Detection of KRAS mutations of colorectal cancer with peptide-nucleic-acid-mediated real-time PCR clamping

References

• Jemal A , Bray F , Center MM , et al. Global cancer statistics. CA Cancer J Clin. 2011;61(2):69–90.
   PubMed Web of Science ®Google Scholar
• Tan C , Du X . KRAS mutation testing in metastatic colorectal cancer. World J Gastroenterol. 2012;18(37):5171–5180.
   PubMed Web of Science ®Google Scholar
• Siena S , Sartore-Bianchi A , Di Nicolantonio F , et al. Biomarkers predicting clinical outcome of epidermal growth factor receptor-targeted therapy in metastatic colorectal cancer. J Natl Cancer Inst. 2009;101(19):1308–1324.
   PubMedGoogle Scholar
• Massarelli E , Varella-Garcia M , Tang X , et al. KRAS mutation is an important predictor of resistance to therapy with epidermal growth factor receptor tyrosine kinase inhibitors in non-small-cell lung cancer. Clin Cancer Res. 2007;13(10):2890–2896.
   PubMed Web of Science ®Google Scholar
• Hoshi K , Takakura H , Mitani Y , et al. Rapid detection of epidermal growth factor receptor mutations in lung cancer by the SMart-Amplification process. Clin Cancer Res. 2007;13(17):4974–4983.
   PubMed Web of Science ®Google Scholar
• Miyano S , Hanazawa K , Kitabatake T , et al. Detecting KRAS mutations in peripheral blood of colorectal cancer patients by peptide nucleic acid clamp PCR. Exp Ther Med. 2012;4(5):790–794.
   PubMed Web of Science ®Google Scholar
• Krypuy M , Newnham GM , Thomas DM , et al. High resolution melting analysis for the rapid and sensitive detection of mutations in clinical samples: KRAS codon 12 and 13 mutations in non-small cell lung cancer. BMC Cancer. 2006;6:295.
   PubMed Web of Science ®Google Scholar
• Guha M , Castellanos-Rizaldos E , Liu PF , et al. Differential strand separation at critical temperature: a minimally disruptive enrichment method for low-abundance unknown DNA mutations. Nucleic Acids Res. 2013;41(3):e50.
   PubMed Web of Science ®Google Scholar
• Zhao X , Li Y , Park M , et al. Loop-mediated isothermal amplification assay targeting the femA gene for rapid detection of Staphylococcus aureus from clinical and food samples. J Microbiol Biotechnol. 2013;23(2):246–250.
   PubMed Web of Science ®Google Scholar
• Zhao X , Yu CS , Tsai WH , et al. Improvement of the sensitivity of the surface plasmon resonance sensors based on multi-layer modulation techniques. Opt Commun. 2015;335:32–36.
   Web of Science ®Google Scholar
• Zhao X , Tsao Y , Lee F , et al. Optical fiber sensor based on surface plasmon resonance for rapid detection of avian influenza virus subtype H6: initial studies. J Virol Methods. 2016;233:15–22.
   PubMed Web of Science ®Google Scholar
• Milbury CA , Li J , Makrigiorgos GM . PCR-based methods for the enrichment of minority alleles and mutations. Clin Chem. 2009;55(4):632–640.
   PubMed Web of Science ®Google Scholar
• Zhao X , Lin CW , Wang J , et al. Advances in rapid detection methods for foodborne pathogens. J Microbiol Biotechnol. 2014;24(3):297–312.
   PubMed Web of Science ®Google Scholar
• Zhao X , Wei C , Zhong J , et al. Research advance in rapid detection of foodborne Staphylococcus aureus . Biotechnol Biotec EQ. 2016; DOI: 10.1080/13102818.2016.1209433.
   Web of Science ®Google Scholar
• Demers DB , Curry ET , Egholm M , et al. Enhanced PCR amplification of VNTR locus D1S80 using peptide nucleic-acid (PNA). Nucleic Acids Res. 1995;23(15):3050–3055.
