146
Views
2
CrossRef citations to date
0
Altmetric
Articles

Integrated analysis for identifying Portulaca oleracea and its sub-species based on chloroplastic and nuclear DNA barcoding

, , , , &
Pages 25-31 | Received 28 Jun 2017, Accepted 22 Jan 2018, Published online: 16 Feb 2018

References

  • Alam MA, Juraimi AS, Rafii MY, Hamid AA, Arolu IW, Adbul latif M. 2014. Genetic diversity among collected purslane (Portulaca oleracea L) accessions using ISSR markers. C R Biol. 338:1–11.
  • Artyukova EV, Kozyrenko MM. 2012. Phylogenetic Relationships of Oxytropis chankaensis Jurtz and Oxytropis oxyphylla (Pall) DC (Fabaceae) Inferred from the Data of Sequencing of the ITS Region of the Nuclear Ribosomal DNA Operon and Intergenic Spacers of the Chloroplast Genome. Genetika. 48(2):186–193.
  • Atzei AD. 2003. Le piante nella tradizione popolare della Sardegna. Sassari: Carlo Delfino Editore.
  • Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Missouri Bot Gard. 82:247–277.10.2307/2399880
  • Baumel A, Ainouche ML, Bayr ARL, Ainouche AK, Misset MT. 2002. Molecular phylogeny of hybridizing species from genus Spartina Scherb (Poaceae). Mol Phylogenet Evol. 22:303–314.10.1006/mpev.2001.1064
  • Bernatzky R, Tanksley SD. 1986. Genetics of actin-related sequences in tomato. Theor Appl Genet. 72:314–321.10.1007/BF00288567
  • Beuret E, Caputa J. 1984. Portulaca oleracea L Commun purslane. Rev Suisse Vitic Arboric Hortic. 16(5):288–289.
  • Brito PH, Edwards SV. 2009. Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica. 135:439–455.10.1007/s10709-008-9293-3
  • Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ. 1997. Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Mol Biol Evol. 14:81–90.10.1093/oxfordjournals.molbev.a025705
  • Careme C. 1990. Les adventices des cultures méditerranéennes en Tunisie: leurs plantules leurs semences. INRA Tunis. 304–305.
  • Cenk CK, Yasemin S, Kukul Dilek A. 2008. Performance Of Purslane (Portulaca oleracea L) as a salt-removing crop. Agric Water Manage. 95:854–858.
  • Chennaoui H, Marghali S, Marrakchi M, Trifi-Farah N. 2007. Phylogenetic relationships in Mediterranean Hedysarum genus as inferred from ITS sequences of nuclear ribosomal DNA. Genet Resour Crop Evol. 54:389–397.10.1007/s10722-006-0001-9
  • Choi KS, Park SJ. 2013. Direct Submission Submitted (11-DEC-2013) College of Life Science, Yeungnam University, Daedong, Gyoungsan-si, Gyoungsangbuk-do 712-749, Korea (GenBank: KF954535.1).
  • Crawford JE, Lazzaro BP. 2010. The demographic histories of the M and S molecular forms of Anopheles gambiae s.s. Mol Biol Evol. 27:1739–1744.10.1093/molbev/msq070
  • Dagnelie P. 1975. Theories et methodes statistiques I et II. Agron: Gembloux Press; p. 351–378.
  • Danin A, Baker I, Baker HG. 1979. Cytogeography and taxonomy of the Portulaca oleracea L polyploid complex. Israel J Bot. 27:177–211.
  • Duminil J. 2006. Etudes Comparatives de la Structure Génétique des Plantes [Doctorat en Biologie forestière]. Nancy I France: l’Université Henri Poincaré; p. 215.
