Ogre retrotransposons in Lathyrus species

References

• Altschul , S F , Gish , W , Miller , W , Myers , E W and Lipman , D J . 1990 . Basic local alignment search tool . J Mol Biol , 215 : 403 – 410 .
   PubMed Web of Science ®Google Scholar
• Asmussen , C and Liston , A . 1998 . Chloroplast DNA characters, phylogeny and classification of Lathyrus (Fabaceae) . Am J Bot , 85 : 387 – 411 .
   PubMed Web of Science ®Google Scholar
• Belancio , V P , Roy-Engel , A M and Deininger , P . 2008 . The impact of multiple splice sites in human L1 elements . Gene , 411 : 38 – 45 .
   PubMed Web of Science ®Google Scholar
• Bennett , M D and Smith , J B . 1976 . Nuclear DNA amounts in Angiosperms . Phil Trans R Soc Lond B , 274 : 227 – 274 .
   PubMed Web of Science ®Google Scholar
• Bennetzen , J L . 1998 . The structure and evolution of angiosperm nuclear genomes . Curr Opin Plant Biol , 1 : 103 – 108 .
   PubMed Web of Science ®Google Scholar
• Bennetzen , J L , Ma , J and Devos , K M . 2005 . Mechanisms of recent genome size variation in flowering plants . Ann Bot , 95 : 127 – 132 .
   PubMed Web of Science ®Google Scholar
• Bennetzen , J L , Schrick , K , Springer , P S , Brown , W E and SanMiguel , P . 1994 . Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA . Genome , 37 : 565 – 576 .
   PubMed Web of Science ®Google Scholar
• Ceccarelli , M , Minelli , S , Maggini , F and Cionini , P G . 1995 . Genome size variation in Vicia faba . Heredity , 74 : 180 – 187 .
   Web of Science ®Google Scholar
• Ceccarelli , M , Sarri , V , Polizzi , E , Andreozzi , G and Cionini , P G . 2010 . Characterization, evolution and chromosomal distribution of two satellite DNA sequence families in Lathyrus species . Cytogenet Genome Res , 128 : 236 – 244 .
   PubMed Web of Science ®Google Scholar
• Chen , C , Ara , T and Gautheret , D . 2009 . Using Alu elements as polyadenylation sites: a case of retroposon exaptation . Mol Biol Evol , 26 : 327 – 334 .
   PubMed Web of Science ®Google Scholar
• Cordaux , R and Batzer , M A . 2009 . The impact of retrotransposons on human genome evolution . Nature Rev Genet , 10 : 691 – 703 .
   PubMed Web of Science ®Google Scholar
• Dellaporta , S L , Wood , J and Hicks , J B . 1983 . A plant DNA minipreparation: version II . Plant Mol Biol Rep , 1 : 19 – 21 .
   Google Scholar
• Hu , W , Das , O P and Messing , J . 1995 . Zeon-1, a member of a new maize retrotransposon family . Mol Gen Genet , 248 : 471 – 480 .
   PubMedGoogle Scholar
• Hull , R . 2001 . Classifying reverse transcribing elements: a proposal and a challenge to the ICTV . Arch Virol , 146 : 2255 – 2261 .
   PubMed Web of Science ®Google Scholar
• Kalendar , R , Flavell , A J , Ellis , T HN , Sjakste , T , Moisy , C and Schulman , A H . 2011 . Analysis of plant diversity with retrotransposon-based molecular markers . Heredity , 106 : 520 – 530 .
   PubMed Web of Science ®Google Scholar
• Kalendar , R , Tanskanen , J , Immonen , S , Nevo , E and Schulman , A H . 2000 . Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence . Proc Natl Acad Sci USA , 97 : 6603 – 6607 .
   PubMed Web of Science ®Google Scholar
• Kidwell , M G and Lisch , D . 1997 . Transposable elements as sources of variation in animals and plants . Proc Natl Acad Sci USA , 94 : 7704 – 7711 .
   PubMed Web of Science ®Google Scholar
• Macas , J and Neumann , P . 2007 . Ogre elements – A distinct group of plant Ty3/gypsy-like retrotransposons . Gene , 390 : 108 – 116 .
