Phylogenetic analysis of the bacterial community in a crystallizer pond, Pomorie salterns, Bulgaria

References

• Lizama C, Monteoliva-Sanchez M, Prado B, et al. Taxonomic study of extreme halophilic archaea isolated from the “Salar de Atacama”, Chile. Syst Appl Microbiol. 2001;24:464–474.
   PubMed Web of Science ®Google Scholar
• Jiang H, Dong H, Yu B, et al. Microbial response to salinity change in Lake Chaka, a hypersaline lake on Tibetan plateau. Environ Microbiol. 2007;9:2603–2621.
   PubMed Web of Science ®Google Scholar
• Hugenholtz P, Goebel BM, Pace NR. Impact of culture independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol. 1998;180:4765–4774.
   PubMed Web of Science ®Google Scholar
• Manikandan M, Kannan V, Pašic L. Diversity of microorganisms in solar salterns of Tamil Nadu, India. World J Microbiol Biotechnol. 2009;25:1007–1017.
   Web of Science ®Google Scholar
• Prosser J, Jansson JK, Liu W. Nucleic-acid-based characterization of community structure and function. In: Liu W-T, Jansson JK, editors. Environmental molecular microbiology. Poole: Caister Academic Press; 2010. p. 63–86.
   Google Scholar
• Ovreas L, Daae FL, Torsvik V, et al. Characterization of microbial diversity in hypersaline environments by melting profiles and reassociation kinetics in combination with terminal restriction fragment length polymorphism (T-RFLP). Microb Ecol. 2003;46:291–301.
   PubMed Web of Science ®Google Scholar
• Oren A. Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. J Ind Microbiol Biotechnol. 2002;28:56–63.
   PubMed Web of Science ®Google Scholar
• Antón J, Rossello MR, Rodríguez-Valera F, et al. Extremely halophilic bacteria in crystallizer ponds from solar salterns. Appl Environ Microbiol. 2000;66:3052–3057.
   PubMed Web of Science ®Google Scholar
• Trigui H, Masmoudi S, Brochier-Armanet C, et al. Characterization of heterotrophic prokaryote subgroups in the Sfax coastal solar salterns by combining flow cytometry cell sorting and phylogenetic analysis. Extremophiles. 2011;15:347–358.
   PubMed Web of Science ®Google Scholar
• Kambourova M, Tomova I, Boyadzhieva I, et al. Unusually high archaeal diversity in a crystallizer pond, Pomorie salterns, Bulgaria, revealed by phylogenetic analysis. Archaea [Internet]. 2016 [cited 2016 Nov 23]; 2016:7459679. Available from: https://www.hindawi.com/journals/archaea/2016/7459679/
   PubMed Web of Science ®Google Scholar
• Weisburg WG, Barns SM, Pelletier DA, et al. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol. 1991;173:697–703.
   PubMed Web of Science ®Google Scholar
• Altschul SF, Gish W, Miller W, et al. Basic local alignment search tool. J Mol Biol. 1990;215:3389–3402.
   Web of Science ®Google Scholar
• Maidak BL, Larsen N, McCaughey MJ, et al. The ribosomal database project. Nucleic Acids Res. 1994;22:3485–3487.
   PubMed Web of Science ®Google Scholar
• Tamura K, Stecher G, Peterson D, et al. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013;30:2725–2729.
   PubMed Web of Science ®Google Scholar
• Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–425.
   PubMed Web of Science ®Google Scholar
• Ravenschlag K, Sahm K, Pernthaler J, et al. High bacterial diversity in permanently cold marine sediments. Appl Environ Microbiol. 1999;65:3982–3989.
   PubMed Web of Science ®Google Scholar
• Hill TCJ, Walsh KA, Harris JA, et al. Using ecological diversity measures with bacterial communities. FEMS Microbiol Ecol. 2003;43:1–11.
   PubMed Web of Science ®Google Scholar
• Oren A. Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Syst [Internet]. 2008 [cited 2016 Oct 18]; 4:2. Available from: https://aquaticbiosystems.biomedcentral.com/articles/10.1186/1746-1448-4-2.
   PubMedGoogle Scholar
• Benlloch S, López-López A, Casamayor EO, et al. Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ Microbiol. 2002;4:349–360.
   PubMed Web of Science ®Google Scholar
• Burns DG, Camakaris HM, Janssen PH, et al. Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable. Appl Environ Microbiol. 2004;70:5258–5265.
   PubMed Web of Science ®Google Scholar
• Maturrano L, Santos F, Rosselló-Mora R, et al. Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes. Appl Environ Microbiol. 2006;72:3887–3895.
