879
Views
0
CrossRef citations to date
0
Altmetric
Research Article

Whole genome sequencing and functional analysis of porcine-borne Bacillus coagulans LYBC06

ORCID Icon, , , , &
Pages 79-91 | Received 27 Jun 2022, Accepted 02 Dec 2022, Published online: 09 Jan 2023

References

  • Shi S, Liu J, Dong J, et al. Research progress on the regulation mechanism of probiotics on the microecological flora of infected intestines in livestock and poultry. Lett Appl Microbiol. 2022;74(5):647–655.
  • Kumar S, Tariq H, Singh A, et al. Significance of probiotics as feed additives in livestock and poultry nutrition. Indus J Anim Nutr. 2017;34(4):361–373.
  • Midhun SJ, Neethu S, Vysakh A, et al. Antagonism against fish pathogens by cellular components/preparations of Bacillus coagulans (MTCC-9872) and it’s in vitro probiotic characterisation. Curr Microbiol. 2018;75(9):1174–1181.
  • Cubas-Cano E, Venus J, González-Fernández C, et al. Assessment of different Bacillus coagulans strains for l-lactic acid production from defined media and gardening hydrolysates: effect of lignocellulosic inhibitors. J Biotechnol. 2020;323:9–16.
  • Zhang B, Zhang H, Yu Y, et al. Effects of Bacillus coagulans on growth performance, antioxidant capacity, immunity function and gut health in broilers. Poult Sci. 2021;100(6):e101168.
  • Amoah K, Huang QC, Tan BP, et al. Dietary supplementation of probiotic bacteria, Bacillus coagulans ATCC 7050, improves the growth performance, intestinal morphology, microflora, immune response, and disease confrontation of pacific white shrimp, Litopenaeus vannamei. Fish Shellfish Immunol. 2019;87:796–808.
  • Bucher T, Keren-Paz A, Hausser J, et al. An active β-lactamase is a part of an orchestrated cell wall stress resistance network of Bacillus subtilis and related rhizosphere species. Environ Microbiol. 2019;21(3):1068–1085.
  • Rosser CL, Jin L, Beauchemin KA, et al. 0471 The effect of binding feed enzymes to spores of Bacillius subtlis and Bacillius coagulans on in vitro NDF digestibility in ruminal batch cultures. J Anim Sci. 2016;94(suppl_5):e225–225.
  • Chauhan D, Patel Y, Doshi JA, et al. Draft genome sequence of Bacillus coagulans ZB29, a commercial probiotic strain. Microbiol Resour Ann. 2019;8:e01125.
  • Fang Q, Shu JJ, Tao L, et al. Isolation and identification of thermostable lactase-producing Bacillus coagulans T242. Adv Mat Res. 2013; 634–638:1253–1258.
  • Adeoti OM, Usman AT. The molecular characterization of Rhizobacteria isolates from Saki, Nigeria. EJBIO. 2021;2(2):26–38.
  • Rong M, Zheng X, Ye M, et al. Phenotypic plasticity of Staphylococcus aureus in liquid medium containing vancomycin. Front Microbiol. 2019;10:e809.
  • Green MR, Sambrook J. Molecular cloning: a laboratory manual. 4th ed. New York: Cold Spring Harbor Lab Press; 2012; p. 20–25.
  • Lin BS, Song ZZ, Jia YL, et al. Biological characteristics and genome-wide sequence analysis of endophytic nitrogen-fixing bacteria Klebsiella variicola GN02. Biotechnol Biotechnol Equip. 2019;33(1):108–117.
  • Darling AE, Mau B, Perna NT. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 2010;5(6):e11147.
  • Luo J, Lin BS, He YQ, et al. Comparative analysis of analytical methods of lactic acid content in microbial fermentation feeds. Feed Rev. 2012;5:37–39 (in Chinese).
  • Lin BS, Liu JM, Zhang X, et al. The flora compositions of nitrogen-fixing bacteria and the differential expression of nifH gene in Pennisetum giganteum z.x.lin roots. BioMed Res Int. 2021;2021:1–7.
  • Li Y, Liu F. C. Analysis of the copy number of exogenous genes in transgenic cotton using real-time quantitative PCR and the 2-△△CT method. Afr J Biotechnol. 2012;11:6226–6233.
  • Hung AT, Lin SY, Yang TY, et al. Effects of Bacillus coagulans ATCC 7050 on growth performance, intestinal morphology, and microflora composition in broiler chickens. Anim Prod Sci. 2012;52(9):874–879.
  • Gu SB, Zhao LN, Wu Y, et al. Potential probiotic attributes of a new strain of Bacillus coagulans CGMCC 9951 isolated from healthy piglet feces. World J Microbiol Biotechnol. 2015;31(6):851–863.
  • Yi Z, Ding QJ, Wang HC, et al. Genetic diversity and biological characteristics of Clostridium butyricum based on comparative genomics. Food Ferment Indus. 2020;46:5–12 (in Chinese).
  • Sun L, Zhang C, Lyu P, et al. Contributory roles of two l-lactate dehydrogenases for l-lactic acid production in thermotolerant Bacillus coagulans. Sci Rep. 2016;6:e37916.
  • Wang L, Cai Y, Zhu L, et al. Major role of NAD-dependent lactate dehydrogenases in the production of l-lactic acid with high optical purity by the thermophile Bacillus coagulans. Appl Environ Microbiol. 2014;80(23):7134–7141.
  • Coelho LF, Beitel SM, Sass DC, et al. High-titer and productivity of l-(+)-lactic acid using exponential fed-batch fermentation with Bacillus coagulans arr4, a new thermotolerant bacterial strain. J Biotech. 2018;8:e213.
  • Li J, Sang C, Yang J, et al. Stoichiometric imbalance and microbial community regulate microbial elements use efficiencies under nitrogen addition. Soil Biol Biochem. 2021;156:e108207.
  • Wang XY, Peng F, Dong G, et al. Identification and validation of appropriate reference genes for qRT-PCR analysis in Corynebacterium glutamicum. FEMS Microbiol Lett. 2018;365:1–8.