242
Views
9
CrossRef citations to date
0
Altmetric
Articles

The first SSR-based assessment of genetic variation and structure among Pinus laricio Poiret populations within their native area

, , , &

References

  • Afzal-RafiiZ, DoddRS, ZavarinE. 1996. Genetic diversity in foliar terpenoids among natural populations of european black pine. Biochem Syst Ecol24(4): 325–339. doi:10.1016/0305-1978(96)00028-2.
  • Afzal-RafiiZ, DoddRS. 2007. Chloroplast DNA supports a hypothesis of glacial refugia over postglacial recolonization in disjunct populations of black pine (Pinus nigra) in western Europe. Mol Ecol16(4): 723–736. doi:10.1111/j.1365-294X.2006.03183.x.
  • AucklandLD, BuiT, ZhouY, ShepherdM, WilliamsCG. 2002. Conifer microsatellite handbook. Raleigh, NC: Corporate Press.
  • AvolioS, BertiS. 1987. Ecological, biological, structural and technological surveys of Pinus leucodermis Ant. from the Calabrian Coast Range. In: Annali Istituto Sperimentale per la Selvicoltura, Vol. 18. Editor: Istituto Sperimentale per la Selvicoltura, Arezzo (ITA), pp. 71–122. ISBN: 0390-0010.
  • AvolioS, CiancioO. 1985. The Sila giants. In: Annali Istituto Sperimentale per la Selvicoltura, Vol. 16. Editor: Istituto Sperimentale per la Selvicoltura, Arezzo (ITA). pp. 373–421. ISBN: 0390-0010.
  • BirkyCWJr, FuerstP, MaruyamaT. 1989. Organelle gene diversity under migration, mutation, and drift: Equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells, and comparison to nuclear genes. Genetics103: 513–527.
  • BucciG, González-MartÍnezSC, Le ProvostG, PlomionC, RibeiroMM, SebastianiF, et al. 2007. Range-wide phylogeography and gene zones in Pinus pinaster Ait. revealed by chloroplast microsatellite markers. Mol Ecol16(10): 2137–2153. doi:10.1111/j.1365-294X.2007.03275.x.
  • CescaG, PeruzziL. 2002. Pinus laricio Poir. and P. leucodermis antoine: Karyotype analysis in calabrian populations (southern Italy). Caryologia55(1): 21–25. doi:10.1080/00087114.2002.10589254.
  • ChapuisMP, EstoupA. 2007. Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol24(3): 621–631. doi:10.1093/molbev/msl191.
  • ChenC, DurandE, ForbesF, FrançoisO. 2007. Bayesian clustering algorithms ascertaining spatial population structure: A new computer program and a comparison study. Mol Ecol Notes7(5): 747–756. doi:10.1111/j.1471-8286.2007.01769.x.
  • CiancioO, IovinoF, MenguzzatoA, NicolaciA, NocentiniS. 2006. Structure and growth of a small group selection forest of Calabrian pine in southern Italy: A hypothesis for continuous cover forestry based on traditional silviculture. For Ecol Manage224(3): 229–234. doi:10.1016/j.foreco.2005.12.057.
  • DobrinovI. 1983. Genetic and selection of forest tree. Sofia: Zemizdat.
  • DurandE, JayF, GaggiottiOE, FrancoisO. 2009. Spatial inference of admixture proportions and secondary contact zones. Mol Biol Evol26(9): 1963–1973. doi:10.1093/molbev/msp106.
  • DzialukA, MuchewiczE, BoratyńskiA, MontserratJM, BoratyńskaK, BurczykJ. 2009. Genetic variation of Pinus uncinata (Pinaceae) in the Pyrenees determined with cpSSR markers. Plant Syst Evol277(3–4): 197–205. doi:10.1007/s00606-008-0123-y.
  • El MousadikA, PetitRJ. 1996. High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor Appl Genet92(7): 832–839. doi:10.1007/BF00221895.
  • ErikssonG, SchelanderB, ÅkebrandV. 1973. Inbreeding depression in an old experimental plantation of Picea abies. Hereditas73(2): 185–193. doi:10.1111/j.1601-5223.1973.tb01081.x.
  • EvannoG, RegnautS, GoudetJ. 2005. Detecting the number of clusters of individuals using the software structure: A simulation study. Mol Ecol14(8): 2611–2620. doi:10.1111/j.1365-294X.2005.02553.x.
  • ExcoffierL, EstoupA, CornuetJM. 2005. Bayesian analysis of an admixture model with mutations and arbitrarily linked markers. Genetics169(3): 1727–1738. doi:10.1534/genetics.104.036236.
  • ExcoffierL, SmousePE, QuattroJM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction sites. Genetics131: 479–491.
  • FerrariniE, PadulaM. 1969. Indagini sui pollini fossili di alcune delle località della Calabria (Sila piccolo e Serre) con osservazioni sulla vegetazione attuale. Plant Biosyst103: 547–595.
  • FineschiS. 1984. Determination of the origin of an isolated group of trees of Pinus nigra through enzyme gene markers. Silvae Genet33: 169–172.
  • GaussenH, WebbDA, HeywoodHV. 1993. Pinus. In: TutinGH, HeywoodHV, BurgesVA, MooreDM, ValentineDH, WaltersSM, WebbDA, editors. Flora Europaea. Vol. 1. Cambridge: Cambridge University Press. pp. 40–44.
