Diversity of ammonia-oxidizing bacteria in relation to soil environment in Ebinur Lake Wetland

References

• Liu B, Li Y, Zhang J, et al. Abundance and diversity of ammonia-oxidizing microorganisms in the sediments of Jinshan Lake. Curr Microbiol. 2014;69(5):751–757.
   PubMed Web of Science ®Google Scholar
• Xu W, Li M, Ding JF, et al. Bacteria dominate the ammonia-oxidizing community in a hydrothermal vent site at the Mid-Atlantic Ridge of the South Atlantic Ocean. Appl Microbiol Biotechnol. 2014;98(18):7993–8004.
   PubMed Web of Science ®Google Scholar
• Gieseke A, Tarre S, Green M, et al. Nitrification in a biofilm at low pH values: role of in situ microenvironments and acid tolerance. Appl Environ Microbiol. 2006;72(6):4283–4292.
   PubMed Web of Science ®Google Scholar
• Dorador C, Busekow A, Vila I, et al. Molecular analysis of enrichment cultures of ammonia oxidizers from the Salar de Huasco, a high altitude saline wetland in northern Chile. Extremophiles. 2008;12(3):405–414.
   PubMed Web of Science ®Google Scholar
• Chen Y, Zhen Y, He H, et al. Diversity, abundance, and spatial distribution of ammonia-oxidizing β-proteobacteria in sediments from Changjiang Estuary and its adjacent area in East China Sea. Microbial Ecol. 2014;67(4):788–803.
   PubMed Web of Science ®Google Scholar
• Purkhold U, Wagner M, Timmermann G, et al. 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads. Int J Syst Evol Microbiol. 2003;53(5):1485–1494.
   PubMed Web of Science ®Google Scholar
• Purkhold U, Pommerening-Roser A, Juretschko S, et al. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol. 2000;66(12):5368–5382.
   PubMed Web of Science ®Google Scholar
• Sher Y, Zaady E, Nejidat A. Spatial and temporal diversity and abundance of ammonia oxidizers in semi-arid and arid soils: indications for a differential seasonal effect on archaeal and bacterial ammonia oxidizers. FEMS Microbiol Ecol. 2013;86(3):544–556.
   PubMed Web of Science ®Google Scholar
• Jin T, Zhang T, Ye L, et al. Diversity and quantity of ammonia-oxidizing Archaea and Bacteria in sediment of the Pearl River Estuary, China. Appl Microbiol Biotechnol. 2011;90(3):1137–1145.
   PubMed Web of Science ®Google Scholar
• Chain P, Lamerdin J, Larimer F, et al. Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. J Bacteriol. 2003;185(9):2759–2773.
   PubMed Web of Science ®Google Scholar
• Junier P, Molina V, Dorador C, et al. Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Appl Microbiol Biotechnol. 2010;85(3):425–440.
   PubMed Web of Science ®Google Scholar
• Ren JL, Jin HL, Ye M, et al. Analysis and evaluation of water quality of Aibihu Lake Wetland Natural Reserve. J Arid Land Resources Environ. 2011;25(5):154–157. Chinese.
   Google Scholar
• Liu Y. Protect wetland and improve eco-environment of Ebinur Wetland Lake. Environ Sci Trend. 2004;4:3–5. Chinese.
   Google Scholar
• Malchair S, Carnol M. AOB community structure and richness under European beech, sessile oak, Norway spruce and Douglas-fir at three temperate forest sites. Plant Soil. 2013;366:521–535.
   Web of Science ®Google Scholar
• Zhao Y, Zhou ZH, Li W, et al. DNA extraction from soil for molecular analysis of microbial community. J Agro-Environ Sci. 2005;24(5):854–860. Chinese.
   Google Scholar
• Nakamura K. Removal of mercury from mercury-contaminated sediments using a combined method of chemical leaching and volatilization of mercury by bacteria. Biodegradation. 1999;10(6):443–447.
   PubMed Web of Science ®Google Scholar
• Bassam BJ, Gresshoff PM. Silver staining DNA in polyacrylamide gels. Nat Protoc. 2007;2(11):2649–2654.
   PubMed Web of Science ®Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, et al. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res. 1997;25(24):4876–4882.
   PubMed Web of Science ®Google Scholar
• Naruya Saitou MN. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4(4):406–425.
   Google Scholar
• Tamura K, Dudley J, Nei M, et al. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 2007;24(8):1596–1599.
   PubMed Web of Science ®Google Scholar
• Chen DW, Wang XG, Hu WG, et al. Correlation analysis between the distribution of ammonia-oxidizing bacteria and soil environment in Ebinur Lake Wetland. Microbiol China. 2012;39(3):334–343. Chinese.
   Google Scholar
• Olsson PA, Hansson MC, Burleigh SH. Effect of P availability on temporal dynamics of carbon allocation and Glomus intraradices high-affinity P transporter gene induction in arbuscular mycorrhiza. Appl Environ Microbiol. 2006;72(6):4115–4120.
   PubMed Web of Science ®Google Scholar
• Malchair S, Carnol M. AOB community structure and richness under European beech, sessile oak, Norway spruce and Douglas-fir at three temperate forest sites. Plant Soil. 2012;366(1–2):521–535.
   Web of Science ®Google Scholar
• Chu H, Fujii T, Morimoto S, et al. Community structure of ammonia-oxidizing bacteria under long-term application of mineral fertilizer and organic manure in a sandy loam soil. Appl Environ Microbiol. 2007;73(2):485–491.
   PubMed Web of Science ®Google Scholar
• Webster G, Embley TM, Prosser JI. Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidizer populations. Appl Environ Microbiol. 2002;68(1):20–30.
   PubMed Web of Science ®Google Scholar
• Coci M, Riechmann D, Bodelier PL, et al. Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment. FEMS Microbiol Ecology. 2005;53(3):359–368.
   PubMed Web of Science ®Google Scholar
• Bernhard AE, Donn T, Glblln AE, et al. Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system. Environ Microbiol. 2005;7(9):1289–1297.
   PubMed Web of Science ®Google Scholar