  • El-Bakatoushia RAM, Alframawy M, Samer L, El-Sadek L, Botros W. 2013. Evolution of the Portulaca oleracea L aggregate in Egypt on molecular and phenotypic levels revealed by morphology inter-simple sequence repeat (ISSR) and 18S rDNA gene sequence markers. Flora. 208(7):464–477.10.1016/j.flora.2013.07.008
  • Ennos R. 1994. Estimating the relative rates of pollen and seed migration among plant populations. Heredity. 72:250–259.10.1038/hdy.1994.35
  • Fay JC, Wu CI. 2000. Hitchhiking under positive Darwinian selection. Genetics. 155:1405–1413.
  • Fazekas AJ, Steeves R, Newmaster SG. 2010. Submitted (21-JAN-2010) Integrative Biology, University of Guelph, 50 Stone Road E, Guelph, ON N1G 2W1, Canada (GenBank: GU562401.1).
  • Fu YX. 1997. Statistical tests of neutrality of mutations against population growth hitchhiking and background selection. Genetics. 147:915–925.
  • Fu YX, Li WH. 1993. Statistical tests of neutrality of mutations. Genetics. 133:693–709.
  • Geesink R. 1969. An account of the genus Portulaca in Indo-Australia and The Pacific. Blumea. 17:275–301.
  • Gharbi M, Zitouna N, Fadhlaoui I, Trifi-Farah N, Marghali S. 2014. Molecular characterization of Lathyrus species using chloroplast DNA trnH-psbA. Biochem Syst Ecol. 57(439):444.
  • Guarrera PM, Forti G, Marignoli S, Gelsomini G. 2004. Piante e tradizione popolare ad Acquapendente Acquapendente. Regione Lazio: Quaderni del Museo del Fiore 2.
  • Harpke D, Peterson A. 2006. Non concerted ITS evolution in Mammillaria (Cactaceae). Mol Phylogenet Evol. 41(3):579–593.10.1016/j.ympev.2006.05.036
  • Howe CJ, Barbrook AC, Koumandou VL. 2003. Evolution of the chloroplast genome. Philos Trans R Soc B Biol Sci. 358:99–106.10.1098/rstb.2002.1176
  • Hu XS, Ennos R. 1997. On estimation of the ratio of pollen to seed flow among plant populations. Heredity. 7:541–552.10.1038/hdy.1997.194
  • Kiyoko M, Cavers PB. 1980. The biology of Canadian weeds Portulaca oleracea L. Can J Plant Sci. 60:957–963.
  • Koch MA, Dobes C, Mitchell-Olds T. 2003. Multiple hybrid formation in natural populations: concerted evolution of the internal transcribed spacers of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae). Mol Biol Evol. 20:338–350.10.1093/molbev/msg046
  • Kyndt T, Van Droogenbroeck B, Romeijn-Peeters E, Romero-Motochi JP, Scheldeman X, Goetghebeur P, Van Damme P, Gheysen G. 2005. Molecular phylogeny and evolution of Caricaceae based on rDNA internal transcribed spacers and chloroplast sequence data. Mol Phylogenet Evol. 37:442–459.10.1016/j.ympev.2005.06.017
  • Lang BF, Gray MW, Burger G. 1999. Mitochondrial genome evolution and the origin of eukaryotes. Ann Rev Genet. 33:351–397.10.1146/annurev.genet.33.1.351
  • Matthews JF, Ketron DW, Zane SF. 1993. The biology and taxonomy of the Portulaca oleracea L (Portulacaceae) complex in North America. Rhodora. 95:166–183.
  • Mattioli PA. 1568. I discorsi nelli sei libri di Dioscoride della materia medicinale. Venezia: Vincenzo Valgrisi.
  • Miller TE, Wing JS, Huete AR. 1984. The Agricultural Potential of Selected C4 Plants in Arid Environment. J Arid Environ. 7:275–286.
