Taxonomical Study of Noteworthy Species of Botryosphaeria in Japan

References

• Cesati V, Notaris G. d. Schema di classificazione degli sferiacei italici aschigeri piu’ o meno appartenenti al genere Sphaeria nell’antico significato attribuitoglide Persoon. Commentario Soc Crittogamologica Ital. 1863;4:177–240.
   Google Scholar
• Crous PW, Slippers B, Wingfield MJ, et al. Phylogenetic lineages in the Botryosphaeriaceae. Stud Mycol. 2006;55:235–253.
   PubMed Web of Science ®Google Scholar
• Liu JK, Phookamsak R, Doilom M, et al. Towards a natural classification of Botryosphaeriales. Fungal Divers. 2012;57(1):149–210.
   Web of Science ®Google Scholar
• Phillips AJL, Alves A, Abdollahzadeh J, et al. The Botryosphaeriaceae: genera and species known from culture. Stud Mycol. 2013;76(1):51–167.
   PubMed Web of Science ®Google Scholar
• Phillips AJL, Hyde KD, Alves A, et al. Families in Botryosphaeriales: a phylogenetic, morphological, and evolutionary perspective. Fungal Divers. 2019;94(1):1–22.
   Web of Science ®Google Scholar
• Slippers B, Wingfield MJ. Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact. Fungal Biol Revol. 2007;21(2-3):90–106.
   Google Scholar
• Marsberg A, Kemler M, Jami F, et al. Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health. Mol Plant Pathol. 2017;18(4):477–488.
   PubMed Web of Science ®Google Scholar
• Adair RJ, Burgess T, Serdani M, et al. Fungal associations in Asphondylia (Diptera: Cecidomyiidae) galls from Australia and South Africa: Implications for biological control of invasive acacias. Fungal Ecol. 2009;2(3):121–134.
   Google Scholar
• Park I, Sanogo S, Hanson SF, et al. Molecular identification of Botryosphaeria dothidea as a fungal associate of the gall midge Asphondylia prosopidis on mesquite in the United States. BioControl. 2019;64(2):209–219.
   Web of Science ®Google Scholar
• Zimowska B, Okoń S, Becchimanzi A, et al. Phylogenetic characterization of Botryosphaeria strains associated with Asphondylia galls on species of Lamiaceae. Diversity. 2020;12(2):41.
   Google Scholar
• Slippers B, Crous PW, Denman S, et al. Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. Mycologia. 2004;96(1):83–101.
   PubMed Web of Science ®Google Scholar
• Dissanayake AJ, Phillips AJL, Hyde KD, et al. Botryosphaeriaceae: current status of genera and species. Mycosphere. 2016;7(7):1001–1073.
   Web of Science ®Google Scholar
• Chen Y, Dissanayake AJ, Liu Z, et al. Additions to Karst Fungi 4: Botryosphaeria spp. associated with woody hosts in Guizhou Province, China including B. guttulata sp. nov. Phytotaxa. 2020;454(3):186–202.
   Web of Science ®Google Scholar
• The database of the common names of plant diseases in Japan [internet]. Ibaraki: The Genetic Resources Center, NARO (National Agriculture and Food Research Organization); 2020. [cited 2020 Sep 20]. Available from: https://www.gene.affrc.go.jp/databases-micro_pl_diseases.php.
   Google Scholar
• Hattori Y, Akiba M, Nakashima C. Taxonomic re-examination of Botryosphaeriaceae causing tree disease. Tree Forest Health. 2019;23:42–43.
   Google Scholar
• White TJ, Bruns T, Lee S, et al. Amplified and direct sequencing of fungal ribosomal RNA genes for phylogenies. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ. (eds.), PCR protocols: a guide to methods and applications. Academic Press, San Diego, 1990. p. 315–322.
   Google Scholar
• Carbone I, Kohn LM. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologica. 1999;91(3):553–556.
   Google Scholar
• Glass NL, Donaldson GC. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol. 1995;61(4):1323–1330.
   PubMed Web of Science ®Google Scholar
• Liu YJ, Whelen S, Hall BD. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol. 1999;16(12):1799–1808.
   PubMed Web of Science ®Google Scholar
• Ohata K, Araki T, Kiso A, et al. 1995. Sakumotsu byougenkinn kenkyu gihou no kiso -bunri・baiyou・sessyu. Tokyo: Japan Plant Protection Association; 1995.
   Google Scholar
• Katoh K, Rozewicki J, Yamada KD. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform. 2019;20(4):1160–1166.
   PubMed Web of Science ®Google Scholar
• Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22(21):2688–2690.
   PubMed Web of Science ®Google Scholar
• Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39(4):783–791.
   PubMed Web of Science ®Google Scholar
• Bouckaert R, Vaughan TG, Barido-Sottani J, et al. BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Comput Biol. 2019;15(4):e1006650.
   PubMed Web of Science ®Google Scholar
• Slippers B, Roux J, Wingfield MJ, et al. Confronting the constraints of morphological taxonomy in the Botryosphaeriales. Persoonia. 2014;33:155–168.
   Web of Science ®Google Scholar
• Ariyawansa HA, Hyde KD, Liu JK, et al. Additions to Karst Fungi 1: Botryosphaeria minutispermatia sp. nov., from Guizhou Province, China. Phytotaxa. 2016;275(1):35–44.
   Web of Science ®Google Scholar
• Li GQ, Liu FF, Li JQ, et al. Botryosphaeriaceae from Eucalyptus plantations and adjacent plants in China. Persoonia. 2018;40:63–95.
   PubMed Web of Science ®Google Scholar
• Zhou Y, Dou Z, He W, et al. Botryosphaeria sinensia sp. nov., a new species from China. Phytotaxa. 2016;245(1):43–50.
   Web of Science ®Google Scholar
• Sawada K. Fungi inhabiting conifers in the Tohoku district. II. Fungi on various conifers except ‘Sugi. Bulletin of the Government Forest Experimental Station Meguro. 1950;46:144–148.
   Google Scholar
• Shang YZ. Taxonomic study on the pathogen fungus of shoot blight of larch. Acta Mycol Sinica. 1987;6:248–249.
   Google Scholar
• Sawada K. Descriptive catalogue of Taiwan (Formosan) fungi. Part XI. Special Publication College of Agriculture National Taiwan University. 1959;8:1–268.
   Google Scholar
• Yukawa J, Ohsaki N. Separation of the Aucaba fruit midge, Asphondylia aucubae sp. nov. from the ampelopsis fruit midge, Asphondylia baca MONZEN (Diptera, Cecidomyiidae). Kontyu, Tokyo. 1988;56:365–376.
   Google Scholar
• Harada Y, Usuta Y, Yoshida Y. Warty Stem Blight of Aucuba japonica, a new disease caused by Botryosphaeria sp. (abstracts presented at the Meeting of the Tohoku Division). Jpn J Phytopathol. 1996;62:601.
   Google Scholar
• The U.S. Department of Agriculture fungal host database [internet]. Washington, D.C: United States　Department of Agriculture; 2020. [cited 2020 Sep 20]. Available from: https://nt.ars-grin.gov/fungaldatabases/fungushost/fungushost.cfm.
   Google Scholar