Relationship between soil composition, diversity and antifungal properties of Bacillus spp. isolated from southeastern Anatolia

References

• Zohary M. A monographical study of the genus Pistacia. Palest J Bot Jerusalem Ser. 1952;5:187–228.
   Google Scholar
• Atli HS, Aydin Y, Arpaci S. Determination of growth, bearing, yield and some quality characteristics of pistachio cultivars grafted on different rootstocks under irrigated conditions. Int Soc Horticult Sci. 2011;912:289–294.
   Google Scholar
• FAOSTAT, 2017. Crop Production. Food and Agriculture Organization of the United Nations (FAO). Available online: http://faostat.fao.org
   Google Scholar
• Crous PW, Quaedvlieg W, Sarpkaya K. Septoria-like pathogens causing leaf and fruit spot of pistachio. IMA Fungus. 2013;4:187–199.
   PubMed Web of Science ®Google Scholar
• Ozkilinc H, Sarpkaya K, Kurt S, et al. Pathogenicity, morpho-species and mating types of Alternaria spp. causing Alternaria blight in Pistacia spp. inTurkey. Phytoparasitica. 2017;45:719–728.
   Web of Science ®Google Scholar
• Pryor BM, Michailides TJ. Morphological, pathogenic, and molecular characterization of alternaria isolates associated with alternaria late blight of pistachio. Phytopathology. 2002;92:406–416.
   PubMed Web of Science ®Google Scholar
• Farzaneh M, Zhi-QiShi ZQ, Ghassempour A, et al. Aflatoxin B1 degradation by Bacillus subtilis UTBSP1 isolated from pistachio nuts of Iran. Food Contr. 2012;23:100–106.
   Web of Science ®Google Scholar
• Varga E, Glauner T, Berthiller F, et al. Development andvalidation of a (semi-) quantitative UHPLC-MS/MS method for the determination of 191 mycotoxins and other fungal metabolites in almonds, hazelnuts, peanuts and pistachios. Anal Bioanal Chem. 2013;405:5087–5104.
   PubMed Web of Science ®Google Scholar
• Ceyhan DI, Can C, Sarpkaya K, et al. Soil structure of pistachio cultivation areas in Turkey and comparison with borderlines. Indian J Agric Res. 2017;51:360–364.
   Google Scholar
• Rooney AP, Price NPJ, Ehrhardt C, et al. Phylogeny and molecular taxonomy of the Bacillus subtilis species complex and description of Bacillus subtilis subsp. inaquosorum subsp. nov. Inter J System Evol Microbiol. 2009;59:2429–2436.
   PubMed Web of Science ®Google Scholar
• Jin F, Ding Y, Ding W, et al. Genetic diversity and phylogeny of antagonistic bacteria against Phytophthora nicotianae ısolated from tobacco rhizosphere. IJMS. 2011;12:3055–3071.
   Web of Science ®Google Scholar
• Bottone EJ, Peluso RW. Production by Bacillus pumilus (MSH) of an antifungal compound that is active against Mucoraceae and Aspergillus species: preliminary report. J Medical Microbiol. 2003;52:69–74.
   PubMed Web of Science ®Google Scholar
• Kloepper JW, Ryu C-M, Zhang S. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology. 2004;4:1259–1266.
   Web of Science ®Google Scholar
• Arroyave-Toro JJ, Mosquera S, Villegas-Escobar V. Biocontrolactivity of Bacillussubtilis EA-CB0015 cells and lipopeptides against postharvest fungal pathogens. Biol Contr. 2017;114:195–200.
   Web of Science ®Google Scholar
• Afsharmanesh H, Ahmadzadeh M, Majdabadi A, et al. Enhancement of biosurfactants and biofilm production after gamma irradiation-induced mutagenesis of Bacillus subtilis UTB1, a biocontrolagent of Aspergillus flavus. Arch Phytopathol Plant Protect. 2013;46:1874–1884.
   Google Scholar
• Siahmoshteh F, Siciliano I, Houda Banani H, et al. Efficacy of Bacillus subtilis and Bacillus amyloliquefaciens in the control of Aspergillus parasiticus growth and aflatoxins production on pistachio. Inter J Food Microbiol. 2017;254:47–53.
   PubMed Web of Science ®Google Scholar
• Mikanová O, Šimon T, Kopecký J, et al. Soil biological characteristics and microbial community structure in a fieldexperiment. Open Life Sci. 2015;10:249–259.
   Web of Science ®Google Scholar
• Wang R, Zhang H, Sun L, et al. Microbial community composition is related to soil biological and chemical properties and bacterial wilt outbreak. Sci Reports. 2017;7:343. DOI:10.1038/s41598-017-00472-6.
   PubMed Web of Science ®Google Scholar
• Souza A, Cruz JC, Sousa NR, et al. Endophytic bacteria from banana cultivars and their antifungal activity. Genet Mol Res. 2014;13:8661–8670.
   PubMed Web of Science ®Google Scholar
• Ahmad Z, Wu J, Chen L, et al. Isolated Bacillus subtilis strain 330-2 and its antagonistic genes identified by theremoving PCR. Sci Reports. 2017;7:1777.
   PubMed Web of Science ®Google Scholar
• Jackson ML. Soil chemical analysis. Upper Saddle River, NJ: Prentice Hall Inc. Press; 1962.