  • Nybom H. 2004. Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol. 13:1143–1155.10.1111/mec.2004.13.issue-5
  • Nyffeler R. 2007. The closest relatives of cacti: Insights from phylogenetic analyses of chloroplast and mitochondrial sequences with special emphasis on relationships in the tribe Anacampseroteae. Am J Bot. 94:89–101.10.3732/ajb.94.1.89
  • Ocampo G, Columbus JT. 2010. Molecular phylogenetics of suborder Cactineae (Caryophyllales) including insights into photosynthetic diversification and historical biogeography. Am J Bot. 97:1827–1847.10.3732/ajb.1000227
  • Ocampo G, Columbus JT. 2012. Molecular phylogenetics historical biogeography and chromosome number evolution in Portulaca (Portulacaceae). Mol Phylogenet Evol. 63:97–112.10.1016/j.ympev.2011.12.017
  • Palmer JD. 1987. Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation. Am Nat. 130:S6–S29.10.1086/284689
  • Petit RJ, Kremer A, Wagner DB. 1993. Finite island model for organelle and nuclear genes in plants. Heredity. 71:630–641.10.1038/hdy.1993.188
  • Pignatti S. 1982. Flora d’Italia – I. Bologna: Edagricole.
  • Rajora OP, Danick BP. 1992. Chloroplast inheritance in populous. Theor App Gent. 84:208–285.
  • Rozas J, Sa′nchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 19:2496–2497.
  • Salah KBH, Chemli R. 2004. Variabilité Phénotypique De Quelques Populations De Pourpier (Portulaca oleracea L) En Tunisie. Acta Bot Gallica. 15:111–119.10.1080/12538078.2004.10516024
  • Schneider S, Roessli D, Excoffier L. 2000. Arelquin ver 2000: A software for population genetic data analysis. Geneva, Switzerland: Genetics and BiometlY LaboratOlY University of Geneva.
  • Shaw J, Lickey EB, Schilling EE, Randall LS. 2007. Comparison of whole chloroplast genome sequences to choose non coding regions for phylogenetic studies in angiosperms. Am J Bot. 94(3):275–288.10.3732/ajb.94.3.275
  • Soltis PS, Plunkett GM, Novak SJ, Soltis DE. 1995. Genetic variation in Tragopogon species : Additional origins of the allotetraploids T mirus and T miscellus (Compositae). Am J Bot. 82:1329–1341.10.1002/ajb2.1995.82.issue-10
  • Sterken R, Kiekens R, Coppens E, Vercauteren I, Zabeau M, Inzé D, Flowers J, Vuylsteke M. 2010. A population genomics study of the Arabidopsis core cell cycle genes shows the signature of natural selection. Plant Cell. 21(10):2987–2998.
  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
  • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 10:512–526.
  • Van Wyk BE. 2005. Food plants of the World. Portland (OR): Timber Press.
  • Von Poellnitz K. 1934. Versuch eine Monographie der Gattung Portulaca L. Fedde Rep. 37:240–320.
  • Wenzel L, Arvanitis D, Rabus H, Lederer T, Baberschke K. 1990. Institut für Experimentalphysik. Berlin D-1000 Federal Republic of Germany Berlin: Freie Universität; p. 33.
  • Xu DH, Abe J, Sakai M, Kanazawa A, Shimamoto Y. 2000. Sequence variation of non-coding regions of chloroplast DNA of soybean and related wild species and its implications for the evolution of different chloroplast haplotypes. Theor Appl Genet. 101:724–732.10.1007/s001220051537
  • Yang Z, Yoder A. 1999. Estimation of the transition/transversion rate bias and species sampling. J Mol Evol. 48:274–283.10.1007/PL00006470
  • Zimmerman CA. 1976. Growth characteristics of weediness in Portulaca oleracea L. Ecology. 57:964–974.10.2307/1941061
  • Zitouna N, Gharbi M, Ben Rhouma H, Chennaoui-Kourda H, Haddioui A, Trifi-Farah N, Marghali S. 2014. Evolutionary and demographic history among Maghrebian Medicago species (Fabaceae) based on the nucleotide sequences of the chloroplast DNA barcode trnH-psbA. Biochem Syst Ecol. 55:296–304.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.