Isolation, characterization and molecular identification of a halotolerant Bacillus megaterium CTBmeg1 able to grow on halogenated compounds

References

• Oren A, Gurevich P, Azachi M, et al. Microbial degradation of pollutants at high salt concentrations. Biodegradation. 1992;3:387–398.
   Google Scholar
• Le Borgne S, Paniagua D, Vazquez-Duhalt R. Biodegradation of organic pollutants by halophilic bacteria and archaea. J Mol Microbiol Biotechnol. 2008;15:74–92.
   PubMed Web of Science ®Google Scholar
• Duarte CM, Holmer M, Olsen Y, et al. Will the oceans help feed humanity?. Bioscience. 2009;59:967–976.
   Web of Science ®Google Scholar
• Besseling E, Wegner A, Foekema EM, et al. Effects of microplastic on fitness and PCB bioaccumulation by the lugworm Arenicola marina (L.). Environ Sci Technol. 2013;47:593–600.
   PubMed Web of Science ®Google Scholar
• Lin M, Hu X, Chen W, et al. Biodegradation of phenanthrene by Pseudomonas sp. BZ-3, isolated from crude oil contaminated soil. Int Biodeterior Biodegrad. 2014;94:176–181.
   Web of Science ®Google Scholar
• Anyasi RO, Atagana HI. Biological Remediation of polychlorinated biphenyls (PCB) in the environment by microorganisms and plants. Afr J Biotechnol. 2011;10:18916–18938.
   Google Scholar
• Wei X, Jiang Y, Chen X, et al. Amycolatopsis flava sp. nov., a halophilic actinomycete isolated from dead sea. Antonie Van Leeuwenhoek. 2015;108:879–885.
   PubMed Web of Science ®Google Scholar
• Mehrshad M, Amoozegar MA, Makhdoumi A, et al. Halovarius luteus gen. nov., sp. nov., a novel extremely halophilic archaeon from Urmia salt lake, Iran. Int J Syst Evol Microbiol. 2015;65:2420–2425.
   PubMed Web of Science ®Google Scholar
• Baati H, Amdouni R, Gharsallah N, et al. Isolation and characterization of moderately halophilic bacteria from Tunisian solar saltern. Curr Microbiol. 2010;60:157–161.
   PubMed Web of Science ®Google Scholar
• Birbir M, Ogan A, Calli B, et al. Enzyme characteristics of extremely halophilic archaeal community in tuzkoy salt mine, Turkey. World J Microbiol Biotechnol. 2004;20:613–621.
   Web of Science ®Google Scholar
• Sanchez-Porro C, Martin S, Mellado E, et al. Diversity of moderately halophilic bacteria producing extracellular hydrolytic enzymes. J Appl Microbiol. 2003;94:295–300.
   PubMed Web of Science ®Google Scholar
• Tazi L, Breakwell DP, Harker AR, et al. Life in extreme environments: microbial diversity in Great Salt Lake, Utah. Extremophiles. 2014;18:525–535.
   PubMed Web of Science ®Google Scholar
• Birbir M, Kalli N, Johannson C. Examination of salt quality of Sereflikochisar lake used in the Turkish leather industry. J Soc Leath Tech Chem. 2002;86:112–117.
   Web of Science ®Google Scholar
• Birbir M, Sesal C. Extremely halophilic bacterial communities in Şereflikoçhisar salt lake in Turkey. Turk J Biol. 2003;27:7–22.
   Google Scholar
• Edbeib MF, Wahab RA, Huyop F. Halophiles: biology, adaptation, and their role in decontamination of hypersaline environments. World J Microbiol Biotechnol. 2016;32:1–23.
   PubMed Web of Science ®Google Scholar
• Mongodin EF, Nelson KE, Daugherty S, et al. The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. Proc Natl Acad Sci USA. 2005;102:18147–18152.
   PubMed Web of Science ®Google Scholar
• Eisenberg H. Life in unusual environments: progress in understanding the structure and function of enzymes from extreme halophilic bacteria. Arch Biochem Biophys. 1995;318:1–5.
