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Articles

Phylogeny and divergence times of the Coluteoid clade with special reference to Colutea (Fabaceae) inferred from nrDNA ITS and two cpDNAs, matK and rpl32-trnL(UAG) sequences data

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References

  • Axelord DI. 1992. Climatic pulses, a major factor in legume evolution. In: Herendeen PS, Dilcher DL, editors. Advances in legume systematics 4. The fossil record. Kew: Royal Botanic Gardens. pp. 259–279.
  • Baldwin BJ, Sanderson MJ. 1998. Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proc Nat Acad Sci USA 95: 9402–9406.10.1073/pnas.95.16.9402
  • Boissier E. 1872. Leguminosae, Colutea. Flora Orientalis 2: 193–196.
  • Bornmuller J. 1905. Flora der Elbursgebirge nord-Persiens. Bull Herb Boiss ser. 2: 5, 652.
  • Browicz K. 1963a. The genus Colutea L. Monogr Bot 14: 1–136.
  • Browicz K. 1963b. Oreophysa: An overlooked genus of Leguminosae. Kew Bull 16: 493–495.10.2307/4114711
  • Browicz K. 1968. Rosaceae to Umbelliferae, Colutea. In: Tutin TG, Heywood VH, Burgess NA, Valentine DH, Walters SM, Webb DA, editors. Flora Europaea. Cambridge: Cambridge University Press. p. 107.
  • Browicz K. 1984. Papilionaceae II-Colutea. In: Rechinger KH, editor. Flora Iranica. Graz: Akademische Druck-u, Varlagsantalt, no. 157, pp. 68–77.
  • Cunningham CW. 1997. Can three incongruence tests predict when data should be combined? Mol Biol Evol 14: 733–740.10.1093/oxfordjournals.molbev.a025813
  • Douzery E, Pridgeon A, Kores P, Linder HP, Kurzweil H, Chase M. 1999. Molecular phylogenetics of Diseae (Orchidaceae): A contribution from nuclear ribosomal ITS sequences. Am J Bot 86: 887–889.10.2307/2656709
  • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11–15.
  • Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29: 1969–1973.10.1093/molbev/mss075
  • Edgar RC. 2004. Muscle: Multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32: 1792–1797.10.1093/nar/gkh340
  • Farris JS, Kallersjo M, Kluge AG, Bult C. 1995. Testing significance of incongruence. Cladistics 10: 315–319.
  • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783–791.10.2307/2408678
  • Gaut B, Yang L, Takuno S, Eguiarte LE. 2011. The patterns and causes of variation in plant nucleotide substitution rates. Ann Rev Ecol Evol 42: 245–266.10.1146/annurev-ecolsys-102710-145119
  • Graur D, Li W-H. 2000. Fundamentals of molecular evolution. 2nd ed. Sunderland, MA: Sinauer Assocites Inc.
  • Guo ZT, Sun B, Zhang ZS, Peng SZ, Xiao GQ, Ge JY, et al. 2008. A major reorganization of Asian climatic by the early Miocene. Clim Past 4: 153–174.10.5194/cp-4-153-2008
  • Hall TA. 1999. BioEdit: A user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids SympSer 41: 95–98.
  • Heenan PB. 1998a. Phylogenetic analysis of the Carmichaelia complex, Clianthus, and Swainsona (Fabaceae), from Australia and New Zealand. New Zealand J Bot 36: 21–40.
  • Heenan PB. 1998b. Montigena (Fabaceae-Galegeae), a new genus endemic to New Zealand. New Zealand J Bot 36: 41–51.10.1080/0028825X.1998.9512545
  • Hughes C, Eastwood R. 2006. Island radiation on a continental scale: Exceptional rates of plant diversification after uplift of the Andes. Proc Nat Acad Sci USA 103: 10334–10339.10.1073/pnas.0601928103
  • Hughes CE, Atchison GW. 2015. The ubiquity of alpine plant radiations: From the Andes to the Hengduan mountains. New Phytol 207: 275–282.10.1111/nph.2015.207.issue-2
  • Hutchinson J. 1964. The genera of flowering plants (Angiospermae). vol. I Dicotyledones. Oxford: Clarendon Press.
  • Kang Y, Zhang ML, Chen ZD. 2003. A preliminary phylogenetic study of the subgenus Pogonophace (Astragalus) in China based on ITS sequence data. Act Bot Sinica 45: 140–145.
