Novel microsatellite markers for an endangered freshwater snail, Heleobia atacamensis (Caenogastropoda: Cochliopidae), from the Atacama Saltpan

References

• Bailie, D.A., Fletcher, H. & Prodöhl, P.A. (2010) High incidence of cryptic repeated elements in microsatellite flanking regions of Galatheid genomes and its practical implications for molecular marker development. Journal of Crustacean Biology 30, 664–672. doi: 10.1651/09-3252.1
   Web of Science ®Google Scholar
• Biese, W. (1944) Revisión de los moluscos terrestres de agua dulce provistos de concha de Chile. Parte I. Boletín del Museo de Historia Natural 22, 169–190.
   Google Scholar
• Biese, W. (1947) Revisión de los moluscos terrestres de agua dulce provistos de concha de Chile. Parte II. Boletín del Museo de Historia Natural 22, 63–77.
   Google Scholar
• Cazzaniga, N.J. (2011) Heleobia Stimpson, 1865: Taxonomía. In: Cazzaniga, N.J. (Ed.), Amici Molluscarum, Número Especial, 12–17.
   Google Scholar
• Collado, G.A. (2015) A new freshwater snail (Caenogastropoda: Cochliopidae) from the Atacama Desert, Northern Chile. Zootaxa 3925, 445–449. doi: 10.11646/zootaxa.3925.3.9
   PubMed Web of Science ®Google Scholar
• Collado, G.A., Méndez, M.A., Letelier, S.L., Veliz, D. & Sabando, M.C. (2011) Morfología peniana y taxonomía del género Heleobia Stimpson, 1865 en Chile junto a una revisión de los ejemplares tipo del Museo Nacional de Historia Natural de Chile. Amici Molluscarum, Número Especial, 49–58.
   Google Scholar
• Collado, G.A., Valladares, M.A. & Méndez, M.A. (2013) Hidden diversity in spring snails from the Andean Altiplano, the second highest plateau on Earth, and the Atacama Desert, the driest place in the world. Zoological Studies 52, 50. doi: 10.1186/1810-522X-52-50
   Web of Science ®Google Scholar
• Collado, G.A., Valladares, M.A. & Méndez, M.A. (2016a) Unravelling cryptic species of freshwater snails (Caenogastropoda, Truncatelloidea) in the Loa River basin, Atacama Desert. Systematics and Biodiversity 14, 417–429. doi: 10.1080/14772000.2016.1153526
   Web of Science ®Google Scholar
• Collado, G.A., Valladares, M.A. & Méndez, M.A. (2016b) A new species of Heleobia (Caenogastropoda: Cochliopidae) from the Chilean Altiplano. Zootaxa 4137, 277–280. doi: 10.11646/zootaxa.4137.2.8
   PubMed Web of Science ®Google Scholar
• Collado, G.A., Vidal, M.A., Aguayo, K.P., Méndez, M.A., Valladares, M.A., Cabrera, F.J., Pastenes, L., Gutiérrez Gregoric, D.E. & Puillandre, N. (2019) Morphological and molecular analysis of cryptic native and invasive freshwater snails in Chile. Scientific Reports 9, 7846. doi: 10.1038/s41598-019-41279-x
   PubMed Web of Science ®Google Scholar
• Dorador, C., Fink, P., Hengst, M., Icaza, G., Villalobos, A.S., Vejar, D., Meneses, D., Zadjelovic, V., Burmann, L., Moelzner, J. & Harrod, C. (2018) Microbial community composition and trophic role along a marked salinity gradient in Laguna Puilar, Salar de Atacama, Chile. Antonie van Leeuwenhoek 111, 1361–1374. doi: 10.1007/s10482-018-1091-z
   PubMed Web of Science ®Google Scholar
• Goudet, J. (2003) FSTAT (ver. 2.9.4), a program to estimate and test population genetics parameters. Available from http://www.unil.ch/izea/softwares/fstat.html.
   Google Scholar
• Haas, F. (1955) XVII. Mollusca: Gastropoda. Transactions of the Linnean Society of London 1, 275–308.
   Google Scholar
• Hershler, R. & Thompson, F.G. (1992) A Review of the Aquatic Gastropod Subfamily Cochliopinae (Prosobranchia: Hydrobiidae). Malacological Review, Supplement 5, 1–140.
