Genetic relationship in mulberry (Morus L.) inferred through PCR–RFLP and trnD-trnT sequence data of chloroplast DNA

References

• Orhan E, Ercisli S, Yildirim N, Agar G. Genetic variations among mulberry genotypes (Morus alba) as revealed by Random Amplified Polymorphic DNA (RAPD) markers. Plant Syst Evol. 2007;265:251–258.
   Web of Science ®Google Scholar
• Vijayan K. Genetic relationships of Japanese and Indian mulberry (Morus spp.) genotypes revealed by DNA fingerprinting. Plant Syst Evol. 2004;243:221–232.
   Web of Science ®Google Scholar
• Sharma A, Sharma R, Machii H. Assessment of genetic diversity in a Morus germplasm collection using fluorescence based AFLP markers. Theor Appl Genet. 2000;101:1049–1055.
   Web of Science ®Google Scholar
• Awasthi AK, Nagaraja GM, Naik GV, Kanginakudru S, Thangavelu K, Nagaraju J. Genetic diversity and relationships in mulberry (genus Morus) as revealed by RAPD and ISSR marker assays. BMC Genet. 2004;5:1–8.
   PubMed Web of Science ®Google Scholar
• Vijayan K, Srivastava PP, Awasthi AK. Analysis of phylogenetic relationship among five mulberry (Morus) species using molecular markers. Genome. 2004;47:439–448.
   PubMed Web of Science ®Google Scholar
• Zhao WG, Zhou ZH, Miao XX, Zhang Y, Wang SB, Huang JH, Xiang H, Pan YL. A comparison of genetic variation among wild and cultivated Morus Species (Moraceae: Morus) as revealed by ISSR and SSR markers. Biodivers Conserv. 2006;16:275–290.
   Web of Science ®Google Scholar
• Aggarwal RK, Udaykumar D, Hender PS, Sarkar A, Singh LA. Isolation and characterization of six novel microsatellite markers for mulberry (Morus indica). Mol Ecol Notes. 2004;4:477–479.
   Web of Science ®Google Scholar
• Zhao WG, Miao XX, Ji SH, Pan YL, Huang YP. Isolation and characterization of microsatellite loci from the mulberry, Morus L. Plant Sci. 2005;168:519–525.
   Web of Science ®Google Scholar
• Droogenbroeck Van TB, Kyndt T, Maertens I, Romeijn-Peeters E, Scheldeman X, Romero-Motochi JP, Van Damme P, Goetghebeur P, Gheysen G. Phylogenetic analysis of the highland papayas (Vasconcellea) and allied genera (Caricaceae) using PCR-RFLP. Theor Appl Genet. 2004;108:1473–1486.
   PubMed Web of Science ®Google Scholar
• Parani M, Lakshmi M, Ziegenhagen B, Fladung M, Senthilkumar P, Parida A. Molecular phylogeny of mangroves VII. PCR-RFLP of trnS-psbC and rbcL gene regions in 24 mangrove and mangrove-associate species. Theor Appl Genet. 2000;100:454–460.
   Web of Science ®Google Scholar
• Randall LS, Julie AR, Richard CC, Tosak S, Jonathan FW. The tortoise and the hare: choosing between noncoding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group. Am J Bot. 1998;85:1301–1315.
   PubMed Web of Science ®Google Scholar
• Cui BB, Xu ZH, Jin XJ, Feng H, Li Y, Du NX. [Polymorphism and heredity of cpDNA and mtDNA in the Section Leuce of Populus]. For Stud China. 2011;13:218–224. Chinese).
   Google Scholar
• Hu DC, Zhang QL, Luo ZR. Phylogenetic analysis in some Diospyros spp. (Ebenaceae) and Japanese persimmon using chloroplast DNA PCR-RFLP markers. Sci Hortic. 2008;117:32–38.
   Web of Science ®Google Scholar
• Marie B, Sauphie S, Jean B. Discordant mtDNA and cpDNA phylogenies indicate geographic speciation and reticulation as driving factors for the diversification of the genus Picea. Tree Genet Genomes. 2011;7:469–484.
   Web of Science ®Google Scholar
• Chen RF, Yu MD, Xu L, Zhang Z., Tang Z, Wang QL. [Morus ITS, TrnL-F, rps16 sequence analysis and evaluation of 12 special mulberry resources]. Sci Agric Sinica. 2011;44:1553–1561. Chinese.)
   Google Scholar
• Nepal MP, Ferguson CJ. Phylogenetics of Morus (Moraceae) Inferred from ITS and trnL-trnF sequence data. Syst Bot. 2012;37:442–450.
   Web of Science ®Google Scholar
• Yang GW, Yu MD, Jing CJ, Xiang ZH. The specificity amplification of 16S ribosomal gene in chloroplast of mulberry species. The first academic annual conference of Genetics Society in Chongqing city; 2000 June 30; Chongqing, CHN. Chinese.
   Google Scholar
• Zhao WG, Zhang ZF, Pan YL, He JL, Shi QL. [Studied on the cpDNA trnL-trnF Intergenic Spacer Sequence in the Genus Mulberry]. Sericultural Sci. 2002;28:83–86. Chinese.
   Google Scholar
• Demesure B, Sodzi N, Petit RJ. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol Ecol. 1995;4:129–131.
   PubMed Web of Science ®Google Scholar
• Dumolin-Lapegue S, Pemonge MH, Petit RJ. An enlarged set of consensus primers for the study of organelle DNA in plants. Mol Ecol. 1997;6:393–397.
   PubMed Web of Science ®Google Scholar
• Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgins D. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res. 1997;25:4876–4882.
   PubMed Web of Science ®Google Scholar
• Kumar S, Tamura K, Jakobsen IB, Nei M. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics. 2001;17:1244–1245.
   PubMed Web of Science ®Google Scholar
• Chen DM, Huang MR, Sun XX, Pan YL, Wu CJ. [The mulberry varieties isoenzyme Preliminary Report]. Sericultural Sci. 1980;2:1–4. Chinese.
   Google Scholar
• Ravi V, Khurana JP, Tyagi AK, Khurana P. The chloroplast genome of mulberry: complete nucleotide sequence, gene organization and comparative analysis. Tree Genet Genomes. 2006;3:49–59.
   Web of Science ®Google Scholar
• Petitpierre B, Pairon M, Broennimann O, Jacquemart AL. Plastid DNA variation in Prunus serotina var. serotina (Rosaceae), a North American tree invading Europe. Eur J For Res. 2009;128:431–436.
   Web of Science ®Google Scholar
• Yan C, Sun GL. Multiple origins of allopolyploid wheatgrass Elymus caninus revealed by RPB2, PepC and TrnD/T genes. Mol Phylogenet Evol. 2012;64:441–451.
   PubMed Web of Science ®Google Scholar