Molecular characterization and function analysis of the rice OsDUF1664 family

References

• Nadeem SM, Ahmad M, Zahir ZA, et al. The role of mycorrhizae and plant growth promoting rhizobacteria (PGPR) in improving crop productivity under stressful environments. Biotechnol Adv. 2014;32(2):429–448.
   PubMed Web of Science ®Google Scholar
• Baillo EH, Kimotho RN, Zhang ZB, et al. Transcription factors associated with abiotic and biotic stress tolerance and their potential for crops improvement. Genes. 2019;10(10):771.
   PubMed Web of Science ®Google Scholar
• Boyer JS. Plant productivity and environment. Science. 1982;218(4571):443–448.
   PubMed Web of Science ®Google Scholar
• Taylor NL, Tan YF, Jacoby RP, et al. Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes. J Proteomics. 2009;72(3):367–378.
   PubMed Web of Science ®Google Scholar
• Hu Y, Wu QY, Peng Z, et al. Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure. Sci Rep. 2017;7(1):15950.
   PubMedGoogle Scholar
• Golldack D, Luking I, Yang O. Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network. Plant Cell Rep. 2011;30(8):1383–1391.
   PubMed Web of Science ®Google Scholar
• Bateman A, Coggill P, Finn RD. DUFs: families in search of function. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010;66(Pt 10):1148–1152.
   PubMedGoogle Scholar
• Goodacre NF, Gerloff DL, Uetz P. Protein domains of unknown function are essential in bacteria. MBio. 2013;5(1):e00744-13.
   PubMed Web of Science ®Google Scholar
• Bischoff V, Nita S, Neumetzler L, et al. TRICHOME BIREFRINGENCE and its homolog AT5G01360 encode plant-specific DUF231 proteins required for cellulose biosynthesis in Arabidopsis. Plant Physiol. 2010;153(2):590–602.
   PubMed Web of Science ®Google Scholar
• Cao X, Yang KZ, Xia C, et al. Characterization of DUF724 gene family in Arabidopsis thaliana. Plant Mol Biol. 2010;72(1–2):61–73.
   PubMed Web of Science ®Google Scholar
• Mewalal R, Mizrachi E, Coetzee B, et al. The Arabidopsis domain of unknown function 1218 (DUF1218) containing proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) function redundantly to alter secondary cell wall lignin content. PLoS One. 2016;11(3):e0150254.
   PubMed Web of Science ®Google Scholar
• He X, Hou X, Shen Y, et al. TaSRG, a wheat transcription factor, significantly affects salt tolerance in transgenic rice and Arabidopsis. FEBS Lett. 2011;585(8):1231–1237.
   PubMed Web of Science ®Google Scholar
• Kim SJ, Ryu MY, Kim WT. Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress. Biochem Biophys Res Commun. 2012;420(1):141–147.
   PubMed Web of Science ®Google Scholar
• Luo C, Guo C, Wang W, et al. Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant Cell Rep. 2014;33(2):323–336.
   PubMed Web of Science ®Google Scholar
• Wang L, Shen R, Chen LT, et al. Characterization of a novel DUF1618 gene family in rice. J Integr Plant Biol. 2014;56(2):151–158.
   PubMed Web of Science ®Google Scholar
• Guo C, Luo C, Guo L, et al. OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice. J Integr Plant Biol. 2016;58(5):492–502.
   PubMed Web of Science ®Google Scholar
• Letunic I, Doerks T, Bork P. SMART: recent updates, new developments and status in 2015. Nucleic Acids Res. 2014;43:257–260.
   PubMed Web of Science ®Google Scholar
• Emanuelsson O, Brunak S, von Heijne G, et al. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc. 2007;2(4):953–971.
   PubMed Web of Science ®Google Scholar
• Tamura K, Dudley J, Nei M, et al. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 2007;24(8):1596–1599.
   PubMed Web of Science ®Google Scholar
• Li L, Liu C, Lian X. Gene expression profiles in rice roots under low phosphorus stress. Plant Mol Biol. 2010;72(4–5):423–432.
