1,432
Views
5
CrossRef citations to date
0
Altmetric
Article; Bioinformatics

Kinetic parameters estimation of protease production using penalty function method with hybrid genetic algorithm and particle swarm optimization

, , &
Pages 404-410 | Received 17 Oct 2015, Accepted 16 Dec 2015, Published online: 29 Jan 2016

References

  • Hemandez A, Ruiz MR. An EXCEL template for calculation of enzyme kinetic parameters by non-linear regression. Bioinform Appl Note. 1998;14:227–228.
  • Roeva ON, Fidanova SS. Hybrid Bat algorithm for parameter identification of an E. coli cultivation process model. Biotechnol Biotechnol Equip. 2013;27:4323–4326.
  • Holland J. Adaptation in natural and artificial systems. Ann Arbor (MI): The University of Michigan Press; 1975.
  • Angelova M, Pencheva T. Tuning genetic algorithm parameters to improve convergence time. Int J Chem Eng. 2011; Article ID 646917. Available from: http://dx.doi.org/10.1155/2011/646917
  • Karthikeyan P, Baskar S, Alphones A. Improved genetic algorithm using different genetic operator combinations (GOCs) for multicast routing in ad hoc networks. Soft Comput. 2013;17:1563–1572.
  • Ahioglu S, Altinten A, Ertunc S, et al. Fuzzy control with genetic algorithm in a batch bioreactor. Appl Biochem Biotechnol. 2013;171:2201–2219.
  • Sun J, Garibaldi JM, Hodgman C. Parameter estimation using metaheuristics in systems biology: a comprehensive review. IEEE/ACM Trans Comput Boil Bioinform. 2012;9:185–202.
  • Kennedy J, Eberhart RC. Particle swarm optimization. In: IEEE International Conference on Neural Networks. Vol. 4; 1995 Nov 27–Dec 1; Perth. Piscataway (NJ): IEEE Service Center; 1995.
  • Rada-Vilela J, Johnston M, Zhang M. Population statistics for particle swarm optimization: single-evaluation methods in noisy optimization problems. Soft Comput. 2015;19(9):2691–2716.
  • Garlapati VK, Vundavilli PR, Banerjee R. Evaluation of lipase production by genetic algorithm and particle swarm optimization and their comparative study. Appl Biochem Biotechnol. 2010;162:1350–1361.
  • Ghovvati M, Khayati G, Attar H, et al. Comparison across growth kinetic models of alkaline protease production in batch and fed-batch fermentation using hybrid genetic algorithm and particle swarm optimization. Biotechnol Biotechnol Equip. 2015;29(6):1216–1225.
  • Rivera EC, Costa AC, Atala DI, et al. Evaluation of optimization techniques for parameter estimation: application to ethanol fermentation considering the effect of temperature. Process Biochem. 2006;41:1682–1687.
  • Skolpap W, Nuchprayoon S, Scharer JM, et al. Fed-batch optimization of α-amylase and protease-producing Bacillus subtilis using genetic algorithm and particle swarm optimization. Chem Eng Sci. 2008;63:4090–4099.
  • Abdullah A, Deris S, Mohamad MS, et al. A new particle swarm evolutionary optimization for parameter estimation of biological models. Int J Comput Inform Syst Ind Manag Appl. 2013;5:571–580.
  • Benjamin KK, Emmanuel AN, David A, et al. Genetic algorithms using for a batch fermentation process identification. Appl Sci. 2008;8:2272–2278.
  • Dutta JR, Dutta PK, Banerjee R. Modeling and optimization of protease production by a newly isolated Pseudomonas sp. using a genetic algorithm. Process Biochem. 2005;40:879–884.
  • Calcada D. Modeling of the physiology of D. hansenii using population-based search methods for parameter estimation [dissertation]. Lisbon: Technical University of Lisbon; 2009.
  • Nootyaskool S. The hybrid implementation genetic algorithm with particle swarm optimization to solve the unconstrained optimization problems. In: 4th International Conference on Knowledge and Smart Technology (KST); 2012 Jul 7–8; Chonburi. IEEE; 2012. doi:10.1109/KST.2012.6287739
  • Kang LV, Yuanyuan MA. Modified PSO algorithm used in the solution of problems with constraints and its application. Int J Multimedia Ubiquitous Eng. 2014;9:97–108.
  • Bergsma WP, Rapcsak T. An exact penalty method for smooth equality constrained optimization with application to maximum likelihood estimation. Eindhoven: Eurandom; 2005.
  • Anvari M, Khayati G. Production and characterization of alkaline protease from Bacillus licheniformis sp. isolated from Iranian northern soils with ram horn hydrolysate. Trends Appl Sci Res. 2011;6:1206–1213.
  • Anvari M, Khayati G. In situ recovery of 2,3-butanediol from fermentation by liquid–liquid extraction. J Ind Microbiol Biotechnol. 2009;36:313–317.
  • Miller GL. Use of dinitrosalycilic acid reagent for determination of reducing sugars. Anal Chem. 1959;31:426–430.
  • Meyers SP, Ahearn DG. Extracellular proteolysis by Candida lipolytica. Mycologia. 1977;69:646–651.
  • Pazouki M, Najafpour G, Hosseini MR. Kinetic models of cell growth, substrate utilization and bio-decolorization of distillery wastewater by Aspergillus fumigatus UB260. Afr J Biotechnol. 2008;7:1369–1376.