   Google Scholar
• Kim HS, Lee DW, Woo SD, et al. Distribution, serological identification, and PCR analysis of Bacillus thuringiensis isolated from soils of Korea. Curr Microbiol. 1998;37:195–200.
   PubMed Web of Science ®Google Scholar
• Konukoğlu F, Kusek M, Sarpkaya K. editors. Discoloration of pistachio nuts grown in the Gaziantep province of Turkey. V International Symposium on Pistachios and Almonds; 2009 Oct 06-10; Şanlıurfa, Turkey.
   Google Scholar
• Christy JE, Tharmila S, Niranjan K. Antagonistic activity of Trichoderma spp. and Bacillus spp. against Pythium aphanidermatum isolated from tomato damping off. Arch Appl Sci Res. 2012;4:1623–1627.
   Google Scholar
• Gogusgeren N. Determination strains of Bacillus spp. which produces an effective antibiotic against Trichoderma spp. and investigation of the opportunity to be in situ of these strains at micelle culture of Ganodermalucidum [master’s thesis]. Adana (A): Çukurova University; 2009.
   Google Scholar
• Bal EBB, Bal MA. Effects of chemicaladditivesandensiling time on whole plant wheat silage microbial profiles inferred by phenotypic and 16S ribosomal DNA analyses. World J Microbiol Biotechnol. 2012;28:767–776.
   PubMed Web of Science ®Google Scholar
• Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–425.
   PubMed Web of Science ®Google Scholar
• Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39:783–791.
   PubMed Web of Science ®Google Scholar
• Nei M, Kumar S. Molecular evolution and phylogenetics. New York: Oxford University Press; 2000.
   Google Scholar
• Kumar S, Stecher G, Tamura K. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–1874.
   PubMed Web of Science ®Google Scholar
• Ter Braak CJF, Smilauer P. CANOCO Reference Manual and User’s Guide to CANOCO for Windows: Software for Canonical Community Ordination (version 4). Ithaca, NY: Microcomputer Power Press; 1998.
   Google Scholar
• Juggins S, Ter Braak CJF. CALIBRATE - a program for species-environment calibration by [weighted-averaging] partial least squares regression. London (LDN): University College Press; 1992.
   Google Scholar
• Moradi M, Ershad J, editors. Determination of density of the molds Aspergillus species in the Kerman pistachio orchards in different months of years. Proceeding of the 14th Iranian Plant Protection Congress; 2000 Sept 5–8; Isfahan, Iran. Isfahan University of Technology p:128; 2000.
   Google Scholar
• Ma Z, Michailides TJ. Characterization of iprodione-resistant Alternaria isolates from pistachio in California, Pesticide Biochemistry and Physiology. Phytopathology. 2004;80:75–84.
   Google Scholar
• Sarpkaya K. Studies on biology, epidemiology and control of Pseudocercospora pistacina on pistachio [dissertation]. Adana (A): Çukurova University; 2014.
   Google Scholar
• Cuervo-Parro j, Ramírez- Lepe M, Cortes TR. Biological control of phytopathogenic fungi. Henderson: OMICS International; 2015.
   Google Scholar
• Kildea S, Ransbotyn V, Khan MR, et al. Bacillus megaterium shows potential for the biocontrol of Septoria tritici blotch of wheat. Biol Contr. 2008;47:37–45.
   Web of Science ®Google Scholar
• Zhang T, Shi ZQ, Hu LB, et al. Antifungal compounds from Bacillus subtilis B-FS06 inhibiting the growth of Aspergillus flavus. World J Microbiol Biotechnol. 2008;24:783–788.
   Web of Science ®Google Scholar
• Zuo R, Chang J, Yin Q, et al. Inhibiting Aspergillus flavus growth and degrading a flatoxin B1 by combined beneficial microbes. Afr J Biotechnol. 2012;11:12903–12909.
   Google Scholar
• Kumar R, Singh VP, Sharma A. A study biological control of Aspergillus flavus using Psudomonas fluorescens and Bacillus subtilis. IRJSE. 2014;2:213–218.
   Google Scholar
• Shafi J, Tian H, Ji M. Bacillus species as versatile weapons for plan tpathogens: a review. Biotechnol Biotechnol Equip. 2017;31:446–459.
   Web of Science ®Google Scholar
• Ji SH, Paul NC, Deng JX, et al. Biocontrolactivity of Bacillus amyloliquefaciens CNU114001 against fungal plant disease. Mycobiology 2013;41:234–242.
   PubMed Web of Science ®Google Scholar
• Hosssain MJ, Ran C, Liu K, et al. Deciphering the conserved in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum. Front Plant Sci. 2015;8:631. DOI: 10.3389/fpls.2015.00631
   Google Scholar
• Dzionek A, Wojcieszyńska D, Guzik U. Natural carriers in bioremediation: a review. Electronic J Biotechnol. 2016;23:28–36.
   Web of Science ®Google Scholar
• Costa ACA, Duta FP. Bioaccumulation of copper, zinc, cadmium and lead by Bacillus sp., Bacillus cereus, Bacillus sphaericus and Bacillus subtilis. Braz J Microbiol. 2001;32:1–5.
   Web of Science ®Google Scholar
• Syed S, Chinthala P. Heavy metal detoxification by different Bacillus species isolated from solar salterns. Scientifica. 2015;2015:1. DOI: 10.1155/2015/319760
   Google Scholar