   Google Scholar
• Kalinowski, S.T., Taper, M.L. & Marshall, T.C. (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology 16, 1099–1106. doi: 10.1111/j.1365-294X.2007.03089.x
   PubMed Web of Science ®Google Scholar
• Kroll, O., Hershler, R., Albrecht, C., Terrazas, E.M., Apaza, R., Fuentealba, C., Wolff, C. & Wilke, T. (2012) The endemic gastropod fauna of Lake Titicaca: correlation between molecular evolution and hydrographic history. Ecology and Evolution 2, 1517–1530. doi: 10.1002/ece3.280
   PubMed Web of Science ®Google Scholar
• Martin, S.M. & Díaz, A.C. (2016) Histology and gametogenesis in Heleobia piscium (Cochliopidae) from the Multiple Use Reserve “Isla Martín García,” Buenos Aires, Argentina. PeerJ 4, e2548. doi: 10.7717/peerj.2548
   PubMed Web of Science ®Google Scholar
• McInerney, C.E., Allcock, A.L., Johnson, M.P., Bailie, D.A. & Prodöhl, P.A. (2011) Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs. Heredity 106, 78–87. doi: 10.1038/hdy.2010.36
   PubMed Web of Science ®Google Scholar
• Meglécz, E., Anderson, S.J., Bourguet, D., Butcher, R., Caldas, A., Cassel-Lundhagen, A., d'Acier, A.C., Dawson, D.A., Faure, N., Fauvelot, C., Franck, P., Harper, G., Keyghobadi, N., Kluetsch, C., Muthulakshmi, M., Nagaraju, J., Patt, A., Péténian, F., Silvain, J.F. & Wilcock, H.R. (2007) Microsatellite flanking region similarities among different loci within insect species. Insect Molecular Biology 16, 175–185. doi: 10.1111/j.1365-2583.2006.00713.x
   PubMed Web of Science ®Google Scholar
• Ministerio del Medio Ambiente (2014) Inventario nacional de especies de Chile: Heleobia atacamensis (Philippi, 1860). http://www.mma.gob.cl/clasificacionespecies/fichas10proceso/fichas_10_pac/Heleobia_atacamensis_10RCE_03_PAC.pdf. Accessed 10 March 2020.
   Google Scholar
• Pastorino, G. & Darrigan, G. (2011) Heleobia atacamensis. The IUCN Red List of Threatened Species 2011: e.T189150A8693243. https://dx.doi.org/10.2305/IUCN.UK.2011-2.RLTS.T189150A8693243.en. Downloaded on 30 March 2020.
   Google Scholar
• Rozen, S. & Skaletsky, H. (2000) Primer3 on the WWW for general users and for biologist programmers. In: Misener, S., Krawtz, S.A. (Eds.), Bioinformatics Methods and Protocols. Methods in Molecular Biology, vol 132. Humana Press, Totowa, NJ. pp. 365–386.
   Google Scholar
• Schmieder, R. & Edwards, R. (2011) Quality control and preprocessing of metagenomic datasets. Bioinformatics 27, 863–864. doi: 10.1093/bioinformatics/btr026
   PubMed Web of Science ®Google Scholar
• Schuelke, M. (2000) An economic method for the fluorescent labelling of PCR fragments. Nature Biotechnology 18, 233–234. doi: 10.1038/72708
   PubMed Web of Science ®Google Scholar
• Stuardo, J. & Vega, R. (1985) Synopsis of the land Mollusca of Chile: with remarks on distribution. Studies on Neotropical Fauna and Environment 20, 125–146. doi: 10.1080/01650528509360682
   Web of Science ®Google Scholar
• Tero, N., Neumeier, H., Gudavalli, R. & Schlötterer, C. (2006) Silene tatarica microsatellites are frequently located in repetitive DNA. Journal of Evolutionary Biology 19, 1612–1619. doi: 10.1111/j.1420-9101.2006.01118.x
   PubMed Web of Science ®Google Scholar
• U.S. Geological Survey. (2020) Mineral commodity summaries 2020. In: U.S. Geological Survey, 200p. https://doi.org/10.3133/70202434
   Google Scholar
• Valladares, M.A., Méndez, M.A. & Collado, G.A. (2018) Influenced but not determined by historical events: genetic, demographic and morphological differentiation in Heleobia ascotanensis from the Chilean Altiplano. PeerJ 6, e5802. doi: 10.7717/peerj.5802
   PubMed Web of Science ®Google Scholar
• van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M. & Shipley, P. (2004) MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4, 535–538. doi: 10.1111/j.1471-8286.2004.00684.x
   Web of Science ®Google Scholar
• Weyrauch, W. (1963) Cuatro nuevas especies de Hydrobiidae de Argentina y Perú. Acta Zoológica Lilloana 19, 243–259.
   Google Scholar
• Winnepenninckx, B., Backeljau, T. & De Wachter, R. (1993) Extraction of high molecular weight DNA from molluscs. Trends in Genetics 9, 407. doi: 10.1016/0168-9525(93)90102-N
   PubMed Web of Science ®Google Scholar