765
Views
0
CrossRef citations to date
0
Altmetric
Research Article

Circulating tRNA-derived fragments are decreased in patients with rheumatoid arthritis and increased in patients with psoriatic arthritis

, , , , &
Pages 90-99 | Received 04 Apr 2023, Accepted 10 Feb 2024, Published online: 27 Feb 2024

References

  • Agris PF. 2004. Decoding the genome: a modified view. Nucleic Acids Res. 32(1):223–238. doi: 10.1093/nar/gkh185
  • Alexandrov A, Chernyakov I, Gu W, Hiley SL, Hughes TR, Grayhack EJ, Phizicky EM. 2006. Rapid tRNA decay can result from lack of nonessential modifications. Mol Cell. 21(1):87–96. doi: 10.1016/j.molcel.2005.10.036
  • Blanco S, Dietmann S, Flores JV, Hussain S, Kutter C, Humphreys P, Lukk M, Lombard P, Treps L, Popis M, et al. 2014. Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders. EMBO J. 33(18):2020–2039. doi: 10.15252/embj.201489282
  • Brzezicha B, Schmidt M, Makalowska I, Jarmolowski A, Pienkowska J, Szweykowska-Kulinska Z. 2006. Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the pre-tRNA Leu (CAA). Nucleic Acids Res. 34(20):6034–6043. doi: 10.1093/nar/gkl765
  • Chiou NT, Kageyama R, Ansel KM. 2018. Selective export into extracellular vesicles and function of tRNA fragments during T cell activation. Cell Rep. 25(12):3356–3370.e4. doi: 10.1016/j.celrep.2018.11.073
  • Conigliaro P, Triggianese P, Perricone C, Chimenti MS, Di Muzio G, Ballanti E, Guarino MD, Kroegler B, Gigliucci G, Grelli S, et al. 2014. Restoration of peripheral blood natural killer and B cell levels in patients affected by rheumatoid and psoriatic arthritis during etanercept treatment. Clin Exp Immunol. 177(1):234–243. doi: 10.1111/cei.12335
  • Cosentino C, Toivonen S, Diaz Villamil E, Atta M, Ravanat JL, Demine S, Schiavo AA, Pachera N, Deglasse JP, Jonas JC, et al. 2018. Pancreatic β-cell tRNA hypomethylation and fragmentation link TRMT10A deficiency with diabetes. Nucleic Acids Res. 46(19):10302–10318. doi: 10.1093/nar/gky839
  • Datta S, Kundu S, Ghosh P, De S, Ghosh A, Chatterjee M. 2014. Correlation of oxidant status with oxidative tissue damage in patients with rheumatoid arthritis. Clin Rheumatol. 33(11):1557–1564. doi: 10.1007/s10067-014-2597-z
  • Dhahbi JM, Spindler SR, Atamna H, Boffelli D, Mote P, Martin DI. 2013. 5’-YRNA fragments derived by processing of transcripts from specific YRNA genes and pseudogenes are abundant in human serum and plasma. Physiol Genomics. 45(21):990–998. doi: 10.1152/physiolgenomics.00129.2013
  • Dhahbi JM, Spindler SR, Atamna H, Yamakawa A, Boffelli D, Mote P, Martin DIK. 2013. 5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction. BMC Genomics. 14(1):298. doi: 10.1186/1471-2164-14-298
  • Dunaeva M, Blom J, Thurlings R, Pruijn GJM. 2018. Circulating serum miR-223-3p and miR-16-5p as possible biomarkers of early rheumatoid arthritis. Clin Exp Immunol. 193(3):376–385. doi: 10.1111/cei.13156
  • Durdevic Z, Mobin MB, Hanna K, Lyko F, Schaefer M. 2013. The RNA methyltransferase Dnmt2 is required for efficient Dicer-2-dependent siRNA pathway activity in Drosophila. Cell Rep. 4(5):931–937. doi: 10.1016/j.celrep.2013.07.046
  • Flores JV, Cordero-Espinoza L, Oeztuerk-Winder F, Andersson-Rolf A, Selmi T, Blanco S, Tailor J, Dietmann S, Frye M. 2017. Cytosine-5 RNA methylation regulates neural stem cell differentiation and motility. Stem Cell Rep. 8(1):112–124. doi: 10.1016/j.stemcr.2016.11.014
  • Ishibashi T. 2013. Molecular hydrogen: new antioxidant and anti-inflammatory therapy for rheumatoid arthritis and related diseases. Curr Pharm Des. 19(35):6375–6381. doi: 10.2174/13816128113199990507
  • Lioté F, Champy R, Moenner M, Boval-Boizard B, Badet J. 2003. Elevated angiogenin levels in synovial fluid from patients with inflammatory arthritis and secretion of angiogenin by cultured synovial fibroblasts. Clin Exp Immunol. 132(1):163–168. doi: 10.1046/j.1365-2249.2003.02117.x
  • Lobb RJ, Becker M, Wen SW, Wong CS, Wiegmans AP, Leimgruber A, Moller A. 2015. Optimized exosome isolation protocol for cell culture supernatant and human plasma. J Extracell Vesicles. 4:27031. doi: 10.3402/jev.v4.27031
