208
Views
2
CrossRef citations to date
0
Altmetric
Original Articles

Genetic diversity and molecular fingerprinting of Prunus cerasus var. austera from central Italy

, , , , , & ORCID Icon show all
Pages 491-497 | Received 07 Feb 2018, Accepted 02 Jul 2018, Published online: 14 Sep 2018

References

  • Antonius K, Aaltonen M, Uosukainen M, Hurme T. 2012. Genotypic diversity in Finnish cultivated sour cherry (Prunus cerasus L.). Genet Resour Crop Evol. 59:375–388.
  • Barac G, Ognjanov V, Obreh D, Ljubojevic M, Bosnjakovic D, Pejic I, Gasic K. 2014. Genotypic and phenotypic diversity of cherry species collected in Serbia. Plant Mol Biol Rep. 32:92–108.
  • Beghe D; Garcia M, Jose F; Fabbri A, et al. 2015. Olive biodiversity in Colombia. A molecular study of local germplasm. Scientia Horticoltirae. 189:122–131.
  • Brush SB, Meng E. 1998. Farmer’s valuation and conservation of crop genetic resources. Genet Resour Crop Evol. 45:139–150.
  • Clarke JB, Tobutt KR. 2003. Development and characterization of polymorphic microsatellites from Prunus avium ’Napoleon’. Mol Ecol Notes. 3:578–580.
  • De Rogatis A, Ferrazzini D, Ducci F, Guerri S, Carnevale S, Belletti P. 2013. Genetic variation in Italian wild cherry (Prunus avium L.) as characterized by nSSR markers. Forestry. 86: 391–400.
  • Dirlewanger E, Claverie J, Wünsch A. Iezzoni AF. 2007. Cherry, In: Kole, C. editor. Fruits and nuts, genome mapping and molecular breeding in plants. Berlin: Springer. p. 103–118.
  • Downey SL, Iezzoni AF. 2000. Polymorphic DNA markers in black cherry (Prunus serotina) are identified using sequences from sweet cherry, peach, and sour cherry. J Am Soc Horticultural Sci. 125: 76–80.
  • Earl DA, and von Holdt BM. 2012. STRUCTURE HARVESTER: a website and program for visualizing structure output and implementing the Evanno method. Conserv Genet Res. 4: 359–361.
  • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of cluster of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 14:2611–2620.
  • Falush D, Stephens M, Pritchard JK. 2007. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes. 7: 574–578.
  • Faria MA, Magalhães R, Ferreira MA, Meredith CP, Ferreira Monteiro F. 2000. Vitis vinifera Must Varietal Authentication Using Microsatellite DNA Analysis (SSR). J Agric Food Chem. 48:1096–1100.
  • Farsad A Esna-Ashari. 2016. Genetic diversity of some Iranian sweet cherry (Prunus avium) cultivars using microsatellite markers and morphological traits. Cytol Genet. 50:8–19.
  • Gascuel O. 1997. Concerning the NJ algorithm and its unweighted version, UNJ. In: Mirkin B, McMorris F, Roberts F, Rzetsky A, editors. Mathematical hierarchies and biology. DIMACS workshop, Series. Providence, R.I, USA: American Mathematical Society. Vol. 37, p. 149–170.
  • Höfer M and Peil A. 2015 Phenotypic and genotypic characterization in the collection of sour and duke cherries (Prunus cerasus and × P. ×gondouini) of the Fruit Genebank in Dresden-Pillnitz, Germany. Genet Resour Crop Evol. 62:551–566.
  • Iezzoni A, Schmidt H, Albertini A. 1990 Cherries (Prunus spp.). In: Moore JN, editor. Genetic resources of temperate fruit and nut crops. Wageningen, Netherlands: ISHS. p. 110–173
  • Jakobsson M and Rosenberg NA. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodal in analysis of population structure. Bioinformatics. 14:1801–1806.
  • Keserović Z, Ognjanov V, Magazin N, Dorić M. 2014. Current situation and perspectives in sour cherry production. Sour Cherry Breeding COST action FA1104 Sustainable production of high-quality cherries for the European market Novi Sad, Serbia. 15.09.2014.–17.09.2014.
  • Khaing AA, Moe KT, BaeK H-J, Park YJ. 2013. Genetic diversity and population structure of selected core set in Amaranthus using SSR markers. Plant Breed. 132:165–173
  • Khadivi-Khub A. 2014. Genetic relationships among cherry species with transferability of simple sequence repeat loci. Mol Biol Rep. 41: 6201–6210.
  • Kim KW, Chung HK, Cho GT, Ma KH, Chandrabalan D, Gwag JG, Jae-Gyun, Kim TS, Cho EG, Park YJ, Yong-Jin. 2007. PowerCore: a program applying the advanced M strategy with a heuristic search for establishing core sets. Bioinformatics. 23:2155–62.
  • Konopacka D, Markowski J, Płocharski W, Rozpara E. 2014. New or lesser known cultivar selection as a tool for sensory and nutritional value enhancement of osmo-convectively dried sour cherries. LWT – Food Sci Technol. 55: 506–512.
