Detection of Potato spindle tuber viroid sequence variants derived from PSTVd-infected Phelipanche ramosa in flower organs of tomato plants

References

• Diener TO, Smith DR. Potato spindle tuber viroid. VI. Monodisperse distribution after electrophoresis in 20 per cent polyacrylamide gels. Virology. 1971;46:498–499.
   PubMed Web of Science ®Google Scholar
• Keese P, Symons RH. Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution. Proc Natl Acad Sci USA. 1985;82(14):4582–4586. PubMed PMID: 3860809; PubMed Central PMCID: PMC390429.
   PubMed Web of Science ®Google Scholar
• Flores R, Serra P, Minoia S, Di Serio F, Navarro B. Viroids: from genotype to phenotype just relying on RNA sequence and structural motifs. Front Microbiol. 2012;3:217. doi: 10.3389/fmicb.2012.00217. PubMed PMID: 22719735; PubMed Central PMCID: PMC3376415.
   PubMed Web of Science ®Google Scholar
• Flores R, Gas ME, Molina-Serrano D, Nohales MA, Carbonell A, Gago S, De la Peña M, Daròs JA. Viroid replication: rolling-circles, enzymes and ribozymes. Viruses. 2009;1(2):317–334. doi: 10.3390/v1020317. PubMed PMID: 21994552; PubMed Central PMCID: PMC3185496.
   PubMed Web of Science ®Google Scholar
• Flores R, Grubb D, Elleuch A, Nohales MA, Delgado S, Gago S. Rolling-circle replication of viroids, viroid-like satellite RNAs and hepatitis delta virus: variations on a theme. RNA Biol. 2011;8(2):200–206. PubMed PMID: 21358283.
   PubMed Web of Science ®Google Scholar
• Zhu Y, Green L, Woo YM, Owens R, Ding B. Cellular basis of potato spindle tuber viroid systemic movement. Virology. 2001;279(1):69–77. doi: 10.1006/viro.2000.0724. PubMed PMID: 11145890.
   PubMed Web of Science ®Google Scholar
• Zhu Y, Qi Y, Xun Y, Owens R, Ding B. Movement of potato spindle tuber viroid reveals regulatory points of phloem-mediated RNA traffic. Plant Physiol. 2002;130(1):138–146. doi: 10.1104/pp.006403. PubMed PMID: 12226494; PubMed Central PMCID: PMC166547.
   PubMed Web of Science ®Google Scholar
• Vachev T, Ivanova D, Minkov I, Gozmanova M. [Identification of potato spindle tuber viroid KF440-2 isolate in floral organs of tomato (Solanum lycopersicum)]. Trav Sci Univ Plovdiv Plant. 2011;41(6):7–16. Bulgarian.
   Google Scholar
• Matousek J, Orctova L, Steger G, Skopek J, Moors M, Dedic P, Riesner D. Analysis of thermal stress-mediated PSTVd variation and biolistic inoculation of progeny of viroid “thermomutants” to tomato and Brassica species. Virology. 2004;323(1):9–23. doi: 10.1016/j.virol.2004.02.010. PubMed PMID: 15165815.
   PubMed Web of Science ®Google Scholar
• Nie X. Analysis of sequence polymorphism and population structure of tomato chlorotic dwarf viroid and potato spindle tuber viroid in viroid-infected tomato plants. Viruses. 2012;4(6):940–953. doi: 10.3390/v4060940. PubMed PMID: 22816033; PubMed Central PMCID: PMC3397355.
   PubMed Web of Science ®Google Scholar
• Podstolski W, Gora-Sochacka A, Zagorski W. Co-inoculation with two non-infectious cDNA copies of potato spindle tuber viroid (PSTVd) leads to the appearance of novel fully infectious variants. Acta Biochim Pol. 2005;52(1):87–98. doi: 055201087. PubMed PMID: 15827608.
   PubMed Web of Science ®Google Scholar
• Wiesyk A, Candresse T, Zagorski W, Gora-Sochacka A. Use of randomly mutagenized genomic cDNA banks of potato spindle tuber viroid to screen for viable versions of the viroid genome. J Gen Virol. 2011;92(Pt 2):457–466. doi: 10.1099/vir.0.026286-0. PubMed PMID: 21068216.
   PubMed Web of Science ®Google Scholar
• Gora-Sochacka A, Kierzek A, Candresse T, Zagorski W. The genetic stability of potato spindle tuber viroid (PSTVd) molecular variants. RNA. 1997;3(1):68–74. PubMed PMID: 8990400; PubMed Central PMCID: PMC1369463.
   PubMed Web of Science ®Google Scholar
• Gozmanova M, Denti MA, Minkov IN, Tsagris M, Tabler M. Characterization of the RNA motif responsible for the specific interaction of potato spindle tuber viroid RNA (PSTVd) and the tomato protein Virp1. Nucleic Acids Res. 2003;31(19):5534–5543. PubMed PMID: 14500815; PubMed Central PMCID: PMC206474.