   PubMed Web of Science ®Google Scholar
• Meister , G and Tuschl , T . 2004 . Mechanisms of gene silencing by double-stranded RNA . Nature , 431 : 343 – 349 .
   PubMed Web of Science ®Google Scholar
• Meyers , B C , Tingley , S V and Morgante , M . 2001 . Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome . Genome Res , 11 : 1660 – 1676 .
   PubMed Web of Science ®Google Scholar
• Neumann , P , Koblízková , A , Navrátilová , A and Macas , J . 2006 . Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of Giant retroelement . Genetics , 173 : 1047 – 1056 .
   PubMed Web of Science ®Google Scholar
• Neumann , P , Pozárková , D and Macas , J . 2003 . Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced . Plant Mol Biol , 53 : 399 – 410 .
   PubMed Web of Science ®Google Scholar
• Pearson , W R and Lipman , D J . 1988 . Improved tools for biological sequence comparison . Proc Natl Acad Sci USA , 85 : 2444 – 2448 .
   PubMed Web of Science ®Google Scholar
• Pellicer , J , Garnatje , T , Hidalgo , O , Tagashira , N , Vallès , J and Kondo , K . 2010 . Do polyploids require proportionally less rDNA loci than their corresponding diploids? Examples from Artemisia subgenera Absinthium and Artemisia (Asteraceae, Anthemideae) . Plant Biosyst , 144 : 841 – 848 .
   Web of Science ®Google Scholar
• Perepelitsa-Belancio , V and Deininger , P . 2003 . RNA truncation by premature polyadenylation attenuates human mobile element activity . Nat Genet , 35 : 363 – 366 .
   PubMed Web of Science ®Google Scholar
• Sambrook , J , Fritsch , E F and Maniatis , T . 1989 . Molecular cloning – A laboratory manual. , 2nd ed , New York : Cold Spring Harbor Laboratory Press .
   Google Scholar
• SanMiguel , P and Bennetzen , J L . 1998 . Evidence that a recent increase in maize genome was caused by the massive amplification of intergene retrotransposons . Ann Bot , 82 : 37 – 44 .
   Web of Science ®Google Scholar
• SanMiguel , P , Tikhonov , A , Jin , Y K , Motchoulskaia , N , Zakharov , D Melake-Berhan , A . 1996 . Nested retrotransposons in the intergenic regions of the maize genome . Science , 274 : 765 – 768 .
   PubMed Web of Science ®Google Scholar
• Santini , S , Cavallini , A , Natali , L , Minelli , S , Maggini , F and Cionini , P G . 2002 . Ty1/copia- and Ty3/gypsy-like DNA sequences in Helianthus species . Chromosoma , 111 : 192 – 200 .
   PubMed Web of Science ®Google Scholar
• Sarri , V , Minelli , S , Panara , F , Morgante , M , Jurman , I Zuccolo , A . 2008 . Characterization and chromosomal organization of satellite DNA sequences in Picea abies . Genome , 51 : 705 – 713 .
   PubMed Web of Science ®Google Scholar
• Schwarzacher , T and Heslop-Harrison , J S . 2000 . Practical in situ hybridization , Oxford : Bios .
   Google Scholar
• Vegh , Z , Vincze , E , Kadirov , R , Toth , G and Kiss , G B . 1990 . The nucleotide sequence of a nodule-specific gene, Nms-25 of Medicago sativa: Its primary evolution via exon-shuffling and retrotransposon-mediated DNA rearrangements . Plant Mol Biol , 15 : 295 – 306 .
   PubMed Web of Science ®Google Scholar
• Vicient , C M , Suoniemi , A , Anamthavat-Jonsson , K , Tanskanen , J , Beharav , A Nevo , E . 1999 . Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum . Plant Cell , 11 : 1769 – 1784 .
   PubMed Web of Science ®Google Scholar
• White , S E , Habera , L F and Wessler , S R . 1994 . Retrotransposons in the flanking regions of normal plant genes: A role for copia-like elements in the evolution of gene structure and expression . Proc Natl Acad Sci USA , 91 : 11792 – 11796 .
   PubMed Web of Science ®Google Scholar