   PubMed Web of Science ®Google Scholar
• Karan R, Khare SK. Purification and characterization of a solvent-stable protease from Geomicrobium sp. Emb2. Environ Technol. 2010;31:1061–1072.
   PubMed Web of Science ®Google Scholar
• Gomes J, Steiner W. The biocatalytic potential of extremophiles and extremozymes. Food Technol Biotechnol. 2004;42:223–235.
   Web of Science ®Google Scholar
• Edbeib MF, Wahab RA, Kaya Y, et al. In silico characterization of a novel dehalogenase (DehHX) from the halophile Pseudomonas halophila HX isolated from Tuz Gölü lake, Turkey: insights into a hypersaline-adapted dehalogenase. Ann Microbiol. 2017;67:371–382.
   Web of Science ®Google Scholar
• Häggblom MM, Knight VK, Kerkhof LJ. Anaerobic decomposition of halogenated aromatic compounds. Environ Pollut. 2000;107:199–207.
   PubMed Web of Science ®Google Scholar
• Van Pée KH, Unversucht S. Biological dehalogenation and halogenation reactions. Chemosphere. 2003;52:299–312.
   PubMed Web of Science ®Google Scholar
• Shahidul Islam M, Tanaka M. Impacts of pollution on coastal and marine ecosystems including coastal and marine fisheries and approach for management: a review and synthesis. Mar Pollut Bull. 2004;48:624–649.
   PubMed Web of Science ®Google Scholar
• Birnbaum LS, Fenton SE. Cancer and developmental exposure to endocrine disruptors. Environ Health Perspect. 2003;111:389–394.
   PubMed Web of Science ®Google Scholar
• Qing Li Q, Loganath A, Seng Chong Y, et al. Persistent organic pollutants and adverse health effects in humans. Part A. J Toxicol Environ Health. 2006;69:1987–2005.
   PubMed Web of Science ®Google Scholar
• Hayes TB, Case P, Chui S, et al. Pesticide mixtures, endocrine disruption, and amphibian declines: are we underestimating the impact?. Environ Health Perspect. 2006;114:40–50.
   PubMed Web of Science ®Google Scholar
• Chiba Y, Yoshida T, Ito N, et al. Isolation of a bacterium possessing a haloacid dehalogenase from a marine sediment core. Microbes Environ. 2009;24:276–279.
   PubMed Web of Science ®Google Scholar
• Zhang J, Xin Y, Cao X, et al. Purification and characterization of 2-haloacid dehalogenase from marine bacterium Paracoccus sp. Deh99, isolated from marine sponge Hymeniacidon perlevis. J Ocean Univ China. 2014;13:91–96.
   Web of Science ®Google Scholar
• Novak HR, Sayer C, Isupov MN, et al. Biochemical and structural characterisation of a haloalkane dehalogenase from a marine Rhodobacteraceae. FEBS Lett. 2014;588:1616–1622.
   PubMed Web of Science ®Google Scholar
• Rye CA, Isupov MN, Lebedev AA, et al. Biochemical and structural studies of a l-haloacid dehalogenase from the thermophilic archaeon Sulfolobus tokodaii. Extremophiles. 2009;13:179–190.
   PubMed Web of Science ®Google Scholar
• Novak HR, Sayer C, Panning J, et al. Characterisation of an l-haloacid dehalogenase from the marine psychrophile Psychromonas ingrahamii with potential industrial application. Mar Biotechnol. 2013;15:695–705.
   PubMed Web of Science ®Google Scholar
• Drienovska I, Chovancova E, Koudelakova T, et al. Biochemical characterization of a novel haloalkane dehalogenase from a cold-adapted bacterium. Appl Environ Microbiol. 2012;78:4995–4998.
   PubMed Web of Science ®Google Scholar
• Oren A. Industrial and environmental applications of halophilic microorganisms. Environ Technol. 2010;31:825–834.
   PubMed Web of Science ®Google Scholar
• Yildiz M, Soğanci AS. Evaluation of geotechnical properties of the salt layers on the lake tuz. Sci Res Essays. 2010;5:2656–2663.
