109
Views
1
CrossRef citations to date
0
Altmetric
Articles

Identification of 10 polymorphic microsatellite loci in the high montane gastropod Semilimax kotulae using high-throughput sequence data

, , &
Pages 20-24 | Received 31 May 2013, Published online: 22 Jan 2014

REFERENCES

  • Abury, S., Magning, F., Bonnet, V. & Preece, R.C. (2005) Multi-scale altitudinal patterns in species richness of land snail communities in south-eastern France. Journal of Biogeography 32, 985–998. doi: 10.1111/j.1365-2699.2005.01275.x
  • Bakkenes, M., Alkemade, J.R.M., Ihle, F., Leemans, R. & Latour, J.B. (2002) Assessing effects of forecasted climate change on the diversity and distribution of European higher plants for 2050. Global Change Biology 8, 390–407. doi: 10.1046/j.1354-1013.2001.00467.x
  • Bässler, C., Müller, J., Hothorn, T., Kneib, T., Badeck, F. & Dziock, F. (2009) Estimation of the extinction risk for high montane species as a consequence of global warming and assessment of their suitability as cross-taxon indicators. Ecological Indicators 10, 341–352. doi: 10.1016/j.ecolind.2009.06.014
  • Berry, P.M., Dawson, T.P., Harrison, P.A. & Pearson, R.G. (2002) Modelling potential impacts of climate change on the bioclimatic envelope of species in Britain and Ireland. Global Ecology and Biogeography 11, 453–462. doi: 10.1111/j.1466-8238.2002.00304.x
  • Blanca, J., Canizares, J., Roig, C., Ziarsolo, P., Nuez F. & Picó, B. (2011) Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae). BMC Genomics 12, 104. doi: 10.1186/1471-2164-12-104
  • Callen, D.F., Thompson, A.D., Shen, Y., Phillips, H., Richards, R.I., Mulley, J.C. & Sutherland, G.R. (1993) Incidence and origin of ‘null’ alleles in the (AC)n microsatellite markers. American Journal of Human Genetics 52, 922–927.
  • Castoe, T.A., Poole, A.W., Gu, W., Jason de Koning, A.P., Daza, J.M., Smith, E.N. & Pollock, D.D. (2010) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Molecular Ecology Resources 10, 341–347. doi: 10.1111/j.1755-0998.2009.02750.x
  • David, P., Pujol, B., Viard, F., Castella, V. & Goudet, J. (2007) Reliable selfing rate estimates from imperfect population genetic data. Molecular Ecology 16, 2474–2487. doi: 10.1111/j.1365-294X.2007.03330.x
  • Drummond, A.J., Ashton, B., Cheung, M., Heled, J., Kearse, M., Moir, R., Stones-Havas, S., Thierer, T. & Wilson, A. (2009) Geneious v4.7. Available online at http//www.geneious.com/. [Accessed on 9 January 2014.]
  • Evett, I. & Weir, B. (1998) Interpreting DNA evidence: Statistical genetics for forensic scientists. Sinauer Associates, Sunderland.
  • Faircloth, B.C. (2008) MSATCOMMANDER: detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources 8, 92–94. doi: 10.1111/j.1471-8286.2007.01884.x
  • Falkner, G. (1991) Vorschlag für eine Neufassung der Roten Liste der in Bayern vorkommenden Mollusken (Weichtiere). Mit einem revidierten systematischen Verzeichnis der in Bayern nachgewiesenen Molluskenarten. Schriftenreihe Bayer. Landesamt für Umweltschutz 97, 61–112.
  • Grabherr, G., Gottfried, M. & Pauli, H. (1994) Climate effects on mountain plants. Nature 369, 448–448. doi: 10.1038/369448a0
  • Hare, M.P., Karl, S.A. & Avise, J.C. (1996) Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves. Molecular Biology and Evolution 13, 334–345. doi: 10.1093/oxfordjournals.molbev.a025593
  • Hässlein, L. (1966). Die Molluskengesellschaften des Bayerischen Waldes und des anliegenden Donautals. Bericht der Naturforschenden Gesellschaft Augsburg 20, 1–176. (in German)
  • Hedrick, P.W. & Cockerham, C.C. (1986) Partial inbreeding, equilibrium heterozygosity and the heterozygosity paradox. Evolution 40, 856–861. doi: 10.2307/2408470
  • Hoarau, G., Rijnsdorp, A.D., van der Veer, H.W., Stam, W.T. & Olsen, J.L. (2002) Population structure of plaice (Pleuronectes platessa L.) in northern Europe: microsatellites revealed large-scale spatial and temporal homogeneity. Molecular Ecology 11, 1165–1176. doi: 10.1046/j.1365-294X.2002.01515.x
  • Hogan, B, Beddington, R., Costantini, F. & Lacy, E. (1994) Manipulating the mouse embryo. A laboratory manual. Cold Spring Harbor Laboratory Press, Woodbury, NY, pp. 497.
  • IPCC, 2007a. Climate change (2007) – the physical science basis, contribution of working group I to the fourth assessment report of the IPCC. Cambridge University Press, Cambridge & New York, pp. 996.
