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Articles

Genome-wide analysis and environmental response profiling of phosphate-induced-1 family genes in rice (Oryza sativa)

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Pages 627-638 | Received 14 Nov 2018, Accepted 03 Apr 2019, Published online: 22 Apr 2019

References

  • Cao X, Liao Y, Rong S, et al. Identification and characterization of a novel abiotic stress responsive sulphotransferase gene (OsSOT9) from rice. Biotechnol Biotechnol Equip. 2016;30:227–235.
  • Shen J, Yuan L, Zhang J, et al. Phosphorus dynamics: from soil to plant. Plant Physiol. 2011;156:997–1005.
  • Wasaki J, Yamamura T, Shinano T, et al. Secreted acid phosphatase is expressed in cluster roots of lupin in response to phosphorus deficiency. Plant Soil. 2003;248:129–136.
  • Devaiah BN, Nagarajan VK, Raghothama KG. Phosphate homeostasis and root development in Arabidopsis are synchronized by the zinc finger transcription factor ZAT6. Plant Physiol. 2007;145:147–159.
  • Ai P, Sun SJ, Fan X, et al. Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation. Plant J. 2009;57:798–809.
  • Rubio V, Linhares F, Solano R, et al. A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae. Genes Dev. 2001;15:2122–2133.
  • Sun L, Song L, Zhang Y, et al. Arabidopsis PHL2 and PHR1 act redundantly as the key components of the central regulatory system controlling transcriptional responses to phosphate starvation. Plant Physiol. 2016;170:499–514.
  • Shin H, Shin H-S, Dewbre GR, et al. Phosphate transport in Arabidopsis: Pht1;1 and Pht1;4 play a major role in phosphate acquisition from both low- and high-phosphate environments. Plant J. 2004;39:629–642.
  • Stefanovic A, Arpat AB, Bligny R, et al. Over-expression of PHO1 in Arabidopsis leaves reveals its role in mediating phosphate efflux. Plant J. 2011;66:689–699.
  • Wege S, Khan GA, Jung JY, et al. The EXS domain of PHO1 participates in the response of shoots to phosphate deficiency via a root-to-shoot signal. Plant Physiol. 2016;170:385–400.
  • Yang G, Ding G, Shi L, et al. Characterization of phosphorus starvation-induced gene BnSPX3 in Brassica napus. Plant Soil. 2012;350:339–351.
  • Guo W, Zhao J, Li X, et al. A soybean β-expansin gene GmEXPB2 intrinsically involved in root system architecture responses to abiotic stresses. Plant J. 2011;66:541–552.
  • Yi K, Wu Z, Zhou J, et al. OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice. Plant Physiol. 2005;138:2087–2096.
  • Ruan W, Guo M, Wu P, et al. Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice. Plant Mol Biol. 2016;93:1–14.
  • Dai X, Wang Y, Zhang WH. OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice. J Exp Bot. 2016;67:947–960.
  • Sano T, Kuraya Y, Amino S, et al. Phosphate as a limiting factor for the cell division of tobacco BY-2 cells. Plant Cell Physiol. 1999;40:1–8.
  • Sano T, Nagata T. The possible involvement of a phosphate-induced transcription factor encoded by Phi-2 gene from tobacco in ABA-signaling pathways. Plant Cell Physiol. 2002;43:12–20.
  • Sebastian P, Michiel VB, Dries V, et al. PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Res. 2015;43:974–981.
  • Farrar K, Evans IM, Topping JF, et al. EXORDIUM – a gene expressed in proliferating cells and with a role in meristem function, identified by promoter trapping in Arabidopsis. Plant J. 2003;33:61–73.
  • Schröder F, Lisso J, Müssig C. Expression pattern and putative function of EXL1 and homologous genes in Arabidopsis. Plant Signal Behav. 2012;7:22–27.
  • Schröder F, Lisso J, Lange P, et al. The extracellular EXO protein mediates cell expansion in Arabidopsis leaves. BMC Plant Biol. 2009;9:20.
  • Dellagi A, Birch PRJ, Heilbronn J, et al. A potato gene, erg-1, is rapidly induced by Erwinia carotovora ssp. atroseptica, Phytophthora infestans, ethylene and salicylic acid. J Plant Physiol. 2000;157:201–205.
  • Sousa AO, Assis ET, Pirovani CP, et al. Phosphate-induced-1 gene from Eucalyptus (EgPHI-1) enhances osmotic stress tolerance in transgenic tobacco. Genet Mol Res. 2014;13:1579–1588.
  • Chen R, Jiang Y, Dong J, et al. Genome-wide analysis and environmental response profiling of SOT family genes in rice (Oryza sativa). Genes Genom. 2012;34:549–560.
  • Saeed AI, Sharov V, White J, et al. TM4: a free, open-source system for microarray data management and analysis. BioTechniques. 2003;34:374–378.
  • Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–1874.
  • Bailey TL, Boden M, Buske FA, et al. MEME Suite: tools for motif discovery and searching. Nucleic Acids Res. 2009;37:202–208.
  • Kawahara Y. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice. 2013;6:1–10.
  • Hu B, Jin J, Guo A-Y, et al. GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics. 2015;31:1296–1297.
  • Nakai K, Horton P. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci. 1999;24:34–36.
  • Wang YX, Liu ZW, Wu ZJ, et al. Transcriptome-wide identification and expression analysis of the NAC gene family in tea plant [Camellia sinensis (L.) O. Kuntze]. PLoS One. 2016;11:e0166727.
  • Andrzej P, Maria BP, Aleksandra SB, et al. Heat stress affects Pi-related genes expression and inorganic phosphate deposition/accumulation in barley. Front Plant Sci. 2016;7:926.
  • Force A, Lynch M, Pickett FB, et al. Preservation of duplicate genes by complementary, degenerative mutations. Genetics. 1999;151:1531–1545.
  • Carene R, Loic P, Gaut BS. Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol. 2006;2:e115.
  • Freeling M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu Rev Plant Biol. 2009;60:433–453.
  • Jiang SY, González JM, Ramachandran S. Comparative genomic and transcriptomic analysis of tandemly and segmentally duplicated genes in rice. PLoS One. 2013;8:e63551.
  • Qiao X, Yin H, Li L, et al. Different modes of gene duplication show divergent evolutionary patterns and contribute differently to the expansion of gene families involved in important fruit traits in pear (Pyrus bretschneideri). Front Plant Sci. 2018;9:161.
  • Kumar S, Asif MH, Chakrabarty D, et al. Differential expression of rice lambda class GST gene family members during plant growth, development, and in response to stress conditions. Plant Mol Biol Rep. 2013;31:569–580.
  • Fahad S, Hussain S, Bano A, et al. Potential role of phytohormones and plant growth-promoting rhizobacteria in abiotic stresses: consequences for changing environment. Environ Sci Pollut Res. 2015;22:4907–4921.
  • Liu S, Cao X, Liao Y, et al. Identification and characterization of a novel abiotic stress responsive ATPase gene from rice. Plant Omics. 2015;8:169–177.
  • Herms DA, Mattson WJ. The Dilemma of plants: to grow or defend. Q Rev Biol. 1992;67:283–335.
  • Narusaka Y, Nakashima K, Shinwari ZK, et al. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 2003;34:137–148.