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Article; Agriculture and Environmental Biotechnology

Association mapping of cane weight and tillers per plant in sugarcane

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Pages 617-623 | Received 27 May 2014, Accepted 09 Dec 2014, Published online: 20 Apr 2015

References

  • Miller JD, Gilbert RA, Odero DC. Sugarcane botany: a brief review. University of Florida; 2010; SS-AGR-234.
  • Swapna M, Srivastava S. Molecular marker applications for improving sugar content in sugarcane. SpringerBriefs in Plant Sci. 2012;1–49. doi: 07/978-1-4614-2257-0_1
  • Dal-Bianco M, Carneiro MS, Hotta CT, Chapola RG, Hoffmann HP, Garcia AAF, Souza GM. Sugarcane improvement: how far can we go? Curr Opin Biotechnol. 2012;23:265–270.
  • Zhu C, Gore M, Buckler ES, Yu J. Status and prospects of association mapping in plants. Plant Genome. 2008;1:5–20.
  • Mackay IJ, Powell W. The significance and relevance of linkage disequilibrium and association mapping in crops. Trends Plant Sci. 2007;12:57–63.
  • Cordeiro GM, Taylor GO, Henry RJ. Characterization of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species. Plant Sci. 2000;155:161–168.
  • Cordeiro GM, Casu R, McIntyre CL, Manners JM, Henry RJ. Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross-transferable to Erianthus and Sorghum. Plant Sci. 2001;160:1115–1123.
  • Allen GC, Flores-Vergara MA, Krasynanski S, Kumar S, Thompson WF. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethyl ammonium bromide. Nat Protocol. 2006;1:2320–2325.
  • Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14:2611–2620.
  • Bradbury PJ, Zhang Z, Dallas E, Terry K, Casstevens M, Ramdo Y, Edward SB. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics. 2007;23:2633–2635.
  • Selvi A, Nair NV, Noyer JL, Singh NK, Balasundaram N, Bansal KC, Koundal KR, Mohapatra T. Genomic constitution and genetic relationship among the tropical and subtropical Indian sugarcane cultivars revealed by AFLP. Crop Sci. 2005;45:1750–1757.
  • Lan R, Reeves PR. 2007. Amplified fragment length polymorphism analysis of Salmonella enterica. Methods Mol Biol. 2007;394:119–32.
  • Fry NK, Savelkoul PH, Visca P. Amplified fragment-length polymorphism analysis. Methods Mol Biol. 2009;551:89–104.
  • Kumar A, Misra P, Dube A. Amplified fragment length polymorphism: an adept technique for genome mapping, genetic differentiation, and intraspecific variation in protozoan parasites. Parasitol Res. 2013;112(2):457–466.
  • Zhang D, Mischke S, Goenaga R, Hemeida AA. Accuracy and reliability of high-throughput microsatellite genotyping for Cacao clone identification. Crop Sci. 2006;46:2084–2092.
  • Park JH, Suresh S, Piao XM, Cho GT, Lee SY, Baek HJ, Lee CW, Chung JW. Application of simple sequence repeat (SSR) markers for the discrimination of Korean and Chinese sesame (Sesamum indicum L.) accessions. Plant Breed Biotechnol. 2014;2:80–87.
  • Glynn NC, Mccorkle K, Comstock JC. Diversity among mainland USA sugarcane cultivars examined by SSR genotyping. Am Soc Sugar Cane Technologists. 2009;29:36–52.
  • Liu C, Fan X, Jiang J, Guo D, Sun H, Zhang Y, Feng J. Genetic diversity of chinese wild grape species by SSR and SRAP markers. Biotechnol Biotechnological Equipment. 2012;26(2):2899–2903.
  • Hoarau JY, Grivet L, Offmann B, Raboin LM, Diorflar JP, Payet J, Hellmann M, D'Hont A, Glaszmann JC. Genetic dissection of a modern sugarcane cultivar (Saccharum spp.). II. Detection of QTLs for yield components. Theor Appl Genet. 2002;105(6–7):1027–1037.
  • Da Silva JA, Bressiani JA. Sucrose synthase molecular marker associated with sugar content in elite sugarcane progeny. Genet Mol Bio. 2005;28:294–298.
  • Pinto LR, Garcia AAF, Pastina MM, Teixeira LHM, Bressiani JA, Ulian EC, Bidoia MAP, Souza AP. Analysis of genomic and functional RFLP derived markers associated with sucrose content, fiber and yield QTLs a in sugarcane (Saccharum spp.) commercial cross. Euphytica. 2010;172:313–327.
  • Pastina MM, Malosetti M, Gazaffi R, Mollinari M, Margarido GRA, Oliveira KM, Pinto LR, Souza AP, van Eeuwijk FA, Garcia AAF. A mixed model QTL analysis for sugarcane multiple-harvest-location trial data. Theor Appl Genet. 2012;124:835–849.
  • Kapoor R, Duttamajumder SK, Rao KK. A breeder's perspective on the tiller dynamics in sugarcane. Curr Sci. 2011;100:2–25.
  • Hameed U, Pan YB, Muhammad K, Afghan S, Iqbal J. Use of simple sequence repeat markers for DNA fingerprinting and diversity analysis of sugarcane (Saccharum spp.) cultivars resistant and susceptible to red rot. Genet Mol Res. 2012;11(2):1195–1204.
  • Ming R, Liu SC, Moore PH, Irvine JE, Paterson AH. QTL analysis in a complex autopolyploid: genetic control of sugar content in sugarcane. Genomic Res. 2001;11:2075–2084.
  • Ming R, Wang YW, Draye X, Moore PH, Irvine JE, Paterson AH. Molecular dissection of complex traits in autopolyploids: mapping QTLs affecting sugar yield and related traits in sugarcane. Theor Appl Genet. 2002;105:332–345.
  • Husnain Z, Afghan S. Screening of sugarcane diseases. Annual Progress Report. Jhang: Shakarganj Sugar Research Institute; 2004.
  • Jahangir GZ, Nasir IA, Iqbal M. Disease free and rapid mass production of sugarcane cultivars. Advanced Life Sci. 2014;1(3):1–8.
  • Haider MS, Afghan S, Riaz H, Tahir M, Javed MA, Rashid N, Iqbal J. Identification of two sugarcane mosaic virus (SCMV) variants from naturally infected sugarcane crop in Pakistan. Pakistan J Bot. 2011;43(2):1157–1162.
  • Shahid Z, Ahmad A, Javed MR. Integrated application of fertilizers and biocane (organic fertilizers) to enhance the productivity and juice quality of autumn planted sugarcane (Saccharum officinarum L.). Afr J Agric Res. 2011;6(21):4857–4861.