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Articles

Utility of iPBS retrotransposons markers for molecular characterization of African Gnetum species

ORCID Icon, ORCID Icon, &
Pages 587-592 | Received 20 Feb 2019, Accepted 31 Jul 2019, Published online: 16 Sep 2019

References

  • Baloch FS, Derya M, Andeden EE, Alsaleh A, Cömertpay G, Kilian B, Özkan H. 2015. Inter-primer binding site retrotransposon and inter-simple sequence repeat diversity among wild Lens species. Biochem Syst Ecol. 58:162–168.
  • Biye EH. 2013. Sustaining Gnetum L. (Gnetaceae) in Africa through improved taxonomy and domestication [PhD thesis]. Johannesburg, South Africa: University of Witwatersrand, 339 p.
  • Biye EH, Balkwill K, Cron GV. 2014. A clarification of Gnetum L (Gnetaceae) in Africa and description of two new species. Plant Syst Evol. 300(2):263–272.
  • Biye EH, Cron GV, Balkwill K. 2016. Morphometric delimitation of Gnetum species in Africa. Plant Syst Evol. 302(8):1067–1082.
  • Bongjoh CA, Ngane BK, Tchatat M. 2010. Assessing certain root characteristics among provenances of Gnetum spp. in South West Cameroon: relevance for domestication and conservation. Sci Res Essays. 22:3378–3383.
  • Burkill HM. 1994. The useful plants of West Tropical Africa. Vol 2. Kew: Families E-J Kew, Royal Botanic Gardens; p. 648.
  • Doungous O, Minyaka E, Medva-Mve SD, Medueghue AF, Ngone MA, Simo C, Nsimi AM. 2019. Improving propagation methods of Gnetum africanum and G. buchholzianum from cuttings for rapid multiplication, domestication and conservation. Agrofor Syst. 93(4):1557–1565.
  • Gillespie LJ, Nowicke JW. 1994. Systematic implications of pollen morphology in Gnetum. Acta Bot Gallica. 141(2):131–139.
  • Hou C, Humphreys AM, Thureborn O, Rydin C. 2015. New insights into the evolutionary history of Gnetum (Gnetales). Taxon. 64(2):239–253.
  • Hutchinson J, Dalziel JM. 1954. Flora of West Tropical Africa. Vol 1 Part 1. London (UK): Crown Agents for Overseas Government and Administration.
  • Ingram V, Ndumbe LN, Ewane ME. 2012. Small scale, high value: Gnetum africanum and buchholzianum value chains in Cameroon. Small-Scale For. 11(4):539–556.
  • Isong EU, Adewusi SAR, Nkanga EU, Umoh EE, Offiong EE. 1999. Nutritional and phytogeriatological studies of three varieties of Gnetum africanum (‘afang’). Food Chem. 64(4):489–493.
  • Jaccard P. 1912. The distribution of the flora in the alpine zone. New Phytol. 11(2):37–50.
  • Kalendar R, Schulman AH. 2014. Transposon-based tagging: IRAP, REMAP, and iPBS. Methods Mol Biol. 1115:233–255.
  • Kalendar R, Amenov A, Daniyarov A. 2019. Use of retrotransposon-derived genetic markers to analyze genomic variability in plants. Funct Plant Biol. 46(1):15–29.
  • Kalendar R, Antonius K, Smykal P, Schulman AH. 2010. iPBS: a universal method for DNA fingerprinting and retrotransposon isolation. Theor Appl Genet. 121(8):1419–1430.
  • Mensah JK, Okoli RI, Ohaju-Obodo JO, Eifediyi K. 2008. Phytochemical, nutritional and medical properties of some leafy vegetables consumed by Edo people of Nigeria. Afr J Biotechnol. 7:2304–2309.
  • Milovanov A, Zvyagin A, Daniyarov A, Kalendar R, Troshin L. 2019. Genetic analysis of the grapevine genotypes of the Russian Vitis ampelographic collection using iPBS markers. Genetica. 147(1):91–101.
  • Ndam N, Nkefor J, Blackmore P. 2001. Domestication of Gnetum africanum and G. buchholzianum (Gnetaceae), over-exploited wild forest vegetables of Central African Region. Syst Geogr Plt. 71(2):739–745.
  • Nemli S, Kianoosh T, Tanyolac MB. 2015. Genetic diversity and population structure of common bean (Phaseolus vulgaris L.) accessions through retrotransposon-based interprimer binding sites (iPBSs) markers. Turk J Agric For. 39:940–948.
  • Onguene NA, Kuyper TW. 2001. Mycorrhizal association in the rain forest of South Cameroon. For Ecol Manag. 140(2–3):277–287.
  • Peakall R, Smouse PE. 2012. GenAlex 6.5: genetic analysis in excel. Population genetic software for teaching and research-an update. Bioinformatics. 28(19):2537–2539.
  • Phong NH, Pongnak W, Soytong K, Poeaim S, Poeaim A. 2016. Diversity of tea (Camellia sinensis) grown in Vietnam based on morphological characteristics and inter-primer binding sites (iPBS) marker. IJAB. 18(02):385–392.
  • Schlüter PM, Harris SA. 2006. Analysis of multilocus fingerprinting data sets containing missing data. Mol Ecol Notes. 6:569–572.
  • Shiembo PN, Newton AC, Leakey R. 1996. Vegetative propagation of Gnetum africanum Welw., a leafy vegetable from West Africa. J Hortic Sci. 71(1):149–155.
  • Smykal P, Bacova-Kerteszova N, Kalendar R, Corander J, Schulman AH, Pavelek M. 2011. Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers. Theor Appl Genet. 122(7):1385–1397.
  • Sunderland TCH, Clark L. 2001. The non-wood forest products of Central Africa: current research and prospects for conservation and development. Rome: FAO; p. 233–236.
  • Swofford DL. 1998. PAUP. Phylogenetic analysis using parsimony (and other methods). Version 4. Sunderland (MA): Sinauer Associates.
  • Tchoundjeu Z, Asaah EK, Anegbeh P, Degrande A, Mbile P, Facheux C, Tsobeng A, Atangana AR, Ngo-Mpeck ML, Simons AJ. 2006. Putting participatory domestication into practice in West and Central Africa. For Trees Livelihoods. 16(1):53–69.
  • Won H, Renner SS. 2003. Horizontal gene transfer from flowering plants to Gnetum. Proc Natl Acad Sci USA. 100(19):10824–10829.
  • Won H, Renner SS. 2006. Dating dispersal and radiation in the gymnosperm Gnetum (Gnetales) - crop calibration when outgroup relationships are uncertain. Syst Biol. 55(4):610–622.

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