Penicillium vietnamense sp. nov., the First Novel Marine Fungi Species Described from Vietnam with a Unique Conidiophore Structure and Molecular Phylogeny of Penicillium Section Charlesia

References

• Biourge P. Les moissisures du groupe Penicillium link. La Cellule. 1923;33:7–331.
   Google Scholar
• Samson RA, Yilmaz N, Houbraken J, et al. Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium. Stud Mycol. 2011;70(1):159–183.
   PubMed Web of Science ®Google Scholar
• Visagie CM, Houbraken J, Frisvad JC, et al. Identification and nomenclature of the genus Penicillium. Stud Mycol. 2014;78:343–371.
   PubMed Web of Science ®Google Scholar
• Hou X, Zhang X, Xue M, et al. Recent advances in sorbicillinoids from fungi and their bioactivities (covering 2016-2021). J Fungi. 2022;8(1):62.
   Google Scholar
• Klas KR, Kato H, Frisvad JC, et al. Structural and stereochemical diversity in prenylated indole alkaloids containing the bicyclo[2.2.2]diazaoctane ring system from marine and terrestrial fungi. Nat Prod Rep. 2018;35(6):532–558.
   PubMed Web of Science ®Google Scholar
• Li K, Chen S, Pang X, et al. Natural products from mangrove sediments-derived microbes: structural diversity, bioactivities, biosynthesis, and total synthesis. Eur J Med Chem. 2022;230:114117.
   Google Scholar
• Liu S, Su M, Song SJ, et al. Marine-derived Penicillium species as producers of cytotoxic metabolites. Mar Drugs. 2017;15(10):329.
   PubMed Web of Science ®Google Scholar
• Wang X, Li Y, Zhang X, et al. Structural diversity and biological activities of the cyclodipeptides from fungi. Molecules. 2017;22(12):2026.
   Google Scholar
• Peterson SW. 2000. Phylogenetic analysis of Penicillium species based on ITS and LSU-rDNA nucleotide sequences. In: Samson RA, Pitt JI, editors. Integration of modern taxonomic methods for Penicillium and Aspergillus classification. Amsterdam (The Netherlands): Harwood Academic Publishers; p. 163–178.
   Google Scholar
• Peterson SW. Multilocus DNA sequence analysis shows that Penicillium biourgeianum is a distinct species closely related to P. brevicompactum and P. olsonii. Mycol Res. 2004;108(4):434–440.
   Google Scholar
• Pham TT, Dinh VK, Nguyen VD. Biodiversity and enzyme activity of marine fungi with 28 new records from the tropical coastal ecosystems in Vietnam. Mycobiology. 2021;49(6):559–581.
   Google Scholar
• O’Callaghan B. 2008. Vietnam: a collaborative approach to MPA development. Gland (Switzerland): The World Conservation Union.
   Google Scholar
• Dung LD. Nha Trang Bay marine protected area, Vietnam: initial trends in coral structure and some preliminary linkages between these trends and human activities (2002–2005). Aquat Ecosyst Health Manag. 2009;12(3):249–257.
   Web of Science ®Google Scholar
• Girich EV, Yurchenko AN, Smetanina OF, et al. Neuroprotective metabolites from Vietnamese marine derived fungi of Aspergillus and Penicillium genera. Mar Drugs. 2020;18(12):608.
   PubMed Web of Science ®Google Scholar
• Latypov YY. Some data on the composition and structure of coral communities in the Littoral and sublittoral in the province of Khanh Hoa, Vietnam. J Mar Sci Res Dev. 2014;4:1.
   Google Scholar
• Nguyen VD, Le MH, Trang ST. 2013. Application of probiotics from marine microbes for sustainable marine aquaculture development. In: Kim S-K, editor. Marine microbiology: bioactive compounds and biotechnological applications. Weinheim (Germany): Wiley; p. 307–349.
   Google Scholar
• Pham TT, Ho THN, Nguyen VD. Screening for bacteriocin-like antimicrobial activity against shrimp pathogenic vibrios and molecular identification of marine bacteria from otter clam Lutraria philippinarum. Thai J Vet Med. 2014;1:345–353.
   Google Scholar
• Li L, Singh P, Liu Y, et al. Diversity and biochemical features of culturable fungi from the coastal waters of Southern China. AMB Express. 2014;4:60.
   PubMed Web of Science ®Google Scholar
• Pitt JI. 1979. The genus Penicillium, and its teleomorphic states eupenicillium, and talaromyces. London (UK): Academic Press.
