7,840
Views
80
CrossRef citations to date
0
Altmetric
Articles; Agriculture and Environmental Biotechnology

Applicability of start codon targeted (SCoT) and inter-simple sequence repeat (ISSR) markers for genetic diversity analysis in durum wheat genotypes

, ORCID Icon, , , , & show all
Pages 1075-1081 | Received 29 Jan 2016, Accepted 22 Aug 2016, Published online: 14 Sep 2016

References

  • Poursiahbidi M , Pour-Aboughadareh A , Tahmasebi G , et al. Evaluation of genetic diversity and interrelationships of agro-morphological characters in durum wheat (Triticum durum desf.) lines using multivariate analysis. IJARR. 2013;3:184–194.
  • Tian Y , Xing C , Cao Y , et al. Evaluation of genetic diversity on Prunus mira Koehne by using ISSR and RAPD markers. Biotechnol Biotechnol Equip. 2015;29:1053–1061.
  • Bornet B , Branchard M . Nonanchored. inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Mol Biol Rep. 2001;19:209–215.
  • Moradkhani H , Pour-Aboughadareh AR , Mehrabi AA , et al. Evaluation of genetic relationships of Triticum-Aegilops species possessing D genome in different ploidy levels using microsatellites. Int J Agri Crop Sci. 2012;23:1746–1751.
  • Collard BC , Mackill DJ . Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants. Plan Mol Biol Rep. 2009;27:86–93.
  • Amirmoradi B , Talebi R , Karami E .Comparison of genetic variation and differentiation among annual Cicer species using start codon targeted (SCoT) polymorphism, DAMD-PCR, and ISSR markers. Plant Syst Evol. 2012;298:1679–1688.
  • Guo DL , Zhang JY , Liu CH . Genetic diversity in some grape varieties revealed by SCoT analyses. Mol Biol Rep. 2012;39:5307–5313.
  • Hamidi H , Talebi R , Keshavarzi F . Comparative efficiency of functional gene-based markers, start codon targeted polymorphism (SCoT) and conserved DNA-derived polymorphism (CDDP) with ISSR markers for diagnostic fingerprinting in wheat (Triticum aestivum L.). Cereal Res Commun. 2014;42(4):558–567.
  • Que YX , Pan YB , Lu YH , et al. Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism. Bio Med Res Int. 2014;2014:1–10.
  • El-Assal S , Gaber, A . Discrimination capacity of RAPD, ISSR AND SSR markers and their effectiveness in establishing genetic relationship and diversity among Egyptian and Saudi wheat cultivars. Am J Appl Sci. 2012;9:724–735.
  • Doyle JJ , Doyle JL . A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 1987;19:11–15.
  • Anderson JA , Churchill GA , Autrique JE , et al. Optimizing parental selection for genetic linkage maps. Genome. 1993;36:181–186.
  • Varshney RK , Chabane K , Hendre PS , et al. Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Sci. 2007;173:638–649.
  • Prevost A , Wilkinson MJ . A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor Appl Genetic. 1999;98:107–112.
  • Peakall R , Smouse PE . GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol. 2006;6:288–295.
  • Yeh FC , Yang RC , Boyle T . Microsoft Window-based freeware for population genetic analysis (POPGENE). Version 1.31. 1999. Available from: http://ftp.microsoft.com/softlib/MSLFILES/HPGL.EXE.
  • Rholf F . Numerical taxonomy and multivariate analysis system: version 2.10. Setauket ( NY ): Exeter Software; 2007.
  • Abdel Kalil K , Abd El-Twan M , Galal R . Genetic diversity and relationships among Egyptian Galium (Rubiaceae) and related species using ISSR and RAPD markers. Biologia. 2014;69:300–310.
  • Cao PJ , Yao QF , Ding BY , et al. Genetic diversity of Sinojackia dolichocarpa (Styracaceae), a species endangered and endemic to China, detected by inter-simple sequence repeat (ISSR). Biochem Syst Ecol. 2006;34:231–239.
  • Galvan MZ , Bornet B , Balatti PA , et al. Inter simple sequence repeat (ISSR) marker as a tool for the assessment of both genetic diversity and gene pool origin in common bean (Phaseolus vulgaris L.). Euphytica. 2003;132:297–301.
  • Sofalian O , Chaparzadeh N , Dolati M . Genetic diversity in spring wheat landraces from northwest of Iran assessed by ISSR markers. Not Bot Horti Agrobot Cluj Napoca. 2009;37:252–256.
  • Mardi M , Naghavi MR , Pirseyedi SM , et al. Comparative assessment of SSAP, AFLP and SSR markers for evaluation of genetic diversity of durum wheat (Triticum turgidum L. var. durum). J Agr Sci Tech. 2011;13:905–920.
  • Zamanianfard Z , Alireza Etminan A , Mohammadi R , et al. Evaluation of molecular diversity of durum wheat genotypes using ISSR markers. Biol Forum. 2015;7:214–218.
  • Gomes S , Martins-Lopes P , Lopes J , et al. Assessing genetic diversity in Oleaeuropaea L. using ISSR and SSR markers. Plant Mol Biol Rep. 2009;27:365–373.
  • Grativol C , da Fonseca C , Medeiros L , et al. High efficiency and reliability of inter-simple sequence repeats (ISSR) markers for evaluation of genetic diversity in Brazilian cultivated Jatropha curcas L. accessions. Mol Biol Rep 2011;38:4245–4256.
  • Patra B , Acharya L , Mukherjee AK , et al. Molecular characterization of ten cultivars of Canna lilies (Cannalinn.) using PCR based molecular markers (RAPDs and ISSRs). Int J Integr Biol. 2008;2:129–137.
  • Tatikonda L , Wani SP , Kannan S , et al. AFLP-based molecular characterization of an elite germplasm collection of Jatrophacurcas L. a biofuel plant. Plant Sci. 2009;176:505–513.
  • Khodadadi M , Fotokian MH , Miransari M . Genetic diversity of wheat (Triticum aestivum L.) genotypes based on cluster and principal component analyses for breeding strategies. Aust J Crop Sci. 2011;5:17–24.