Population diversity of Cistopus indicus inferred from mitochondrial DNA (Cytochrome b) variation from China and Vietnam

References

• Casey, J., Jardim, E. & Martinsohn, J.T. (2016) The role of genetics in fisheries management under the E.E. common fisheries policy. Journal of Fish Biology 89, 2755–2767. doi: 10.1111/jfb.13151
   PubMed Web of Science ®Google Scholar
• Chang, K.M., Li, H., Lv, Z.M. & Chi, C.F. (2010) Genetic variation in different populations of Octopus variabilis in China coastal waters based on the COI gene analysis. Oceanologia et Limnologia Sinica 41, 307–314. (In Chinese with English abstract).
   Google Scholar
• Chen, X.J. (2009) World Cephalopods. Ocean Press, Beijing.
   Google Scholar
• Dong, Z.Z. (1988) Fauna Sinica, Mollusca, Cephalopoda. Science Press, Beijing. (In Chinese).
   Google Scholar
• Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 47–50.
   PubMed Web of Science ®Google Scholar
• Fu, Y.X. (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147, 915–925.
   PubMed Web of Science ®Google Scholar
• Guo, B.Y., Zhou, C., Lv, Z.M., Li, J.J. & Wu, C.W. (2011) Genetic diversity of different geographical populations in Octopus variabilis revealed by ISSR analysis. Oceanologia et Limnologia Sinica 42, 868–873. (In Chinese with English abstract).
   Google Scholar
• Hedrick, P.W. (1999) Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53, 313–318. doi: 10.1111/j.1558-5646.1999.tb03767.x
   PubMed Web of Science ®Google Scholar
• Imbrie, J., Boyle, E.A., Clemens, S.C., Duffy, A., Howard, W.R., Kukla, G., Kutzbach, J., Martinson, D.G., Mclntyre, A., Mix, A.C., Molfino, B., Morley, J.J., Peterson, L.C., Pisias, N.G., Prell, W.L., Raymo, M.E., Shackleton, N.J. & Toggweiler, J.R. (1992) On the structure and origin of major glaciation cycles. I. Linear responses to Milankovitch forcing. Paleoceanography 7, 701–738. doi: 10.1029/92PA02253
   Web of Science ®Google Scholar
• Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111–120. doi: 10.1007/BF01731581
   PubMed Web of Science ®Google Scholar
• Kimura, M. (2000) Paleogeography of the Ryukyu Islands. Tropics 10, 5–24. doi: 10.3759/tropics.10.5
   Google Scholar
• Li, H.M., Lv, Z.M., Liu, L.Q., Wu, C.W. & Zhang, J.S. (2013) Genetic structure in 4 Octopus variabilis populations from China coastal waters based on mitochondrial Cytb gene sequence. Oceanologia et Limnologia Sinica 44, 626–631. (In Chinese with English abstract).
   Google Scholar
• Liao, J.X. (2003) Morphology of the mucous pouches and taxonomic study of Cistopus sp. (Cephalopoda: Octopodidae) from Taiwan. M.Sc. Thesis, National Sun-yat Sen University Taiwan.
   Google Scholar
• Librado, P. & Rozas, J. (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451. doi: 10.1093/bioinformatics/btp187
   PubMed Web of Science ®Google Scholar
• Liu, L.W. (2014). Population genetics structure and molecular phylogeography of three oceanic Ommastrephidae species. Ph.D. Dissertation, Shanghai Ocean University. (In Chinese).