  • Kazempour Osaloo S, Maassoumi AA, Murakami N. 2003. Molecular systematics of the genus Astragalus L. (Fabaceae): Phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacers and chloroplast gene ndhF sequences. Plant Syst Evol 242: 1–32.10.1007/s00606-003-0014-1
  • Kazempour Osaloo S, Maassoumi AA, Murakami N. 2005. Molecular systematics of the old world Astragalus (Fabaceae) as inferred from nrDNA ITS sequence data. Brittonia 57: 367–381.10.1663/0007-196X(2005)057[0367:MSOTOW]2.0.CO;2
  • Kazempour Osaloo S, Kazemi Nooreini M, Maassoumi AA, Rastegar Pouyani E. 2006. Phylogenetic status of Oreophysa microphylla (Fabaceae–Galeageae) based on nrDNA (ITS region) and cpDNA (trnL intron/trnL–trnLintergenic spacer) sequences. Rostaniha 7: 177–187.
  • Lanfear R, Ho SYW, Davies J, Moles AT, Aarssen L, Swenson NG, et al. 2013. Taller plants have lower rates of molecular evolution. Nat Commun 4: 1879.10.1038/ncomms2836
  • Lavin M, Delgado SA. 1990. Pollen brush of Papilionoideae (Leguminosae): Morphological variation and systematic utility. Am J Bot 77: 1294–1312.10.2307/2444590
  • Lavin M, Herendeen PS, Wojciechowski MF. 2005. Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst Biol 54: 575–594.10.1080/10635150590947131
  • Liston A, Wheeler JA. 1994. The phylogenetic position of the genus Astragalus (Fabaceae): Evidence from the chloroplast genes rpoC1 and rpoC2. Biochem Syst Ecol 22: 377–388.10.1016/0305-1978(94)90028-0
  • Lock J, Schrire BD. 2005. Galegeae. In: Lewis G, Schrire B, Mackinder B, Lock M, editors. Legumes of the world. Kew: Royal Botanical Gardens. pp. 475–487.
  • Mabberley DJ. 2008. The plant-book. A portable dictionary of the higher plants. 3rd ed. Cambridge: Cambridge University Press.
  • Miao YF, Herrmann M, Wu FL, Yan XL, Yang SL. 2012. What controlled Mid–Late Miocene long-term aridification in Central Asia? – Global cooling or Tibetan Plateau uplift: A review. Earth-Science Reviews 112: 155–172.10.1016/j.earscirev.2012.02.003
  • Mirzaei L, Mehregan I, Nejadsatari T, Assadi M. 2015. Phylogeny analysis of Colutea L. (Fabaceae) from Iran based on ITS sequence data. Biodiversitas 16: 168–172.10.13057/biodiv
  • Nylander JAA. 2004. MrModeltest v2. Program distributed by the author. Uppsala: Evolutionary Biology Centre, Uppsala University.
  • Page DM. 2001. Treeview (Win32) version 1.6.6. Available: http://taxonomy.zoology.gla.ac.uk/rod/treeview.html.
  • Podlech D. 1984. Revision von Astragalus L. sect. Herpocaulos Bunge. Mitt Bot Staatssamml. Munchen 20: 441–449.
  • Podlech D. 1999. Papilionaceae III: Astragalus. In: Rechinger KH, editor. Flora Iranica, no. 174. Graz: Akademische Druck-u, Verlagsanstalt. pp. 1–350.
  • Polhill RM. 1981. Galeage. In: Polhill RM, Raven PH, editors. Advances in legume systematics, Part 1. Kew: Royal Botanic Gardens. pp. 357–363.
  • Pooyan P, Ghahremaninejad F, Assadi M. 2014. A synopsis of the genus Colutea (Fabaceae) in Iran. Edinb J Bot 71: 35–49.10.1017/S0960428613000280
  • Posada D, Buckley TR. 2004. Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst Biol 53: 793–808.10.1080/10635150490522304
  • Rechinger KH. 1984. Eremosparton, Sphaerophysa and Smirnowia (Papilionaceae II). In: Rechinger KH, editor. Flora Iranica, no. 157. Graz: Akademische Druck. pp. 65–67.
  • Richardson JE, Pennington RT, Pennington TD, Hollingsworth PM. 2001. Rapid diversification of a species-rich genus of neotropical rain forest trees. Science 293: 2242–2245.10.1126/science.1061421
  • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1–210.
