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Articles

Genetic diversity of Herpetospermum caudigerum (Ser.) Baill using AFLP and chloroplast microsatellites

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Pages 1260-1268 | Received 07 Mar 2019, Accepted 09 Jul 2019, Published online: 10 Sep 2019

References

  • Alarcon M, Vargas P, Saez L, et al. Genetic diversity of mountain plants: two migration episodes of Mediterranean Erodium (Geraniaceae). Mol Phylogenet Evol. 2012;63:866–876.
  • Lockhart PJ, Mclenachan PA, Havell D, et al. Phylogeny, dispersal and radiation of New Zealand alpine buttercups: molecular evidence under split decomposition. Ann Missouri Botanic Garden. 2001;88:458–477.
  • Wang J, Li Z, Guo Q, et al. Genetic variation within and between populations of a desert poplar (Populus euphratica) revealed by SSR markers. Ann Forest Sci. 2011;68:1143–1149.
  • Cascante A, Quesada M, Lobo JJ, et al. Effects of dry tropical forest fragmentation on the reproductive success and genetic structure of the tree Samanea saman. Conserv Biol. 2002;16:137–147.
  • Thiel T, Michalek W, Varshney RK, et al. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet.. 2003;106:411–422.
  • Zhang M, Deng Y, Zhang HB, et al. Two new coumarins from Herpetospermum caudigerum. Chem Pharm Bull.. 2008;56:192–193.
  • Yang L, Suo Y, Zhou C, et al. Study on trace elements in seeds of Herpetospermum penduculosum (ser) Baill. Trace Element Sci. 2003;10:45–47.
  • Jiang X, Zhang H, Mehmood K, et al. Protective effects of Herpetospermum caudigerum extracts against liver injury induced by carbon tetrachloride in mouse. J Biol Regulator Homeost Agent. 2018;32:699–704.
  • Tian Y, Xing C, Cao Y, et al. Evaluation of genetic diversity on Prunus mira Koehne by using ISSR and RAPD markers. Biotechnol Biotechnol Equip. 2015;29:1053–1061.
  • Xing C, Tian Y, Guan FC, et al. Evaluation of genetic diversity in Amygdalus mira (Koehne) Ricker using SSR and ISSR markers. Plant Syst Evol. 2015;301:1055–1064.
  • Wen Y, Uchiyama K, Ueno S, et al. Assessment of the genetic diversity and population structure of Maire yew (Taxus chinensis var. mairei) for conservation purposes. Can J Res. 2018;48:589–598.
  • Wang HL, Zhou CF, Suo YR. Extraction of Herpetospermum peduncles (Ser.) Baill. Seed oil with supercritical carbon dioxide and analysis of the fatty acids using GC/MS. Anal Test Technol Instrum. 2006;12:42–46.
  • Zhao XE, Suo YR, Wang LY, et al. Analysis of carbohydrates in a Tibetan medicine using new labeling reagent, 1-(2-naphthyl)-3-methyl-5-pyrazolone, by HPLC with DAD detection and ESI-MS identification. J Liquid Chromatogr Related Technol. 2008;31:2375–2400.
  • Griffith MP, Calonje M, Meerow AW, et al. Can a botanic garden cycad collection capture the genetic diversity in a wild population? Int J Plant Sci. 2015;176:1–10.
  • Garcíalor A, Luro F, Navarro L, et al. Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies. Mol Genet Genomic. 2012;287:77–94.
  • Liang M, Yang XM, Li H, et al. De Novo transcriptome assembly of pummelo and molecular marker development. PLoS One. 2015;10:e0120615.
  • Sanabam R, Singh NS, Sahoo D, et al. Genetic relationship of rough lemon landraces and under-utilised citrus genotypes from North-East India revealed by SSR and RAPD markers. Trees. 2018;32(4):1043–1059.
  • Zhang ZX, Niu HY, Guo X, et al. Genetic diversity and genetic structure of Corydalis tomentella Franch (Papaveraceae), an endangered herb species from Central China. Biochem Syst Ecol. 2015;63:27–33.
  • Arias M, Hernandez M, Remondegui N, et al. First genetic linkage map of Taraxacum koksaghyz Rodin based on AFLP, SSR, COS and EST-SSR markers. Sci Rep. 2016;6:29.
  • Wang YL, Guo J, Zhao GF. Chloroplast microsatellite diversity of Clintonia udensis (Liliaceae) populations in East Asia. Biochem Syst Ecol. 2011;39:22–30.
  • Wang HX, Chen Y, Cai ZP. Study on seed germination character of Tibet Herpetospermum pedunculosum(ser.)C.B.Clarke. Northern Horticult. 2010;21:215–217.
  • Xin FM, Zang JC, Lan XZ. Callus induction and plant regeneration in Herpetospermum pedunculosum. Chin Trad Herb Drug. 2012;43:360–363.
  • Meng FJ, Peng M, Wang RD, et al. Analysis of genetic diversity in Aconitum kongboense L. revealed by AFLP markers. Biochem Syst Ecol. 2014;57:388–394.
  • Costa R, Pereira G, Garrido I, et al. Comparison of RAPD, ISSR, and AFLP molecular markers to reveal and classify orchardgrass (Dactylis glomerata L.) germplasm variations. PLoS One. 2016;11:e0152972.
  • Li S, Gan X, Han H, et al. Low within-population genetic diversity and high genetic differentiation among populations of the endangered plant Tetracentron sinense Oliver revealed by inter-simple sequence repeat analysis. Ann Forest Sci. 2018;75:74.