   Google Scholar
• Liu, J. X., Gao, T. X., Wu, S.F. & Zhang, Y.P. (2007). Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelonhaematocheilus (Temminck & Schlegel, 1845). Molecular Ecology 16, 275–288. doi: 10.1111/j.1365-294X.2006.03140.x
   PubMed Web of Science ®Google Scholar
• Liu, Z. J. & Cordes, J. F. (2004). DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238, 1–37. doi: 10.1016/j.aquaculture.2004.05.027
   Web of Science ®Google Scholar
• Lv, Z.M., Li, H., Wu, C.W., Fan, Z.J. & Zhang, J.S. (2011) Population genetic structure of Octopus ocellatus in coastal waters of China based on 16S rDNA sequence. Journal of Fishery Sciences of China 18, 29−37. (In Chinese with English abstract). doi: 10.3724/SP.J.1118.2011.00029
   Google Scholar
• Lynch, M. & Crease, T.J. (1990) The analysis of population survey data on DNA sequence variation. Molecular Biology and Evolution 7, 377–394
   PubMed Web of Science ®Google Scholar
• Melis, R., Vacca, L., Cuccu, D., Mereu, M., Cau, A., Follesa, M.C. & Cannas, R. (2018) Genetic population structure and phylogeny of the common octopus Octopus vulgaris Cuvier, 1797 in the Western Mediterranean Sea through nuclear and mitochondrial markers. Hydrobiologia 807, 277–296. doi: 10.1007/s10750-017-3399-5
   Web of Science ®Google Scholar
• Muhammad, F., Lu, Z.M., Liu, L., Du, X., Shafi, M. & Kaleri, H.A. (2018) Genetic structure of Octopus minor around Chinese waters as indicated by nuclear DNA variations (Mollusca, Cephalopoda). Zookeys 775, 1–14. doi: 10.3897/zookeys.775.24258
   Google Scholar
• Nei, M. (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
   Google Scholar
• Ni, G. (2013). Phylogeography of four marine bivalves along China’s coastline, with views into the evolutionary processes and mechanisms. Ph.D. Dissertation, China Ocean University. (In Chinese).
   Google Scholar
• Perdices, A., Sayanda, D. & Coelho, M.M. (2005). Mitochondrial diversity of Opsariichthys bidens (Teleostei, Cyprinidae) in three Chinese drainages. Molecular Phylogenetics and Evolution 37, 920–927. doi: 10.1016/j.ympev.2005.04.020
   PubMed Web of Science ®Google Scholar
• Polzin, T. & Daneshmand, S.V. (2003). On Steiner trees and minimum spanning trees in hypergraphs. Operations Research Letters 31, 12–20. doi: 10.1016/S0167-6377(02)00185-2
   Web of Science ®Google Scholar
• Saitou, N. & Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406–425.
   PubMed Web of Science ®Google Scholar
• Sambrook, J., Fritsch, E.R. & Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbour, NY.
   Google Scholar
• Sreeja, V., Norman, M.D. & Kumar, A.B. (2015) A new species of pouched octopus, Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the southwest coast of India. Zootaxa 4058, 244. doi: 10.11646/zootaxa.4058.2.6
   PubMed Web of Science ®Google Scholar
• Sundaram, S. & Deshmukh, V. D. (2011) Fishery and biology of the octopus, Cistopus indicus (Orbigny, 1840) from Mumbai waters. Journal of the Marine Biological Association of India 53, 145–148.
   Google Scholar
• Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585–595.
   PubMed Web of Science ®Google Scholar
• Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28, 2731–2739. doi: 10.1093/molbev/msr121
   PubMed Web of Science ®Google Scholar
• Thompson, J. D., Gibson T.J, Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25, 4876–4882. doi: 10.1093/nar/25.24.4876
   PubMed Web of Science ®Google Scholar
• Wang, P. & Sun, X. (1994). Last glacial maximum in China: comparison between land and sea. Catena 23, 341–353. doi: 10.1016/0341-8162(94)90077-9
   Web of Science ®Google Scholar
• Yang, Q.L., Lin, X.Z., Zheng, X.D. & Su, Y.Q. (2009) Genetic diversity in populations of Cistopus sp based on the sequences of mitochondrial 16S rRNA and CO1 gene fragments. Oceanologia et Limnologia Sinica 40, 640–646.
   Google Scholar
• Zhang, J.Q., Tang, L.L & Zou, H. (2008) The response to the variety of paleoclimate and sea level in the east China sea after the late Pleistocence. Transactions of Oceanology and Limnology 1, 25–31. (In Chinese with English abstract).
   Google Scholar
• Zheng, X., Lin, X., Lu, C. & Alma, R. (2012) A new species of Cistopus Gray, 1849 (Cephalopoda: Octopodidae) from the East and South China Seas and phylogenetic analysis based on the mitochondrial COI gene. Journal of Natural History 46, 355–368. doi: 10.1080/00222933.2011.639964
   Web of Science ®Google Scholar