  • GoudetJ. 2002. FSTAT, a program to estimate and test gene diversities and fixation indices: Version 2.9.3.2, Available: http://www2.unil.ch/popgen/softwares/fstat.htm.
  • HamrickJL. 2004. Response of forest trees to global environmental changes. For Ecol Manage197(1–3): 323–335. doi:10.1016/j.foreco.2004.05.023.
  • HamrickJL, GodtMJW, Sherman-BroylesSL. 1992. Factors influencing levels of genetic diversity in woody plant species. New For6(1–4): 95–124. doi:10.1007/BF00120641.
  • LIFE. 2005. Pin laricio – For a conservatory management of the laricio pine habitats. Project LIFE00 NAT/F/007273, European Commission, Web site. [online] Available: http://www.lifepinlaricio.org.
  • LucicA, Mladenovic-DrinicS, StavretovicN, IsajevV, LavadinovicV, RakonjacL, et al. 2010. Genetic diversity of Austrian pine (Pinus nigra Arnold) populations in Serbia revealed by RAPD. Arch Biol Sci62(2): 329–336. doi:10.2298/ABS1002329L.
  • MantelN. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res27: 209–220.
  • MédailF, DiademaK. 2009. Glacial refugia influence plant diversity patterns in the Mediterranean Basin. J Biogeogr36: 1333–1345.
  • MichalakisY, ExcoffierL. 1996. A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics142: 1061–1064.
  • MogensenHL. 1996. The hows and whys of cytoplasmic inheritance in seed plants. Am J Bot83(3): 383–404. doi:10.2307/2446172.
  • NaydenovKD, TremblayFM, FentonNJ, AlexandrovA. 2006. Structure of Pinus nigra Arn. populations in Bulgaria revealed by chloroplast microsatellites and terpenes analysis: Provenance tests. Biochem Syst Ecol34(7): 562–574. doi:10.1016/j.bse.2006.01.011.
  • NeiM. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics89: 583–590.
  • PeakallR, SmousePE. 2006. GenAlEx 6: Genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes6(1): 288–295. doi:10.1111/j.1471-8286.2005.01155.x.
  • PetitRJ, DuminilJ, FineschiS, HampeA, SalviniD, VendraminGG. 2005. Invited review: Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol Ecol14(3): 689–701. doi:10.1111/j.1365-294X.2004.02410.x.
  • PritchardJK, StephensM, DonnellyP. 2000. Inference of population structure using multilocus genotype data. Genetics155: 945–959.
  • PritchardJK, WenW, FalushD. 2010. Documentation for STRUCTURE software: Version 2.3.3, Available: http://www.pritch.bsd.uchicago.edu.
  • QuézelP, MédailF. 2003. Ecologie et biogéographie du bassin méditerranéen. Paris: Elsevier.
  • RegatoP, ElenaR, Sanchez PalomaresO. 1991. Comparative autoecological study of Pinus nigra Arn. ssp. salzmannii in the Iberian peninsula and other subspecies of the circum-Mediterranean region. For Syst1: 49–59.
  • Rubio-MoragaA, Candel-PerezD, Lucas-BorjaME, TiscarPA, ViñeglaB, LinaresJC, 2012. Genetic diversity of Pinus nigra Arn. populations in southern Spain and northern Morocco revealed by inter-simple sequence repeat profiles. Int J Mol Sci13(12): 5645–5658. doi:10.3390/ijms13055645.
  • SaidS. 1996. Reflexions methodologiques en vue d'une typologie phytoecologique et phytodynamique des forets de Pin laricio en Corse. Licientiate's (DEA) dissertation, Université d'Aix-Marseille III.
  • ScalfiM, PiottiA, RossiM, PiovaniP. 2009. Genetic variability of Italian southern Scots pine (Pinus sylvestris L.) populations: The rear edge of the range. Eur J For Res128(4): 377–386. doi:10.1007/s10342-009-0273-7.
  • ScaltsoyiannesA, RohrR, PanetsosKP, TsaktsiraM. 1994. Allozyme frequency distributions in five European populations of black pine (Pinus nigra Arnold). Silvae Genet43: 20–30.
  • SoranzoN, ProvanJ, PowellW. 1998. Characterization of microsatellite loci in Pinus sylvestris L. Mol Ecol7: 1260–1261.
  • StojanoffN, StefanoffB. 1929. Beitrag zur Kenntnis der Pliozäinflora der Ebene von Sofia. Ztschr Bulg Geol Ges1: 3–115.
  • TansiC, MutoF, CritelliS, IovineG. 2007. Neogene–Quaternary strike-slip tectonics in the central Calabrian Arc (southern Italy). J Geodyn43(3): 393–414. doi:10.1016/j.jog.2006.10.006.
  • ThompsonJD. 2005. Plant evolution in the Mediterranean. New York: Oxford University Press.
  • VendraminGG, LelliL, RossiP, MorganteR. 1996. A set of primers for the amplification of 20 chloroplast microsatellites in Pinaceae. Mol Ecol5(4): 595–598. doi:10.1111/j.1365-294X.1996.tb00353.x.
  • VidakovicM. 1991. Conifer morphology and variation. Zagreb, Hrvatska: GrafiČki zavod Hrvatske.
  • WolfeKH, LiWH, SharpPM. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA84(24): 9054–9058. doi:10.1073/pnas.84.24.9054.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.