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Articles

Genetic diversity and variation of Huperzia serrata (Thunb. ex Murray) Trevis. population in Vietnam revealed by ISSR and SCoT markers

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Pages 1525-1534 | Received 28 May 2019, Accepted 17 Sep 2019, Published online: 12 Oct 2019

References

  • Alikhani L, Rahmani M-S, Shabanian N, et al. Genetic variability and structure of Quercus brantii assessed by ISSR, IRAP and SCoT markers. Gene. 2014;552(1):176–183.
  • Anatonovis J. Genetic variation within population In: Dirzor R, Sarukan J, editors. Perspectives on plant population biology. Sunderland (MA): Sinauer; 1984. p. 229–241.
  • Beardmore JA, et al. Extinction, survival and genetic variation In: Schoenwald-Cox CM, editor. Genetics and conservation. Menlo Park (CA): Benjamin-Cummings; 1983. p. 125–151.
  • Bradshaw WE, Holzapfel CM. Genetic response to rapid climate change: it’s seasonal timing that matters. Mol Ecol. 2008;17(1):157–166.
  • Chi VV. Vietnam medicinal plant dictionary. Ho Noi: Medicine Publish House; 1997. [Vietnamese].
  • Huang J, He C. Population structure and genetic diversity of Huperzia serrata (Huperziaceae) based on amplified fragment length polymorphism (AFLP) markers. Bioch Syst Ecol. 2010;38(6):1137–1147.
  • Ferrante M, Yeh J. Head and flux variability in heterogeneous unsaturated soils under transient flow conditions. Water Resour Res. 2010;5:1471–1479.
  • Hogbin PM, Peakall R. Evaluation of the contribution of the genetic research to the management of the endangered plant Zieria prostrate. Conserv Biol. 1999;13(3):514–522.
  • Hoffmann AA, Sgrò CM. Climate change and evolutionary adaption. Review. 2011;40:479–485.
  • Collard BCY, Mackill DJ. Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants. Plant Mol Biol Rep. 2009;27(1):86–93.
  • Kumar P, Gupta VK, Mirsa AK, et al. Potential of molecular markers in plant biotechnology. Plant Omics J. 2009;2(4):141–162.
  • Jaswinder K, Rajmeet S, et al. A systematic review on Huperzia serrata. Int J Pharmacog Phytochem Res. 2016; 8(8):1250–1255.
  • Lin L, Hu Z-Y, Ni S, et al. Genetic diversity of Camellia japonica (Theaceae), a species endangered to East Asia, detected by inter-simple sequence repeat (ISSR). Biochem Syst Ecol. 2013;50:199–206.
  • Lu X, Liu L, Gong Y, et al. Cultivar identification and genetic diversity analysis of broccoli and its related species with RAPD and ISSR markers. Sci Hortic. 2009;122(4):645–648.
  • Luo C, He X-h, Chen H, et al. Genetic diversity of mango cultivars estimated using SCoT and ISSR markers. Biochem Syst Ecol. 2011;39(4–6):676–684.
  • Ma X, Tan C, Zhu D, et al. A survey of potential huperzine A natural resources in China: the Huperziaceae. J Ethnophar. 2006;104(1–2):54–67.
  • Pour-Aboughadareh A, Mahmoudi M, Moghaddam M, et al. Agro-morphological and molecular variability in Triticum boeoticum accessions from Zagros Mountains, Iran. Genet Resour Crop Evol. 2017;64(3):545–556.
  • Etminan A, Pour-Aboughadareh A, et al. Evaluation of genetic diversity in a mini core collection of Iranian durum wheat germplasms. J Anim Plant Sci. 2017;27(5):1582–1587.
  • Igwe DO, Afiukwa CA, Ubi BE, et al. Assessment of genetic diversity in Vigna unguiculata L. (Walp) accessions using inter-simple sequence repeat (ISSR) and start codon targeted (SCoT) polymorphic markers. BMC Genet. 2017;18(1):98–101.
  • Abdel-Lateif KS, Hewedy OA. Genetic diversity among Egyptian wheat cultivars using SCoT and ISSR markers. Genet. 2018;50:36–45.
