Identification and phylogenetic analysis of sine‐R Retroposon family in cDNA Library of human fetal brain

References

• Akopov , SB , Nikolaev , LG , Khil , PP , Lebedev , YB and Sverdlov , ED . 1998 . Long terminal repeats of human endogenous retrovirus K family (HERV‐K) specifically bind host cell nuclear proteins . FEBS Lett , 421 : 229 – 233 .
   PubMed Web of Science ®Google Scholar
• Altschul , SF , Madden , TL , Schffer , AA , Zhang , J , Zhang , Z , Miller , W and Lipman , J . 1997 . Gapped BLAST and PSI‐BLAST: a new generation of protein database search programs . Nucleic Acids Res , 25 : 3389 – 3402 .
   PubMed Web of Science ®Google Scholar
• Baltimore , D . 1985 . Retroviruses and retrotransposons: the role of reverse transcription in shaping the eukaryotic genome . Cell , 40 : 481 – 482 .
   PubMed Web of Science ®Google Scholar
• Carroll , MC , Campbell , RD , Bentley , DR and Porter , RR . 1984 . A molecular map of the human major histocompatibility complex class III region linking complement genes C4, C2 and factor B . Nature , 307 : 237 – 241 .
   PubMed Web of Science ®Google Scholar
• Crow , TJ . 1984 . A re‐evaluation of the viral hypothesis: is psychosis the result of retroviral integration at a site close to the cerebral dominance gene? . Br J Psychiatry , 145 : 243 – 253 .
   PubMed Web of Science ®Google Scholar
• Kim , HS , Chen , Y and Lonai , P . 1998 . Complex regulation of multiple cytohesin like genes in murine tissues and cells . FEBS Lett , 433 : 312 – 316 .
   PubMed Web of Science ®Google Scholar
• Kim , HS and Crow , TJ . 1999 . Presence and phylogenetic relationships of a hominoid‐specific retroposon family on the human Y chromosome . Zool Sci , 16 : 963 – 970 .
   Web of Science ®Google Scholar
• Kim , HS and Crow , TJ . 2000 . Phylogenetic relationships of a class of hominoid‐specific retroelements (SINE‐R) on human chromosomes 7 and 17 . Ann Hum Biol , 27 : 83 – 93 .
   PubMed Web of Science ®Google Scholar
• Kim , HS and Crow , TJ . 2001 . Cloning and phytogeny of endogenous retroviral elements belonging to the HERV‐K LTR in cDNA library of human fetal brain and Xq21.3 region linked to psychosis . Korean J Genet , 23 : 129 – 134 .
   Google Scholar
• Kim , HS , Hirai , H and Takenaka , O . 1996 . Molecular features of the TSPY gene of gibbons and old world monkeys . Chrom Res , 4 : 500 – 506 .
   PubMed Web of Science ®Google Scholar
• Kim , HS , Hyun , BH , Choi , JY and Crow , TJ . 2000a . Phylogenetic analysis of a retroposon family as represented on the human X chromosome . Genes Genet Syst , 75 : 197 – 202 .
   PubMed Web of Science ®Google Scholar
• Kim , HS , Hyun , BH and Crow , TJ . 2000b . Phylogenetic analysis of retroposon family as exemplified on human chromosome 13: further evidence for recent proliferation . Mol Cells , 10 : 356 – 360 .
   PubMed Web of Science ®Google Scholar
• Kim , HS and Lee , YC . 2001 . Identification and phylogenetic analysis of long terminal repeat elements of the human endogenous retrovirus K family (HERV‐K) from a human brain cDNA library . Korean J Biol Sci , 5 : 133 – 137 .
   Google Scholar
• Kim , HS and Takenaka , O . 2001 . Phytogeny of SINE‐R retroposons in Asian apes . Mol Cells , in press
   Web of Science ®Google Scholar
• Kim , HS , Takenaka , O and Crow , TJ . 1999a . Cloning and nucleotide sequence of retroposons specific to hominoid primates derived from an endogenous retrovirus (HERV‐K) . AIDS Res Hum Retroviruses , 15 : 595 – 601 .