   Web of Science ®Google Scholar
• Hareland WA, Crawford RL, Chapman PJ, et al. Metabolic function and properties of 4-hydroxyphenylacetic acid 1-hydroxylase from Pseudomonas acidovorans. J Bacteriol. 1975;121:272–285.
   PubMed Web of Science ®Google Scholar
• Kloos WE, Tornabene TG, Schleifer KH. Isolation and characterization of micrococci from human skin, including two new species: Micrococcus lylae and Micrococcus kristinae. Int J Syst Bacteriol. 1974;24:79–101.
   Google Scholar
• Garrity G, Boone DR, Castenholz RW. Bergey's manual of systematic bacteriology: Volume one: the Archaea and the deeply branching and phototrophic bacteria. New York: Springer; 2012.
   Google Scholar
• Faller A, Schleifer KH. Modified oxidase and benzidine tests for separation of staphylococci from micrococci. J Clin Microbiol. 1981;13:1031–1035.
   PubMed Web of Science ®Google Scholar
• Colwell RR, Grigorova R. Current methods for classification and identification of microorganisms. Methods Microbiol. 1987;19:405–458.
   Web of Science ®Google Scholar
• Kumar S, Stecher G, Tamura K. Mega7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–1874.
   PubMed Web of Science ®Google Scholar
• Feng N-X, Yu J, Mo C-H, et al. Biodegradation of di-n-butyl phthalate (DBP) by a novel endophytic Bacillus megaterium strain YJB3. Sci Total Environ. 2018;616:117–127.
   PubMed Web of Science ®Google Scholar
• Zhang J, Liu J, Meng L, et al. Isolation and characterization of plant growth-promoting rhizobacteria from wheat roots by wheat germ agglutinin labeled with fluorescein isothiocyanate. J Microbiol. 2012;50:191–198.
   PubMed Web of Science ®Google Scholar
• Liu M, Luo K, Wang Y, et al. Isolation, identification and characteristics of an endophytic quinclorac degrading bacterium Bacillus megaterium Q3. PLoS One. 2014;9:e108012.
   PubMed Web of Science ®Google Scholar
• Li W, Xie X, Shi Q, et al. A study of the microbes and efficiency of the preservative system of a sauce. China Condiment. 2009;9:43–46.
   Google Scholar
• Edbeib MF, Wahab RA, Huyop F. Characterization of an α-haloalkanoic acid–degrading Pseudomonas aeruginosa MX1isolated from contaminated seawater. Bioremediat J. 2016;20:89–97.
   Web of Science ®Google Scholar
• Oren A. Microbial life at high salt concentrations: phylogenetic and metabolic diversity. Saline Syst. 2008;4:2–14.
   PubMedGoogle Scholar
• Litchfield CD, Gillevet PM. Microbial diversity and complexity in hypersaline environments: a preliminary assessment. J Ind Microbiol Biotechnol. 2002;28:48–55.
   PubMed Web of Science ®Google Scholar
• Oren A. Molecular ecology of extremely halophilic archaea and bacteria. FEMS Microbiol Ecol. 2002;39:1–7.
   PubMed Web of Science ®Google Scholar
• Garabito M, Márquez M, Ventosa A. Halotolerant bacillus diversity in hypersaline environments. Can J Microbiol. 1998;44:95–102.
   Web of Science ®Google Scholar
• Sorokin DY, Tourova TP, Galinski EA, et al. Extremely halophilic denitrifying bacteria from hypersaline inland lakes, Halovibrio denitrificans sp. nov. and Halospina denitrificans gen. nov., sp. nov., and evidence that the genus name Halovibrio fendrich 1989 with the type species Halovibrio variabi. Int J Syst Evol Microbiol. 2006;56:379–388.
   PubMed Web of Science ®Google Scholar
• Hill KE, Marchesi JR, Weightman AJ. Investigation of two evolutionarily unrelated halocarboxylic acid dehalogenase gene families. J Bacteriol. 1999;181:2535–2547.
   PubMed Web of Science ®Google Scholar