  • Lübbers J, van Beers-Tas MH, Vosslamber S, Turk SA, de Ridder S, Mantel E, Wesseling JG, Reijm M, van Hoogstraten IM, Bijlsma JW, et al. 2016. Changes in peripheral blood lymphocyte subsets during arthritis development in arthralgia patients. Arthritis Res Ther. 18(1):205. doi: 10.1186/s13075-016-1102-2
  • Magee R, Rigoutsos I. 2020. On the expanding roles of tRNA fragments in modulating cell behavior. Nucleic Acids Res. 48(17):9433–9448. doi: 10.1093/nar/gkaa657
  • Merola JF, Espinoza LR, Fleischmann R. 2018. Distinguishing rheumatoid arthritis from psoriatic arthritis. RMD Open. 4(2):e000656. doi: 10.1136/rmdopen-2018-000656
  • Moran-Moguel MC, Petarra-del Rio S, Mayorquin-Galvan EE, Zavala-Cerna MG. 2018. Rheumatoid arthritis and miRNAs: a critical review through a functional view. J Immunol Res. 2018:2474529–16. doi: 10.1155/2018/2474529
  • Nakae S, Nambu A, Sudo K, Iwakura Y. 2003. Suppression of immune induction of collagen-induced arthritis in IL-17-deficient mice. J Immunol. 171(11):6173–6177. doi: 10.4049/jimmunol.171.11.6173
  • Newman AM, Liu CL, Green MR, Gentles AJ, Feng W, Xu Y, Hoang CD, Diehn M, Alizadeh AA. 2015. Robust enumeration of cell subsets from tissue expression profiles. Nat Methods. 12(5):453–457. doi: 10.1038/nmeth.3337
  • Pereira M, Ribeiro DR, Pinheiro MM, Ferreira M, Kellner S, Soares AR. 2021. m5U54 tRNA hypomodification by lack of TRMT2A drives the generation of tRNA-derived small RNAs. Int J Mol Sci. 22(6):2941. doi: 10.3390/ijms22062941
  • Pliatsika V, Loher P, Magee R, Telonis AG, Londin E, Shigematsu M, Kirino Y, Rigoutsos I. 2018. MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all the Cancer Genome Atlas projects. Nucleic Acids Res. 46(D1):D152–D159. doi: 10.1093/nar/gkx1075
  • Sellam J, Proulle V, Jüngel A, Ittah M, Miceli Richard C, Gottenberg JE, Toti F, Benessiano J, Gay S, Freyssinet JM, et al. 2009. Increased levels of circulating microparticles in primary Sjögren’s syndrome, systemic lupus erythematosus and rheumatoid arthritis and relation with disease activity. Arthritis Res Ther. 11(5):R156. doi: 10.1186/ar2833
  • Sharbati-Tehrani S, Kutz-Lohroff B, Bergbauer R, Scholven J, Einspanier R. 2008. miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample. BMC Mol Biol. 9:34. doi: 10.1186/1471-2199-9-34
  • Shigematsu M, Honda S, Kirino Y. 2014. Transfer RNA as a source of small functional RNA. J Mol Biol Mol Imaging. 1:8. https://austinpublishinggroup.com/molecular-biology/fulltext/jmbmi-v1-id1007.php
  • Skriner K, Adolph K, Jungblut PR, Burmester R. 2006. Association of citrullinated proteins with synovial exosomes. Arthritis Rheum. 54(12):3809–3814. doi: 10.1002/art.22276
  • Thompson DM, Lu C, Green PJ, Parker R. 2008. tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA. 14(10):2095–2103. doi: 10.1261/rna.1232808
  • Tosar JP, Gámbaro F, Darré L, Pantano S, Westhof E, Cayota A. 2018. Dimerization confers increased stability to nucleases in 5’ halves from glycine and glutamic acid tRNAs. Nucleic Acids Res. 46(17):9081–9093. doi: 10.1093/nar/gky495
  • Veale DJ, Fearon U. 2015. What makes psoriatic and rheumatoid arthritis so different? RMD Open. 1(1):e000025–e000025. doi: 10.1136/rmdopen-2014-000025
  • Winek K, Lobentanzer S, Nadorp B, Dubnov S, Dames C, Jagdmann S, Moshitzky G, Hotter B, Meisel C, Greenberg DS, et al. 2020. Transfer RNA fragments replace microRNA regulators of the cholinergic poststroke immune blockade. Proc Natl Acad Sci USA. 117(51):32606–32616. doi: 10.1073/pnas.2013542117
  • Yamasaki S, Ivanov P, Hu GF, Anderson P. 2009. Angiogenin cleaves tRNA and promotes stress-induced translational repression. J Cell Biol. 185(1):35–42. doi: 10.1083/jcb.200811106
  • Yu M, Lu B, Zhang J, Ding J, Liu P, Lu Y. 2020. tRNA-derived RNA fragments in cancer: current status and future perspectives. J Hematol Oncol. 13(1):121. doi: 10.1186/s13045-020-00955-6
  • Zhu L, Liu X, Pu W, Peng Y. 2018. tRNA-derived small non-coding RNAs in human disease. Cancer Lett. 419:1–7. doi: 10.1016/j.canlet.2018.01.015