  • Lācis G, Kota I. 2013. SSR Marker-based fingerprinting for sour cherry (Prunus cerasus) genetic resources identification and management. In: Evnas KM et al, editors. Proceedings of the 13th Eucarpia Symposium on Fruit Breeding and Genetics. Warsaw Poland: Acta Hort 976.
  • Le Cunff L, Fournier-Leve LA, Laucou V, Vezzulli S, Lacombe T, Adam-Blondon AF, Boursiquot JM, This P. 2008. Construction of nested core collections to optimize the exploitation of natural diversity in Vitis vinifera L. subsp sativa. BMC Plant Biol. 8:31–42.
  • Martin MA, Mattioni, C Cherubini M, Taurchini D, Villani F. 2010. Genetic characterisation of traditional chestnut varieties in Italy using microsatellites (simple sequence repeats) markers. Ann Appl Biol 157:37–44.
  • Mattioni C, Martin MA,Cherubini M, Maccaglia E, DallaRagione I, Villani F. 2011. Molecular characterization and genetic diversity of Citrus aurantium L. germplasm from central Italy. Acta Hort. 918: 297–302.
  • Mouhaddab J, Aadb NA, Msanda F, Filali-Maltouf A, Belkadi B, Ferradouss A, El Modafar C, Ibnsouda Koraichi S, Ghazal H, El Mousadik A. 2001. Moroccan J Biol. 13:1–12.
  • Nikkhah R, Ebadi A, Naghavi, M R et al. 2010. Application of SSR Markers for Characterization of Genetic Diversity within Iranian Grapevine Cultivars (Askari' and;Keshmeshi) Hortic Environ Biotechnol. 51:39–44.
  • Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics. 28:2537–2539.
  • Perrier X, Flori A, Bonnot F. 2003. Data analysis methods. In: Hamon P, Seguin M, Perrier X, Glaszmann JC, editors. Genetic diversity of cultivated tropical plants. Montpellier: Enfield, Science Publishers. p. 43–76.
  • Perrier X, Jacquemoud-Collet JP. 2006. DARwin software http://darwin.cirad.fr/darwin.
  • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945–959.
  • Pereira-Lorenzo S, Ramos-Cabrer AM, Barreneche T, Mattioni C, Villani F, Díaz-Hernández M B, Martín LM and Martín A. 2017. Database of European chestnut cultivars and definition of a Core Collection using simple sequence repeats. Tree Genet Genomes (2017) 13:114–119.
  • Rugienius, R., Frercks, J.B., Siksnianienė, B., Stepulaitienė, I., Stanienė, G., Baniulis, D. and Stanys, V. (2015). Characterisation of genetic diversity of the Lithuanian sour cherry (Prunus cerasus L.) genetic resources using microsatellite markers. Acta Hortic. 1100, 105–108 DOI: 10.17660/ActaHortic.2015.1100.14 https://doi.org/10.17660/ActaHortic.2015.1100.14
  • Tavaud M, Zanetto A, David JL, Laigret F, Dirlewanger E. 2004. Genetic relationships between diploid and allotetraploid cherry species (Prunus avium, Prunus × gondouinii and Prunus cerasus). Heredity. 93:631–638.
  • Testolin R, Marrazzo T, Cipriani G, Quarta R, Verde I, Dettori MT, Pancaldi M, Sansavini S. 2000. Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome. 43:512–520.
  • Toydemir G, Capanoglu E, Kamiloglu S, Boyacioglu D, de Vos RCH, Hall RD, Beekwilder J. 2013. Changes in sour cherry (Prunus cerasus L.) antioxidants during nectar processing and in vitro gastrointestinal digestion. J Funct Food. 5: 1402–1413.
  • Tripp R. 1996. Biodiversity and modern crop varieties: sharpening the debate. Agric Hum Values. 13:48–63.
  • Tsukamoto T, Hauck NR, Tao R, Jiang N, Iezzoni AF. 2006. Molecular characterization of three non-functional S-haplotypes in sour cherry (Prunus cerasus). Plant Mol Biol. 62: 371–383.
  • Van Puyvelde K, Van Geert A, Triest L. 2010. ATETRA, a new software program to analyse tetraploid microsatellite data comparison with TETRA and TETRASAT. Mol Ecol Resour. 10: 331–334.
  • Van Treuren R, Kemp H, Ernsting G, Jongejan B, Houtman H, Visser L. 2010. Microsatellite genotyping of apple (Malus×domestica Borkh.) genetic resources in the Netherlands: application in collection management and variety identification. Genet Resour Crop Evol. 57:853–865.
  • Vaughan SP, Russell K. 2004. Characterization of novel microsatellites and development of multiplex PCR for large-scale population studies in wild cherry, Prunus avium. Mol Ecol Notes. 4:429–431.
  • Yamane H, Ikeda K, Hauck NR, Iezzoni AF, Tao R. 2003 Self-incompatibility (S) locus region of the mutated S6-haplotypes of sour cherry (Prunus cerasus) contains a functional pollen S-allele and a non-functional pistil S allele. J Exp Bot. 54:2431–2434.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.