and Cremonini , R. 2012 . A fascinating island: 2n=4 . Plant Biosyst , 146: 711–726.
  • Ruffini Castiglione , M , Frediani , M , Gelati , M T , Venora , G , Giorgetti , L Caputo , P . 2012 . Cytological and molecular characterization of Vicia barbazitae Ten . & Guss. Protoplasma , 249 : 779 – 788 .
  • Schneider , M , Zacaro , A A , Pinto-da-Rocha , R , Candido , D M and Cella , D M. 2009 . A comparative cytogenetic analysis of 2 Bothriuridae species and overview of the chromosome data of Scorpiones . J Hered , 100 : 545 – 555 .
  • Schubert , I and Lysak , M A. 2011 . Interpretation of karyotype evolution should consider chromosome structural constraints . Trends Genet , 27 : 201 – 216 .
  • Schubert , I and Wobus , U. 1985 . In situ hybridization confirms jumping nucleolus organizing regions in Allium . Chromosoma , 92 : 143 – 148 .
  • Souza , L GR , Crosa , O and Guerra , M. 2010 . Karyological circumscription of Ipheion Rafinesque (Gilliesioideae, Alliaceae) . Plant Syst Evol , 287 : 119 – 127 .
  • Souza , L GR , Crosa , O , Speranza , P and Guerra , M. 2012 . Cytogenetic and molecular evidence suggest multiple origins and geographical parthenogenesis in Nothoscordum gracile (Alliaceae) . Ann Bot , 109 : 987 – 999 .
  • Srinivasachary , D MM , Gale , M D and Devos , K M. 2007 . Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes . Theor Appl Genet , 115 : 489 – 499 .
  • Stebbins , G L. 1971 . Chromosomal evolution in higher plants , London : Addison-Wesley .
  • Tate , J A , Soltis , D E and Soltis , P S. 2005 . “ Polyploidy in plants ” . In The evolution of the genome , Edited by: Gregory , T R . 371 – 426 . San Diego : Elsevier Academic Press .
  • Vanzela , A LL , Cuadrado , A , Jouve , A , Luceño , M and Guerra , M. 1998 . Multiple locations of the rDNA sites in holocentric chromosomes of Rhynchospora (Cyperaceae) . Chromosome Res , 6 : 345 – 349 .
  • Vanzela , A LL , Luceño , M and Guerra , M. 2000 . Karyotype evolution and cytotaxonomy in Brazilian species of Rhychospora Vahl (Cyperaceae) . Bot J Linn Soc , 134 : 557 – 566 .
  • Ventura , M , Antonacci , F , Cardone , M F , Stanyon , R , D'Addabbo , P Cellamare , A . 2007 . Evolutionary formation of new centromeres in macaque . Science , 316 : 243 – 246 .
  • Weiss-Schneeweiss , H , Tremetsberger , K , Schneeweiss , G M , Parker , J S and Stuessy , T F. 2008 . Karyotype diversification and evolution in diploid and polyploid South American Hypochaeris (Asteraceae) inferred from rDNA localization and genetic fingerprint data . Ann Bot , 101 : 909 – 918 .
  • Wu , F and Tanksley , S D. 2010 . Chromosomal evolution in the plant family Solanaceae . BMC Genomics , 11 : 182

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.