  • Sanderson MJ, Liston A. 1995. Molecular phylogenetic systematics of Galegeae, with special reference to Astragalus. In: Crisp M, Doyle JJ, editors. Advances in legume systematics phylogeny. Kew: Royal Botanical Gardens, 7. pp. 331–350.
  • Sang T, Crawford DJ, Stuessy T. 1995. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implication for biogeography and concerted evolution. Proc Nat Acad Sci USA 92: 6813–6817.10.1073/pnas.92.15.6813
  • Schnitzler J, Barraclough TG, Boatwright JS, Goldblatt P, Manning JC, Powell MP, et al. 2011. Causes of plant diversification in the cape biodiversity hotspot of South Africa. Syst Biol 60: 343–357.10.1093/sysbio/syr006
  • Schwery O, Onstein RE, Bouchenak-Khelladi Y, Xing Y, Carter RJ, Linder HP. 2015. As old as the mountains: The radiations of the Ericaceae. New Phytol 207: 355–367.10.1111/nph.2015.207.issue-2
  • Shaw J, Lickey EB, Schilling EE, Small RL. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III. Am J Bot 94: 275–288.10.3732/ajb.94.3.275
  • Silvestro D, Michalak I. 2012. raxmlGUI: A graphical front-end for RAxML. Org Divers Evol 12: 335–337.10.1007/s13127-011-0056-0
  • Smith SA, Donoghue MJ. 2008. Rates of molecular evolution are linked to life history in flowering plants. Science 322: 86–89.10.1126/science.1163197
  • Steele KP, Wojciechowski MF. 2003. Phylogenetic analyses of tribes Trifolieae and Vicieae based on sequences of the plastid gene matK (Papilionoideae:Leguminosae). In: Klitgaard BB, Bruneau A, editors. Advances in legume systematics, part 10. Higher level systematics. Kew: Royal Botanic Gardens. pp. 355–370.
  • Sun Y, Wang A, Wan D, Wang Q, Liu J. 2012. Rapid radiation of Rheum (Polygonaceae) and parallel evolution of morphological traits. Mol Phylogenet Evol 63: 150–158.10.1016/j.ympev.2012.01.002
  • Swofford DL. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0n10. Sunderland: Sinauer Associates.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725–2729.10.1093/molbev/mst197
  • Wagstaff SJ, Heenan PB, Sanderson MJ. 1999. Classification, origins, and patterns of diversification in New Zealand Carmichaelinae (Fabaceae). Am J Bot 86: 1346–1356.10.2307/2656781
  • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfand D, Sninsky J, White T, editors. PCR protocols: A guide to methods and applications. San Diego, CA: Academic Press. pp. 315–322.
  • Wojciechowski MF, Sanderson MJ, Hu JM. 1999. Evidence on the monophyly of Astragalus (Fabaceae) and its major subgroups based on nuclear ribosomal DNA ITS and chloroplast DNA trnL Intron data. Syst Bot 24: 409–437.10.2307/2419698
  • Wojciechowski MF. 2005. Astragalus (Fabaceae): A molecular phylogenetic perspective. Brittonia 57: 382–396.10.1663/0007-196X(2005)057[0382:AFAMPP]2.0.CO;2
  • Zhang ML. 2003. Biogeography of Astragalus subgenus Pogonophace (Leguminosae). Act Bot Yunnanica 25: 25–32.
  • Zhang ML, Podlech D. 2006. Revision of the genus Phyllolobium Fisch. (Leguminosae-Papilionoideae). Feddes Repert 117: 41–64.10.1002/(ISSN)1522-239X
  • Zhang ML, Kang Y, Zhong Y, Sanderson SC. 2012. Intense uplift of the Qinghai-Tibetan Plateau triggered rapid diversification of Phyllolobium (Leguminosae) in the Late Cenozoic. Plant Ecol Divers 5: 491–499.10.1080/17550874.2012.727875
  • Zhang ML, Hao XL, Sanderson SC, Vyacheslav BV, Sukhorukov AP, Zhang X. 2014. Spatiotemporal evolution of Reaumuria (Tamaricaceae) in Central Asia: insights from molecular biogeography. Phytotaxa 167: 89–103.10.11646/phytotaxa.167.1

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