  • Etminan A, Pour-Aboughadareh A, Noori A, et al. Genetic relationships and diversity among wild Salvia accessions revealed by ISSR and SCoT markers. Biotechnol Biotechnol Equip. 2018;32(3):610–617.
  • Tian HZ, Han LX, Zhang JL, et al. Genetic diversity in the endangered terrestrial orchid Cypripedium japonicum in East Asia: insights into population history and implications for conservation. Sci Rep. 2018;8(1):64–67.
  • Qaderi A, Omidi M, Pour-Aboughadareh A, et al. Molecular diversity and phytochemical variability in the Iranian poppy (Papaver bracteatum Lindl.): a baseline for conservation and utilization in future breeding programmes. Indust Crops Prod. 2019;130:237–247.
  • Trieu LN, Mien NT, et al. Genetic diversity of Panax stipuleanatus Tsai in North Vietnam detected by Inter simple sequence repeat (ISSR) markers. Biotechnol Biotechnolog Equip. 2016;30(3):506–511.
  • Admed MA. PCR techniques. Zagazig, Egypt: Department of Genetics, Zagazig University; 2005.
  • McDermott JM, McDonald BA. Gene flow in plant pathosystems. Annu Rev Phytopathol. 1993;31(1):353–373.
  • Nagoaka T, Ogihara Y. Applicability of inter-simple sequence repeat polymorphism in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor Appl Genet. 1997;93:133–139.
  • Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 1978;89(3):583–590.
  • Nybom H, Bartish I. Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Persp Pl Ecol Evol Syst. 2000;3(2):93–114.
  • Peakal R, Smouse PE. GENALEX 6: genetic analysis in Excel: population genetic software for teaching and research. Mol Ecol Notes. 2006; 6:288–195.
  • Rohlf FJ. NTSYSpc numerical taxonomy and multivariate analysis system version 2.1 – user Guide. New York: Applied Biostatistics Inc.; 2004.
  • Roy SC, Chakraborty BN. Genetic diversity and relationships among tea (Camellia sinensis) cultivars as revealed by RAPD and ISSR based fingerprinting. Indian J Biotechnol. 2009;8:370–376.
  • Slatkin M. Gene flow in natural populations. Annu Rev Ecol S. 1985;16:393–430.
  • de Vicente MC, Lopez C, et al. Genetic diversity analysis with molecular marker data: learning module. Rome, Italy: International Plant Genetic Resources Institute (IPGRI) and Cornell University; 2003.
  • Hedrén M, Olofsson SN. High levels of genetic diversity in marginal populations of the marsh orchid Dactylorhiza majalis subsp. majalis. Nordic J Bot. 2018;36(4):e01747.
  • Hamrick JL, Godt M. Allozyme diversity in cultivated crops. Crop Sci. 1997;37(1):26–30.
  • Kumar J, Agrawal V. Assessment of genetic diversity, population structure and sex identification in dioecious crop, Trichosanthes dioica employing ISSR, SCoT and SRAP markers. Heliyon. 2019;5(3):e01346. e013462019.
  • Yang J-C, Li Q-Q, Yu N, et al. Genetic diversity and structure among natural populations of Sindora glabra in Hainan Island, China as revealed by ISSR markers. Bioch Syst Ecol. 2016;69:145–151.
  • Petrova G, Petrov S, Möller M, et al. Low genetic diversity in small leading edge populations of the European paleoendemic Ramonda serbica (Gesneriaceae) in Bulgaria. Nordic J Bot. 2018;36(6):njb-01655.
  • Wang D-L, Qi Y-D, Feng J-D, et al. An efficient regeneration pattern via Gemmae for Huperzia serrata (Thunb. ex Murray) Trev. in Hainan Province, China. Amer Fern J. 2011;101(3):182–192.
  • Zietkiewicz E, Rafalski A, Labuda D, et al. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics. 1994;20(2):176–183.
  • Van NK, Hien NT, Lok PK, et al. Bioclimatic diagrams of Vietnam. Hanoi: Vietnam National University Publish House; 2000.
  • Weising K, Nymbon H, Wolff K, et al. DNA fingerprinting in plants principles, methods, and applications. 2nd ed. Boca Raton (FL): CRC Press; Taylor & Francis Group; 2005.