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Research Articles

Fungal Clusters and Their Uniqueness in Geographically Segregated Wetlands: A Step Forward to Marsh Conservation for a Wealth of Future Fungal Resources

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Pages 351-363 | Received 24 Oct 2019, Accepted 01 Jul 2020, Published online: 06 Aug 2020

References

  • Whitaker V, Matvienko B. The denitrification potential and hydrological conditions in the wetlands of the lobo resevoir. Verh Int Ver Theor Angew Limnol. 1998;26(3):1377–1380.
  • Denny P. Biodiversity and wetlands. Wetl Ecol Manag. 1994;3:55–61.
  • Kuczyńska-Kippen N. Habitat choice in rotifer communities of three shallow lakes: impact of macrophyte substratum and season. Hydrobiologia. 2007;593(1):27–37.
  • Almeida CMR, Oliveira T, Reis I, et al. Bacterial community dynamic associated with autochthonous bioaugmentation for enhanced Cu phytoremediation of salt-marsh sediments. Mar Environ Res. 2017;132:68–78.
  • Arnold G, Van DV. The biology of freshwater wetlands. 2nd ed. Oxford: Oxford University Press; 2002.
  • Ashraf S, Afzal M, Naveed M, et al. Endophytic bacteria enhance remediation of tannery effluent in constructed wetlands vegetated with Leptochloa fusca. Int J Phytoremediat. 2018;20(2):121–128.
  • You YH, Park JM, Park JH, et al. Endophyte distribution and comparative analysis of diversity in wetlands showing contrasting geomorphic conditions. Symbiosis. 2016;69(1):21–36.
  • You YH, Park JM, Park JH, et al. Diversity of endophytic fungi associated with the roots of four aquatic plants inhabiting two wetlands in Korea. Mycobiology. 2015;43(3):231–238.
  • Park JM, Hong JW, Son JS, et al. Strategy for securing unique microbial resources—focusing on Dokdo islands-derived microbial resources. Israel J Ecol Evol. 2018;64(1–4):1–15.
  • MOE (Ministry of Environment. Republic of Korea). 2014. The fifth national report to the convention on biological diversity. April 2014 access to: https://www.cbd.int/nr5/
  • MOE (Ministry of Environment) Republic of Korea Report: Conservation and Sustainable Use of Bio-logical Resources. Access to: Korea Environmental Policy Bulletin http://hdl.handle.net/20.500.11822/9049
  • Ryan MJ, McCluskey K, Verkleij G, et al. Fungal biological resources to support international development: challenges and opportunities. World J Microbiol Biotechnol. 2019;35(9):139.
  • McCluskey K. A review of living collections with special emphasis on sustainability and its impact on research across multiple disciplines. Biopreserv Biobank. 2017;15(1):20–30.
  • Kong WS, David W. The plant geography of Korea with an emphasis on the alpine zones. New York: Springer; 1993.
  • Abarenkov K, Nilsson RH, Larsson KH, et al. The UNITE database for molecular identification of fungi-recent updates and future perspectives. New Phytol. 2010;186(2):281–285.
  • The Geography of Kangwŏndo. NGII (National Geographic Information Institute); 2015.
  • The Geography of Jeollanam-do. NGII (National Geographic Information Institute); 2015.
  • U.S. Salinity Lab Staff. Diagnosis and improvement of saline and alkali soils. In: Richards LA, editor. Agriculture Handbook 60. Washington, DC: USDA; 1954. p. 122–124.
  • FAO, United Nation. Standard operating procedure for soil organic carbon, Walkley-Black method (Titration and colorimetric method). Global Soil Laboratory; 2019.
  • Bremner JM, Mulvaney CS. Chapter 31, Nitrogen total. In: Page AL, editor. Methods of soil analysis: part 2 chemical and microbiological properties, 9.2.2. 2nd ed. Madison, WI: American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America; 1983.
  • Khorsandi F, Yazdi FA. Estimation of saturated paste extracts’ electrical conductivity from 1: 5 soil/water suspension and gypsum. Commun Soil Sci Plant Anal. 2011;42(3):315–321.
  • Masella AP, Bartram AK, Truszkowski JM, et al. PANDAseq: paired-end assembler for illumina sequences. BMC Bioinformatics. 2012;13(1):31.