   PubMed Web of Science ®Google Scholar
• Kyger EM , Krevolin MD , Powell MJ . Detection of the hereditary hemochromatosis gene mutation by real-time fluorescence polymerase chain reaction and peptide nucleic acid clamping. Anal Biochem. 1998;260(2):142–148.
   PubMed Web of Science ®Google Scholar
• Tatsumi K , Mitani Y , Watanabe J , et al. Rapid screening assay for KRAS mutations by the modified smart amplification process. J Mol Diagn. 2008;10(6):520–526.
   PubMed Web of Science ®Google Scholar
• Choi JJ , Cho M , Oh M , et al. PNA-mediated real-time PCR clamping for detection of EGFR mutations. B Korean Chem Soc. 2010;31(12):3525–3529.
   Web of Science ®Google Scholar
• Dabritz J , Hanfler J , Preston R , et al. Detection of Ki- ras mutations in tissue and plasma samples of patients with pancreatic cancer using PNA-mediated PCR clamping and hybridisation probes. Br J Cancer. 2005;92(2):405–412.
   PubMed Web of Science ®Google Scholar
• Jeong D , Jeong Y , Park JH , et al. BRAFV600E mutation analysis in papillary thyroid carcinomas by peptide nucleic acid clamp real-time PCR. Ann Surg Oncol. 2013;20(3):759–766.
   PubMed Web of Science ®Google Scholar
• Beau-Faller M , Legrain M , Voegeli AC , et al. Detection of K- Ras mutations in tumour samples of patients with non-small cell lung cancer using PNA-mediated PCR clamping. Br J Cancer. 2009;100(6):985–992.
   PubMed Web of Science ®Google Scholar
• Domagala P , Hybiak J , Sulzyc-Bielicka V , et al. KRAS mutation testing in colorectal cancer as an example of the pathologist's role in personalized targeted therapy: a practical approach. Pol J Pathol. 2012;63(3):145–164.
   PubMed Web of Science ®Google Scholar
• Pao W , Laclanyi M . Epidermal growth factor receptor mutation testing in lung cancer: searching for the ideal method. Clin Cancer Res. 2007;13(17):4954–4955.
   PubMed Web of Science ®Google Scholar
• Eberhard DA , Giaccone G , Johnson BE . Biomarkers of response to epidermal growth factor receptor inhibitors in non-small-cell lung cancer working group: standardization for use in the clinical trial setting. J Clin Oncol. 2008;26(6):983–994.
   PubMed Web of Science ®Google Scholar
• Do H , Krypuy M , Mitchell PL , et al. High resolution melting analysis for rapid and sensitive EGFR and KRAS mutation detection in formalin fixed paraffin embedded biopsies. Bmc Cancer. 2008;8:142.
   PubMed Web of Science ®Google Scholar
• Nitsche A . Oligonucleotide design for in-house real-time PCR applications in microbiology. In: Mackay IM , editor. Real-time PCR in microbiology. Norfolk (VA): Caister Academic Press; 2007. p. 41–69.
   Google Scholar
• Takata M , Chikumi H , Matsunami K , et al. A new rapid method for detecting epidermal growth factor receptor mutations in non-small cell lung cancer. Oncol Rep. 2015;33(3):1040–1048.
   PubMed Web of Science ®Google Scholar
• Sharma A , Zhang G , Aslam S , et al. Novel approach for clinical validation of the cobas KRAS mutation test in advanced colorectal cancer. Mol Diagn Ther. 2016; 20(3):231–240.
   PubMed Web of Science ®Google Scholar
• Dudley J , Tseng LH , Rooper L , et al. Challenges posed to pathologists in the detection of KRAS mutations in colorectal cancers. Arch Pathol Lab Med. 2015;139(2):211–218.
   PubMed Web of Science ®Google Scholar
• Qu S , Liu L , Gan S , et al. Detection of low-level DNA mutation by ARMS-blocker-Tm PCR. Clin Biochem. 2015;49(3):287–291.
   PubMed Web of Science ®Google Scholar