   PubMed Web of Science ®Google Scholar
• Kim , HS , Wade kar , RV , Takenaka , O , Winstanley , C , Mitsunaga , F , Kageyama , T , Hyun , BH and Crow , TJ . 1999b . SINE‐R.C2 (a Homo sapiens specific retroposon) is homologous to cDNA from post‐mortem brain in schizophrenia and to two loci in the Xq21.3/Yp block linked to handedness and psychosis . Am J Med Genet , 88 : 560 – 566 .
   PubMed Web of Science ®Google Scholar
• Kim , HS , Wadekar , RV , Takenaka , O , Hyun , BH and Crow , TJ . 1999c . Phylogenetic analysis of a retroposon family in African great apes . J Mol Evol , 49 : 699 – 702 .
   PubMed Web of Science ®Google Scholar
• Kobayashi , K , Nakahori , Y , Mtyake , M , Matsumura , K , Kondo‐lida , E , Nomura , Y , Segawa , M , Yoshioka , M , Saito , K , Osawa , M , Hamano , K , Sakakihara , Y , Nonaka , I , Nakagome , Y , Kana‐zawa , I , Nakamura , Y , Tokunaga , K and Toda , T . 1998 . An ancient retrotransposal insertion causes Fukuyama‐type congenital muscular dystrophy . Nature , 394 : 388 – 392 .
   PubMed Web of Science ®Google Scholar
• Kumar , S , Tamura , K and Nei , M . 1993 . MEGA: Molecular Evolutionary Genetics Analysis, Version 1.01 , University Park : The Pennsylvania State University .
   Google Scholar
• Laval , SH , Dann , J , Butler , RJ , Loftus , J , Rue , J , Leask , SJ , Bass , N , Comazzi , M , Vita , A , Nanko , S , Shaw , S , Peterson , P , Shields , G , Smith , AB , Stewart , J , DeLisi , LE and Crow , TJ . 1998 . Evidence for linkage to psychosis and cerebral asymmetry (relative hand skill) on the X chromosome . Am J Med Genet , 81 : 420 – 427 .
   PubMed Web of Science ®Google Scholar
• Mager , DL and Freeman , JD . 1995 . HERV‐H endogenous retroviruses: presence in the New World branch but amplification in the old world primate lineage . Virology , 213 : 395 – 404 .
   PubMed Web of Science ®Google Scholar
• Ono , M , Kawakami , M and Takezawa , T . 1987 . A novel human nonviral retroposon derived from an endogenous retrovirus . Nucleic Acids Res , 21 : 8725 – 8737 .
   Web of Science ®Google Scholar
• Steinhuber , S , Brack , M , Hunsmann , G , Schwelberger , H , Dierich , MP and Vogetseder , W . 1995 . Distribution of human endogenous retrovirus HERV‐K genomes in humans and different primates . Hum Genet , 96 : 188 – 192 .
   PubMed Web of Science ®Google Scholar
• Sverdlov , ED . 1998 . Perpetually mobile footprints of ancient infections in human genome . FEBS Lett , 428 : 1 – 6 .
   PubMed Web of Science ®Google Scholar
• Tajima , F and Nei , M . 1984 . Estimation of evolutionary distance between nucleotide sequences . Mol Biol Evol , 1 : 269 – 285 .
   PubMed Web of Science ®Google Scholar
• Yee , F , Johnston , NL , Leister , F , Li , S , Ross , CA , Torrey , EF , Yolken , RH and Consortium , Stanley Neuropathology . 1998 . Differential expression of viral and virus‐associated RNA transcripts of the brains of individuals with schizophrenia and bipolar disorder . Schzophr Res , 29 : 92
   Web of Science ®Google Scholar
• Zhu , ZB , Hsieh , SL , Bentley , DR , Campbell , RD and Volanakis , JE . 1992 . A variable number of tandem repeats locus within the human complement C2 gene is associated with a retroposon derived from a human endogenous retrovirus . J Exp Med , 175 : 1783 – 1787 .
   PubMed Web of Science ®Google Scholar
• Zhu , ZB , Jian , B and Volanakis , JE . 1994 . Ancestry of SINE‐R.C2 a human‐specific retroposon . Hum Genet , 93 : 545 – 551 .
   PubMed Web of Science ®Google Scholar
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   Google Scholar