  • Schloss PD, Westcott SL, Ryabin T, et al. Introducing Mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009;75(23):7537–7541.
  • Bengtsson Palme J, Ryberg M, Hartmann M, et al. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods Ecol Evol. 2013;4(10):914–919.
  • Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–336.
  • Edgar RC, Haas BJ, Clemente JC, et al. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011;27(16):2194–2200.
  • Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26(19):2460–2461.
  • Heck KL, van Belle G, Simberloff D. Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology. 1975;56(6):1459–1461.
  • Lambshead PJD, Platt HM, Shaw KM. The detection of differences among assemblages of marine benthic species based on an assessment of dominance and diversity. J Nat Hist. 1983;17(6):859–874.
  • Chao A, Shen TJ. Program SPADE (Species Prediction and Diversity Estimation) program and user’s guide available at http://chao.stat.nthu.edu.tw; 2003.
  • Bennett AE, Bever JD. Mycorrhizal species differentially alter plant growth and response to herbivory. Ecology. 2007;88(1):210–218.
  • Giridhar Babu A, Sudhakara Reddy M. Diversity of arbuscular mycorrhizal fungi associated with plants growing in fly ash pond and their potential role in ecological restoration. Curr Microbiol. 2011;63(3):273–280.
  • Wilde P, Manal A, Stodden M, et al. Biodiversity of arbuscular mycorrhizal fungi in roots and soils of two salt marshes. Environ Microbiol. 2009;11(6):1548–1561.
  • Hibbett DS, Binder M, Bischoff JF, et al. A higher-level phylogenetic classification of the fungi. Mycol Res. 2007;11(Pt 5):509–547.
  • Alexopoulos CJ, Mims CW, Blackwell M. Introductory mycology. 4th ed. New York: John Wiley & Sons, Inc.; 1996.
  • Sparrow FK. Aquatic phycomyetes. 2nd ed. Ann Arbor: The University of Michigan Press; 1960.
  • Gleason FH, Scholz B, Jephcott TG, et al. Key ecological roles for zoosporic true fungi in aquatic habitats. Microbiol Spectr. 2017;5(2). DOI:10.1128/microbiolspec.FUNK-0038-2016.
  • Marcel B, John W, Denys O. The mushrooms and toadstools of Britain and north-western Europe. London: Hodder & Stoughton Ltd.; 1987.
  • Nguyen HD, Nickerson NL, Seifert KA. Basidioascus and Geminibasidium: a new lineage of heat-resistant and xerotolerant basidiomycetes. Mycologia. 2013;105(5):1231–1250.
  • Tak HI, Ahmad F, Babalola OO. Advances in the application of plant growth-promoting rhizobacteria in phytoremediation of heavy metals. Rev Environ Contam Toxicol. 2013;223:33–52.
  • Li HB, Singh RK, Singh P, et al. Genetic diversity of nitrogen-fixing and plant growth promoting Pseudomonas species isolated from sugarcane rhizosphere. Front Microbiol. 2017;8:1268.
  • Rohini S, Aswani R, Kannan M, et al. Culturable endophytic bacteria of ginger rhizome and their remarkable multi-trait plant growth-promoting features. Curr Microbiol. 2018;75(4):505–511.
  • Wang Z, Li T, Wen X, et al. Fungal communities in rhizosphere soil under conservation tillage shift in response to plant growth. Front Microbiol. 2017;8:1301.
  • Dennis DJ. Observations of fungus gnat damage to glasshouse cucumber. NZJ Exp Agric. 1978;6(1):83–84.
  • Kalb DW, Millar RL. Dispersal of Verticillium alboatrum by the fungus gnat (Bradysia impatiens). Plant Dis. 1986;70(8):752–753.
  • Ludwig WW, Oetting RD. Evaluation of medium treatments for management of Frankliniella occidentalis (Thripidae: Thysanoptera) and Bradysia coprophila (Diptera: Sciaridae). Pest Manag Sci. 2001;57(12):1114–1118.
  • Barson G, Renn N, Bywater AF. Laboratory evaluation of six species of entomopathogenic fungi for the control of the house fly (Musca domestica L.), a pest of intensive animal units. J Invertebr Pathol. 1994;64(2):107–113.
  • Bandani AR. Effect of entomopathogenic fungus Tolypocladium species metabolite efrapeptin on Galleria mellonella agglutinin. Commun Agric Appl Biol Sci. 2004;69(3):165–169.
  • Krasnoff SB, Gupta S. Identification of the antibiotic phomalactone from the entomopathogenic fungus Hirsutella thompsonii var. synnematosa. J Chem Ecol. 1994;20(2):293–302.