  • IPCC, 2007b. Climate change (2007) – impacts, adaption and vulnerability, contribution of working group II to the fourth assessment report of the IPCC. Cambridge University Press, Cambridge & New York, pp. 976.
  • Jarne, P. (1995) Mating system, bottlenecks and genetic polymorphism in hermaphroditic animals. Genetical Research 65, 193–207. doi: 10.1017/S0016672300033279
  • Kappes, H. (2005) Influence of coarse woody debris on the gastropod community of a managed calcareous beech forest in Western Europe. Journal of Molluscan Studies 71, 85–91. doi: 10.1093/mollus/eyi011
  • Kendall, M. & Stewart, A. (1977) The advanced theory of statistics, Volume 1. Macmillan, New York.
  • King, R.A., Read, D.S., Traugott, M. & Symondson, W.O.C. (2008) Molecular analysis of predation: a review of best practice for DNA-based approaches. Molecular Ecology 17, 947–963. doi: 10.1111/j.1365-294X.2007.03613.x
  • Müller, J., Bässler, C., Strätz, C., Klöcking, B. & Brandl, R. (2009) Molluscs and climate warming in a low mountain range national park. Malacologia 51, 89–109. doi: 10.4002/040.051.0106
  • Müller, J., Strätz, C. & Hothorn, T. (2005) Habitat factors for land snails in acid beech forests with a special focus on coarse woody debris. European Journal of Forest Research 124, 233–242. doi: 10.1007/s10342-005-0071-9
  • Opgenoorth, L. (2009) Identification and characterization of microsatellite markers in the tetraploid Juniperus tibetica Kom. using next generation sequencing. Conservation Genetics Resources 1, 253–255. doi: 10.1007/s12686-009-9062-3
  • Parmesan, C., Ryrholm, N., Stefanescu, C., Hill, J.K., Thomas, C.D., Descimon, H., Huntley, B., Kaila, L., Kullberg, J., Tammaru, T., Tennent, W.J., Thomas, J.A. & Warren, M. (1999) Poleward shifts in geographical ranges of butterfly species associated with regional warming. Nature 399, 579–583. doi: 10.1038/21181
  • Parmesan, C. & Yohe, G. (2003) A globally coherent fingerprint of climate change impacts across natural systems. Nature 421, 37–42. doi: 10.1038/nature01286
  • Root, T.L., Price, J.T. & Hall, K.R. (2003) ‘Fingerprint’ of global warming on animals and plants. Nature 421, 57–60. doi: 10.1038/nature01333
  • Rousset, F. (2008) Genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Molecular Ecology Resources 8, 103–106. doi: 10.1111/j.1471-8286.2007.01931.x
  • Rozen, S. & Skaletsky, H. (2000) Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology 132, 365–386.
  • Schuelke, M. (2000) An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology 18, 233–234. doi: 10.1038/72708
  • Selkoe, K.A. & Toonen, R.J. (2006) Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology Letters 9, 615–629. doi: 10.1111/j.1461-0248.2006.00889.x
  • Sternberg, M. (2000) Terrestrial gastropods and experimental climate change: a field study in a calcareous grassland. Ecological Research 15, 73–81. doi: 10.1046/j.1440-1703.2000.00327.x
  • Stoeckle, B.C., Cowley, D.E., Schaack, Y., Macdonald, K.S., Sallenave, R. & Kuehn, R. (2013) Microsatellites for North American Species of Triops (Branchiopoda: Notostraca). Journal of Crustacean Biology 33, 48–55. doi: 10.1163/1937240X-00002118
  • Tattersfield, P.C., Warui, C.M., Seddon, M.B. & Kiringe, W. (2001) Land-snail fauna of afromontane forests of Mount Kenya, Kenya: ecology, diversity and distribution pattern. Journal of Biogeography 28, 843–861. doi: 10.1046/j.1365-2699.2001.00606.x
  • Uminski, T. (1975) Life cycle in some Vitrinidae (Mollusca, Gastropoda) from Poland. Annales Zoologici 33, 17–33.
  • Valière, N. (2002) GIMLET: a computer program for analysing genetic individual identification data. Molecular Ecology Notes 2, 377–379.
  • Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M. & Shipley, P. (2004) MICRO-CHECKER: software for identifying and correcting errors in microsatellite data. Molecular Ecology Notes 4, 535–538. doi: 10.1111/j.1471-8286.2004.00684.x
  • Walden, H. (1981) Communities and diversity of land molluscs in Scandinavian woodlands. High diversity communities in taluses and boulder slopes in SW Sweden. Journal of Conchology 30, 351–372.
  • Walther, G.-R., Post, E., Convey, P., Menzel, A., Parmesan, C., Beebee, T.J.C., Fromentin, J-M., Hoegh-Guldenberg, O. & Bairlein, F. (2002) Ecological responses to recent climate change. Nature 416, 389–395. doi: 10.1038/416389a

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.