   PubMed Web of Science ®Google Scholar
• Dillon JG, Carlin M, Gutierrez A, et al. Patterns of microbial diversity along a salinity gradient in the Guerrero Negro solar saltern, Baja CA Sur, Mexico. Frontiers Microbiol [Internet]. 2013 [cited 2016 Oct 18];4:399. Available from: http://journal.frontiersin.org/article/10.3389/fmicb.2013.00399/full
   PubMed Web of Science ®Google Scholar
• Baati H, Guermazi S, Amdouni R, et al. Prokaryotic diversity of a Tunisian multipond solar saltern. Extremophiles. 2008;12:505–518.
   PubMed Web of Science ®Google Scholar
• Boutaiba S, Hacene H, Bidle KA, et al. Microbial diversity of the hypersaline Sidi Ameur and Himalatt salt lakes of the Algerian Sahara. J Arid Environ. 2011;75:909–916.
   PubMed Web of Science ®Google Scholar
• Demergasso C, Casamayor EO, Chong G, et al. Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northen Chile. FEMS Microbiol Ecol. 2004;48:57–69.
   PubMed Web of Science ®Google Scholar
• Emmerich M, Bhansali A, Lösekann-Behrens T, et al. Abundance, distribution, and activity of Fe (II)-oxidizing and Fe (III)-reducing microorganisms in hypersaline sediments of Lake Kasin, southern Russia. Appl Environ Microbiol. 2012;78:4386–4399.
   PubMed Web of Science ®Google Scholar
• Choi DH, Cho BC. Citreimonas salinaria gen. nov., sp. nov., a member of the Roseobacter clade isolated from a solar saltern. Int J Syst Evol Microbiol. 2006;56:2799–2803.
   PubMed Web of Science ®Google Scholar
• Labrenz M, Collins MD, Lawson PA, et al. Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol. 1999;49:137–147.
   PubMedGoogle Scholar
• León MJ, Fernández AB, Ghai R, et al. From metagenomics to pure culture: isolation and characterization of the moderately halophilic bacterium Spiribacter salinus gen. nov., sp. nov. Appl Environ Microbiol. 2014;80:3850–3857.
   PubMed Web of Science ®Google Scholar
• Ollivier B, Hatchikian CE, Prensier G, et al. Desulfohalobium retbaense gen. nov., sp. nov., a halophilic sulfate-reducing bacterium from sediments of a hypersaline lake in Senegal. Int J Syst Bacteriol. 1991;41:74–81.
   Google Scholar
• Jakobsen TF, Kjeldsen KU, Ingvorsen K. Desulfohalobium utahense sp. nov., a moderately halophilic, sulfate-reducing bacterium isolated from Great Salt Lake. Int J Syst Evol Microbiol. 2006;56:2063–2069.
   PubMed Web of Science ®Google Scholar
• Zhaxybayeva O, Stepanauskas R, Mohan NR, et al. Cell sorting analysis of geographically separated hypersaline environments. Extremophiles. 2013;17:265–275.
   PubMed Web of Science ®Google Scholar
• Baati H, Guermazi S, Gharsallah N, et al. Novel prokaryotic diversity in sediments of Tunisian multipond solar saltern. Res Microbiol. 2010;161:573–582.
   PubMed Web of Science ®Google Scholar
• Makhdoumi-Kakhki A, Amoozegar MA, Kazemi B, et al. Prokaryotic diversity in Aran-Bidgol salt lake, the largest hypersaline playa in Iran. Microbes Environ. 2012;27:87–93.
   PubMed Web of Science ®Google Scholar
• Gomariz M, Martínez-García M, Santos F, et al. From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists. Int J Syst Evol Microbiol. 2015;9:16–31.
   Google Scholar
• Pagaling E, Wang H, Venables M, et al. Microbial biogeography of six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. Appl Environ Microbiol. 2009;75:5750–5760.
   PubMed Web of Science ®Google Scholar
• Ludwig W, Strunk O, Klugbauer S, et al. Bacterial phylogeny based on comparative sequence analysis. Electrophoresis. 1998;19:554–568.
   PubMed Web of Science ®Google Scholar
• Hugenholtz P, Pitulle C, Hershberger KL, et al. Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol. 1998;180:366–376.
   PubMed Web of Science ®Google Scholar
• Youssef N, Steidley BL, Elshahed MS. Novel high-rank phylogenetic lineages within a sulfur spring (Zodletone spring, Oklahoma, USA) revealed using a combined pyrosequencing/Sanger approach. Appl Environ Microbiol. 2012;78:2677–2688.
   PubMed Web of Science ®Google Scholar
• Harris JK, Kelley ST, Pace NR. New perspective on uncultured bacterial phylogenetic division OP11. Appl Environ Microbiol. 2004;70:845–849.
   PubMed Web of Science ®Google Scholar