   PubMed Web of Science ®Google Scholar
• Li L, Xie C, Ye T, et al. Molecular characterization, expression pattern, and function analysis of the rice OsDUF866 family. Biotechnol Biotechnol Equip. 2017;31(2):243–249.
   Web of Science ®Google Scholar
• Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods. 2001;25(4):402–408.
   PubMed Web of Science ®Google Scholar
• LaVallie ER, DiBlasio EA, Kovacic S, et al. A thioredoxin gene fusion expression system that circumvents inclusion body formation in the E. coli cytoplasm. Biotechnology (N Y). 1993;11:187–193.
   PubMedGoogle Scholar
• Liang Y, Chen Q, Liu Q, et al. Exogenous silicon (Si) increases antioxidant enzyme activity and reduces lipid peroxidation in roots of salt-stressed barley (Hordeum vulgare L.). J Plant Physiol. 2003;160(10):1157–1164.
   PubMed Web of Science ®Google Scholar
• Wang X, Shi X, Hao B, et al. Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol. 2005;165(3):937–946.
   PubMed Web of Science ®Google Scholar
• Li L, Ye T, Xu J, et al. Molecular characterization and function analysis of the rice OsDUF946 family. Biotechnol Biotechnol Equip. 2017;31(3):477–485.
   Web of Science ®Google Scholar
• Li L, Ye T, Guan Y, et al. Genome-wide identification and analyses of the rice OsDUF936 family. Biotechnol Biotechnol Equip. 2018;32(2):309–315.
   Web of Science ®Google Scholar
• Li L, Lv M, Zhao L, et al. Molecular characterization and function analysis of the rice OsDUF829 family. Biotechnol Biotechnol Equip. 2018;32(3):550–557.
   Web of Science ®Google Scholar
• Lv M, Hou D, Zhang L, et al. Molecular characterization and function analysis of the rice OsDUF1191 family. Biotechnol Biotechnol Equip. 2019;33(1):1608–1615.
   Web of Science ®Google Scholar
• Zhu JK. Abiotic stress signaling and responses in plants. Cell. 2016;167(2):313–324.
   PubMed Web of Science ®Google Scholar
• Dubouzet JG, Sakuma Y, Ito Y, et al. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J. 2003;33(4):751–763.
   PubMed Web of Science ®Google Scholar
• Ito Y, Katsura K, Maruyama K, et al. Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. Plant Cell Physiol. 2006;47(1):141–153.
   PubMed Web of Science ®Google Scholar
• Su C, Wang Y, Hsieh TH, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol. 2010;153(1):145–158.
   PubMed Web of Science ®Google Scholar
• Miller G, Shulaev V, Mittler R. Reactive oxygen signaling and abiotic stress. Physiol Plant. 2008;133(3):481–489.
   PubMed Web of Science ®Google Scholar
• Mittler R. Oxidative stress, antioxidants and stress tolerance. Trends Plant Sci. 2002;7(9):405–410.
   PubMed Web of Science ®Google Scholar
• Gechev TS, Van Breusegem F, Stone JM, et al. Reactive oxygen species as signals that modulate plant stress responses and programmed cell death. Bioessays. 2006;28(11):1091–1101.
   PubMed Web of Science ®Google Scholar
• Mittler R, Vanderauwera S, Gollery M, et al. Reactive oxygen gene network of plants. Trends Plant Sci. 2004;9(10):490–498.
   PubMed Web of Science ®Google Scholar
• Li L, Lv M, Li J, et al. Molecular characterisation and function analysis of the rice OsDUF872 family. Biotechnol Biotechnol Equip. 2018;32(4):881–887.
   Web of Science ®Google Scholar
• Li L, Lv M, Li X, et al. The rice OsDUF810 family: OsDUF810.7 may be involved in the tolerance to salt and drought. Mol Biol. 2018;52(4):489–496.
   Web of Science ®Google Scholar