1,393
Views
5
CrossRef citations to date
0
Altmetric
Article; Biotechnological Equipment

Iron affinity gel and gallium immobilized metal affinity chromatographic technique for phosphopeptide enrichment: a comparative study

, &
Pages 639-646 | Received 03 Aug 2016, Accepted 07 Feb 2017, Published online: 28 Feb 2017

References

  • Reinders J, Sickmann A. State-of-the-art in phosphoproteomics. Proteomics. 2005;5:4052–4061.
  • Hubbard MJ, Cohen P. On target with a new mechanism for the regulation of protein phosphorylation. Trends Biochem Sci. 1993;18:172–177.
  • Lu KP, Zhou XZ. The prolyl isomerase PIN1: a pivotal new twist in phosphorylation signalling and disease. Nat Rev Mol Cell Biol. 2007;8:904–916.
  • Kumar S, Walter J. Phosphorylation of amyloid beta (Aβ) peptides – a trigger for formation of toxic aggregates in Alzheimer's disease. Aging (Albany NY). 2011;3:803–812.
  • Ficarro SB, McCleland ML, Stukenberg PT et al., Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat Biotechnol. 2002;20:301–305.
  • Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature. 2003;422:198–207.
  • Boyle WJ, Van Der Geer P, Hunter T. In protein phosphorylation. Methods in enzymology 201. San Diego (NY): Academic Press; 1991. p. 110–149.
  • Muszyńska G, Dobrowolska G, Medin A et al., Model studies on iron(III) ion affinity chromatography. II. Interaction of immobilized iron(III) ions with phosphorylated amino acids, peptides and proteins. J Chromatogr. 1992;604:19–28.
  • Watts JD, Affolter M, Krebs DL et al., Identification by electrospray ionization mass spectrometry of the sites of tyrosine phosphorylation induced in activated Jurkat T cells on the protein tyrosine kinase ZAP-70. J Biol Chem. 1994;269:29520–29529.
  • Porath J, Carlsson J, Olsson I et al., Metal chelate affinity chromatography, a new approach to protein fractionation. Nature. 1975;258:598–599.
  • Andersson L, Porath J. Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography. Anal Biochem. 1986;154:250–254.
  • von Stechow L, Francavilla C, Olsen JV. Recent findings and technological advances in phosphoproteomics for cells and tissues. Expert Rev Proteomics. 2015;12:469–487.
  • Hearon J. The configuration of oxy-bis(cobaltodihistidine). J Natl Cancer Inst. 1948;9:1–11.
  • Jon WW, Robert L, Albright  & Nien-Hwa LW. Immobilized metal ion affinity chromatography (IMAC) chemistry and bioseparation applications. Separ purif method. 2006;49–106.
  • Nuhse TS, Stensballe A, Jensen O et al., Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell. 2004;16:2394–2405.
  • Annan RS, Huddleston MJ, Verma R et al., A multidimensional electrospray MS-based approach to phosphopeptide mapping. Anal Chem. 2001;73:393–404.
  • Fíla J, Honys D. Enrichment techniques employed in phosphoproteomics. Amino Acids. 2012;43:1025–1047.
  • Pandey A, Podtelejnikov AV, Blagoev B et al., Analysis of receptor signaling pathways by mass spectrometry: identification of Vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors. Proc Natl Acad Sci USA. 2000;97:179–184.
  • Matsumoto M, Oyamada K, Takahashi H et al., Large-scale proteomic analysis of tyrosine-phosphorylation induced by T-cell receptor or B-cell receptor activation reveals new signaling pathways. Proteomics. 2009;9:3549–3563.
  • McLachlin DT, Chait BT. Analysis of phosphorylated proteins and peptides by mass spectrometry. Curr Opin Chem Biol. 2001;5:591–602.
  • Larsen MR, Sorensen GL, Fey SJ et al., Phospho-proteomics: evaluation of the use of enzymatic de-phosphorylation and differential mass spectrometric peptide mass mapping for site specific phosphorylation assignment in proteins separated by gel electrophoresis. Proteomics. 2001;1:223–238.
  • Zhou W, Merrick BA, Khaledi MG et al., Detection and sequencing of phosphopeptides affinity bound to immobilized metal ion beads by matrix-assisted laser desorption/ionization mass spectrometry. J Am Soc Mass Spectrom. 2000;4:273–282.
  • Lai AC, Tsai CF, Hsu CC et al., Complementary Fe(3+)- and Ti(4+)-immobilized metal ion affinity chromatography for purification of acidic and basic phosphopeptides. Rapid Commun Mass Spectrom. 2012;26:2186–2194.
  • Morandell S, Stasyk T, Grosstessner-Hain K et al., Phosphoproteomics strategies for the functional analysis of signal transduction. Proteomics. 2006;6:4047–4056.
  • Emiko KK, Atsushi Y, Chika I et al., A novel phosphate-affinity bead with immobilized Phos-tag for separation and enrichment of phosphopeptides and phosphoproteins. JIOMICS; 2011. p. 157–169.
  • Nühse TS, Stensballe A, Jensen ON et al., Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Mol Cell Proteomics. 2003;2:1234–1243.
  • Thomas S, Allan S, Ole N et al., Large-scale analysis of in-vivo phosphorylated membrane proteins by immobilized metal Ion affinity chromatography and mass spectrometry. Mol Cell Proteomics. 2003;2:1234–1243.
  • Wissing J, Jansch L, Nimtz M et al., Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. Mol Cell Proteomics. 2007;6:537–547.
  • Wiese S, Reidegeld KA, Meyer HE et al., Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research. Proteomics. 2007;7:340–350.
  • Zhou H, Yan H, Yan W et al., Quantitative proteomics analysis with iTRAQ in human lenses with nuclear cataracts of different axial lengths. Mol Vis. 2016;22:933–343.
  • Kinoshita-Kikuta E, Kinoshita E, Yamada A et al., Enrichment of phosphorylated proteins from cell lysate using a novel phosphate-affinity chromatography at physiological pH. Proteomics. 2006;6:5088–5095.
  • Grønborg M, Kristiansen TZ, Stensballe A et al., A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate. Mol Cell Proteomics. 2002;1:517–527.
  • Novotna L, Hruby M, Benes MJ et al., Study of pepsin phosphorylation using immobilized metal affinity chromatography. J Sep Sci. 2008;31:1662–1668.