   Google Scholar
• Choi DH, You YH, Lee IS, et al. Penicillium ulleungdoense sp. nov. from Ulleung Island in Korea. Mycobiology. 2020;49(1):46–53.
   Web of Science ®Google Scholar
• Toju H, Tanabe AS, Yamamoto S, et al. High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. PLoS One. 2012;7(7):e40863.
   PubMed Web of Science ®Google Scholar
• White TJ, Bruns T, Lee S. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Shinsky TJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York (NY): Academic Press Inc.; p. 315–322.
   Google Scholar
• Kurtzman CP, Robnett CJ. Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5' end of the large-subunit (26S) ribosomal DNA gene. J Clin Microbiol. 1997;35(5):1216–1223.
   PubMed Web of Science ®Google Scholar
• Glass NL, Donaldson GC. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl Environ Microbiol. 1995;61(4):1323–1330.
   PubMed Web of Science ®Google Scholar
• Houbraken J, Spierenburg H, Frisvad JC. Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species. Antonie Van Leeuwenhoek. 2012;101(2):403–421.
   Google Scholar
• Kumar S, Stecher G, Li M, et al. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–1549.
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, et al. Clustal W and clustal X version 2.0. Bioinformatics. 2007;23(21):2947–2948.
   PubMed Web of Science ®Google Scholar
• Saitou N, Nei M. The Neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4(4):406–425.
   PubMed Web of Science ®Google Scholar
• Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39(4):783–791.
   PubMed Web of Science ®Google Scholar
• Tamura K. Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Mol Biol Evol. 1992;9:678–687.
   PubMed Web of Science ®Google Scholar
• Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 1993;10(3):512–526.
   PubMed Web of Science ®Google Scholar
• Houbraken J, Kocsubé S, Visagie CM, et al. Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): an overview of families, genera, subgenera, sections, series and species. Stud Mycol. 2020;95:5–169.
   PubMed Web of Science ®Google Scholar
• Crous PW, Wingfield MJ, Lombard L, et al. Fungal planet description sheets: 951–1041. Persoonia. 2019;43:223–425.
   PubMed Web of Science ®Google Scholar
• Thom C. Cultural studies of species of Penicillium. USDA Bur Animal Ind Bull. 1910;118:1–107.
   Google Scholar
• Sandhu DK, Sandhu RS. A new species of Penicillium isolated from sputum. Can J Bot. 1963;41(8):1273–1274.
   Google Scholar
• Crous PW, Carnegie AJ, Wingfield MJ, et al. Fungal planet description sheets: 868–950. Persoonia. 2019;42:291–473.
   PubMed Web of Science ®Google Scholar
• Martinez AT, Calvo MA, Ramirez C. Scanning electron microscopy of Penicillium conidia. Antonie Van Leeuwenhoek. 1982;48(3):245–255.
   Google Scholar
• Agurell SL. Costaclavine from Penicillium chermesinum. Experientia. 1964;20(1):25–26.
   Google Scholar
• Hwu L, Cho C-J, Tzeanz S. Nucleotide sequence and the action of ribotoxin gene (sar gene) of Penicillium isolates from Taiwan. Bot Bull Acad Sinica. 2001;42:101–107.
   Google Scholar
• Huang H, Feng X, Xiao Z, et al. Azaphilones and p-terphenyls from the mangrove endophytic fungus Penicillium chermesinum (ZH4-E2) isolated from the South China sea. J Nat Prod. 2011;74(5):997–1002.
   PubMed Web of Science ®Google Scholar
• Darsih C, Prachyawarakorn V, Wiyakrutta S, et al. Cytotoxic metabolites from the endophytic fungus Penicillium chermesinum: discovery of a cysteine-targeted Michael acceptor as a pharmacophore for fragment-based drug discovery, bioconjugation and click reactions. RSC Adv. 2015;5(86):70595–70603.
   Google Scholar
• Liu H, Li X-M, Liu Y, et al. Meroterpenoids with a drimane-type spirosesquiterpene skeleton from the marine algal-derived endophytic fungus Penicillium chermesinum EN-480. J Nat Prod. 2016;79(4):806–811.
   PubMed Web of Science ®Google Scholar
• Amend A, Burgaud G, Cunliffe M, et al. Fungi in the marine environment: open questions and unsolved problems. mBio. 2019;10(2):e01189.
   Web of Science ®Google Scholar
• Le H, Do Q, Doan M, et al. Chemical composition and biological activities of metabolites from the marine fungi Penicillium sp. isolated from sediments of Co To Island, Vietnam. Molecules. 2019;24(21):3830.
   Google Scholar