  • Phumichai C, Phumichai T, Wongkaew A. Novel chloroplast microsatellite (cpSSR) markers for genetic diversity assessment of cultivated and Wild Hevea RUBBER. Plant Mol Biol Rep.. 2015;33:1486–1498.
  • Wang Y, Jiang H, Peng S, et al. Genetic structure in fragmented populations of Hippophae rhamnoides ssp. sinensis in China investigated by ISSR and cpSSR markers. Plant Syst Evol.. 2011;295:97–107.
  • Peakall R, Smouse PE. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Note. 2006;6:288–295.
  • Marques I, Shiposha V, Lopez-Alvarez D, et al. Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon. BMC Evol Biol. 2017;17:139.
  • Excoffier L, Estoup A, Cornuet JM. Bayesian analysis of an admixture model with mutations and arbitrarily linked markers. Genetics. 2005;169:1727–1738.
  • Chiarini FE, Scaldaferro MA, Bernardello G, et al. Cryptic genetic diversity in Solanum elaeagnifolium (Solanaceae) from South America. Aust J Bot. 2018;66:531. [cited 2019 Jun 29]
  • Plenk K, Bardy K, Hohn M, et al. No obvious genetic erosion, but evident relict status at the westernmost range edge of the Pontic-Pannonian steppe plant Linum flavum L. (Linaceae) in Central Europe. Ecol Evol. 2017;7:6527–6539.
  • Li JM, Jin ZX, Tan T. Genetic diversity and differentiation of Sinocalycanthus chinensis populations revealed by chloroplast microsatellite (cpSSRs) markers. Biochem Syst Ecol. 2012;41:48–54.
  • Castro I, Pinto-Carnide O, Ortiz JM, et al. Chloroplast genome diversity in Portuguese grapevine. Mol Biotechnol. 2013;54:528–540.
  • Yotsukura N, Maeda T, Abe T, et al. Genetic differences among varieties of Saccharina japonica in northern Japan as determined by AFLP and SSR analyses. J Appl Phsycol. 2016;28:3043–3055.
  • Peng M, Zong X, Wang C, et al. Genetic diversity of strawberry (Fragaria ananassa Duch.) from the Motuo County of the Tibet Plateau determined by AFLP markers. Biotechnol Biotechnol Equip. 2015;29:1–6.
  • Saeed A, Darvishzadeh R. Association analysis of biotic and abiotic stresses resistance in chickpea (Cicer spp.) using AFLP markers. Biotechnol Biotechnol Equip. 2017;31:1–11.
  • Ohsawa T, Tsuda Y, Saito Y, et al. The genetic structure of Quercus crispula in northeastern Japan as revealed by nuclear simple sequence repeat loci. J Plant Res.. 2011;124:645–654.
  • Chen T, Wang XR, Tang HR, et al. Genetic diversity and population structure of Chinese Cherry revealed by chloroplast DNA trnQ-rps16 intergenic spacers variation. Genet Resour Crop Evol.. 2013;60:1859–1871.
  • Wang R, Compton SG, Chen XY. Fragmentation can increase spatial genetic structure without decreasing pollen-mediated gene flow in a wind-pollinated tree. Molecular Ecology. 2011;20:4421–4432.
  • Jia J, Zeng LQ, Gong X. High genetic diversity and population differentiation in the critically endangered plant species Trailliaedoxa gracilis (Rubiaceae). Plant Mol Biol Rep. 2016;34:327–338.
  • Gong X, Luan SS, Hung KH, et al. Population structure of Nouelia insignis (Asteraceae), an endangered species in southwestern China, based on chloroplast DNA sequences: recent demographic shrinking. J Plant Res.. 2011;124:221–230.
  • Schaal BA, Hayworth DA, Olsen KM, et al. Phylogeographic studies in plants: problems and prospects. Mol Ecol. 1998;7:465–474.
  • Petit RJ, Mousadik AE, Pons O. Identifying populations for conservation on the basis of genetic markers. Conserv Biol. 2008;12:844–855.
  • Sun M, Al E. Deep phylogenetic incongruence in the angiosperm clade Rosidae. Mol Phylog Evol. 2015;83:156–166.
  • De-Xing Z, Hewitt GM. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol Ecol. 2010;12:563–584.
  • Golestan Hashemi FS, Ismail MR, Rafii MY, et al. Critical multifunctional role of the betaine aldehyde dehydrogenase gene in plants. Biotechnol Biotechnol Equip. 2018;32:815–829.
  • Jiang Y, Liu X, Xiang W, et al. Genetic diversity and structure analysis of the endangered plant species Horsfieldia hainanensis Merr. in China. Biotechnol Biotechnol Equip. 2017;32:95–101.
  • Erfani-Moghadam J, Zarei A. Assessment of genetic structure among different pear species (Pyrus spp.) using apple-derived SSR and evidence of duplications in the pear genome. Biotechnol Biotechnol Equip. 2018;32:591–601.
  • Guan FC, Wang C, Quan H, et al. Investigation and taxonomy of wild pedunculate herpetospermum species distributed in Tibet. Southwest China J Agric Sci. 2011;24:832–834.
  • Li C, Shimono A, Shen HH, et al. Phylogeography of Potentilla fruticosa, an alpine shrub on the Qinghai-Tibetan plateau. J Plant Ecol. 2010;3:9–15.