   PubMed Web of Science ®Google Scholar
• Hammond RW. Agrobacterium-mediated inoculation of PSTVd cDNAs onto tomato reveals the biological effect of apparently lethal mutations. Virology. 1994;201(1):36–45. doi: 10.1006/viro.1994.1263. PubMed PMID: 7513926.
   PubMed Web of Science ®Google Scholar
• Qi Y, Ding B. Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA. Plant Cell. 2003;15(6):1360–1374. PubMed PMID: 12782729; PubMed Central PMCID: PMC156372.
   PubMed Web of Science ®Google Scholar
• Wassenegger M, Spieker RL, Thalmeir S, Gast FU, Riedel L, Sanger HL. A single nucleotide substitution converts potato spindle tuber viroid (PSTVd) from a noninfectious to an infectious RNA for Nicotiana tabacum. Virology. 1996;226(2):191–197. doi: 10.1006/viro.1996.0646. PubMed PMID: 8955038.
   PubMed Web of Science ®Google Scholar
• Zhong X, Ding B. Distinct RNA motifs mediate systemic RNA trafficking. Plant Signal Behav. 2008;3(1):58–59. PubMed PMID: 19704772; PubMed Central PMCID: PMC2633962.
   PubMedGoogle Scholar
• Owens RA, Thompson SM. Mutational analysis does not support the existence of a putative tertiary structural element in the left terminal domain of Potato spindle tuber viroid. J Gen Virol. 2005;86(Pt 6):1835–1839. doi: 10.1099/vir.0.80869-0. PubMed PMID: 15914863.
   PubMed Web of Science ®Google Scholar
• Owens RA, Thompson SM, Kramer M. Identification of neutral mutants surrounding two naturally occurring variants of Potato spindle tuber viroid. J Gen Virol. 2003;84(Pt 3):751–756. PubMed PMID: 12604828.
   PubMed Web of Science ®Google Scholar
• Owens RA, Steger G, Hu Y, Fels A, Hammond RW, Riesner D. RNA structural features responsible for potato spindle tuber viroid pathogenicity. Virology. 1996;222(1):144–158. doi: 10.1006/viro.1996.0405. PubMed PMID: 8806495.
   PubMed Web of Science ®Google Scholar
• Matousek J, Stehlik J, Prochazkova J, Orctova L, Wullenweber J, Fussy Z, Kováčik J, Duraisamy GS, Ziegler A, Schubert J, Steger G. Biological and molecular analysis of the pathogenic variant C3 of Potato spindle tuber viroid (PSTVd) evolved during adaptation to chamomile (Matricaria chamomilla). Biol Chem. 2012;393(7):605–615. doi: 10.1515/hsz-2011-0286. PubMed PMID: 22944665.
   PubMed Web of Science ®Google Scholar
• Vachev T, Ivanova D, Minkov I, Tsagris M, Gozmanova M. Trafficking of the Potato spindle tuber viroid between tomato and Orobanche ramosa. Virology. 2010;399(2):187–193. doi: 10.1016/j.virol.2009.12.022. PubMed PMID: 20110096.
   PubMed Web of Science ®Google Scholar
• Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003;31(13):3406–3415. PubMed PMID: 12824337; PubMed Central PMCID: PMC169194.
   PubMed Web of Science ®Google Scholar
• Tsagris M, Tabler M, Sanger HL. Ribonuclease T1 generates circular RNA molecules from viroid-specific RNA transcripts by cleavage and intramolecular ligation. Nucleic Acids Res. 1991;19(7):1605–1612. PubMed PMID: 1709278; PubMed Central PMCID: PMC333922.
   PubMed Web of Science ®Google Scholar
• Papaefthimiou I, Hamilton A, Denti M, Baulcombe D, Tsagris M, Tabler M. Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of post-transcriptional gene silencing. Nucleic Acids Res. 2001;29(11):2395–2400. PubMed PMID: 11376158; PubMed Central PMCID: PMC55696.
   PubMed Web of Science ®Google Scholar
• Weidemann H, Buchta, U. A simple and rapid method for detection of potato spindle tuber viroid by RT-PCR. Potato Res. 1998;41:1–8.
   Web of Science ®Google Scholar
• Zuker, M., 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31(13):3406–3415.
   PubMed Web of Science ®Google Scholar
• Zhong X, Archual AJ, Amin AA, Ding B. A genomic map of viroid RNA motifs critical for replication and systemic trafficking. Plant Cell. 2008;20(1):35–47. doi: 10.1105/tpc.107.056606. PubMed PMID: 18178767; PubMed Central PMCID: PMC2254921.
   PubMed Web of Science ®Google Scholar