JC virus VP1 loop-specific polymorphisms are associated with favorable prognosis for progressive multifocal leukoencephalopathy

References

• Albrecht H, Hoffmann C, Degen O, Stoehr A, Plettenberg A, Mertenskotter T, Eggers C, Stellbrink HJ. Highly active antiretroviral therapy significantly improves the prognosis of patients with HIV-associated progressive multifocal leukoencephalopathy. AIDS 1998; 12: 1149–1154
   PubMed Web of Science ®Google Scholar
• Antinori A, Cingolani A, Lorenzini P, Giancola ML, Uccella I, Bossolasco S, Grisetti S, Moretti F, Vigo B, Bongiovanni M, Del Grosso B, Arcidiacono MI, Fibbia GC, Mena M, Finazzi MG, Guaraldi G, Ammassari A, d'Arminio Monforte A, Cinque P, De Luca A; Italian Registry Investigative Neuro AIDS Study Group 2003. Clinical epidemiology and survival of progressive multifocal leukoencephalopathy in the era of highly active antiretroviral therapy: data from the Italian Registry Investigative Neuro AIDS (IRINA). J NeuroVirol 9(Suppl 1): 47–53.
   PubMedGoogle Scholar
• Ault GS, Stoner GL. Human polyomavirus JC promoter/enhancer rearrangement patterns from progressive multifocal leukoencephalopathy brain are unique derivatives of a single archetypal structure. J Gen Virol 1993; 74: 1499–1507
   PubMed Web of Science ®Google Scholar
• Berger JR, Pall L, Lanska D, Whiteman M. Progressive multifocal leukoencephalopathy in patients with HIV infection. J Neurovirol 1998; 4: 59–68
   PubMed Web of Science ®Google Scholar
• Berger JR, Kaszovitz B, Donovan Post MJ, Dickinson G. Progressive multifocal leukoencephalopathy associated with human immunodeficiency virus infection. Ann Intern Med 1987; 107: 78–87
   PubMed Web of Science ®Google Scholar
• Brooks BR, Walker DL. Progressive multifocal leukoencephalopathy. Neurol Clin 1984; 2: 299–313
   PubMed Web of Science ®Google Scholar
• Chang D, Liou ZM, Ou WC, Wang KZ, Wang M, Fung CY, Tsai RT. Production of the antigen and the antibody of the JC virus major capsid protein VP1. J Virol Methods 1996; 59: 177–187
   PubMedGoogle Scholar
• Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 2003; 31: 3497–3500
   PubMed Web of Science ®Google Scholar
• Cinque P, Casari S, Bertelli D. Progressive multifocal leukoencephalopathy, HIV, and highly active antiretroviral therapy. N Engl J Med 1998; 339: 848–849
   PubMed Web of Science ®Google Scholar
• Clifford DB, Yiannoutsos C, Glicksman M, Simpson DM, Singer EJ, Piliero PJ, Marra CM, Francis GS, McArthur JC, Tyler KL, Tselis AC, Hyslop NE. HAART improves prognosis in HIV-associated progressive multifocal leukoencephalopathy. Neurology 1999; 52: 623–625
   PubMed Web of Science ®Google Scholar
• Delbue S, Pagani E, Guerini FR, Agliardi C, Mancuso R, Borghi E, Rossi F, Boldorini R, Veggiani C, Car PG, Ferrante P. Distribution, characterization and significance of polyomavirus genomic sequences in tumors of the brain and its covering. J Med Virol 2005; 77: 447–454
   Google Scholar
• Delbue S, Sotgiu G, Fumagalli D, Valli M, Borghi E, Mancuso R, Marchioni E, Maserati R, Ferrante P. A case of a PML patient with four different JC virus TCR rearrangements in CSF, blood, serum and urine. J NeuroVirol 2005; 11: 51–57
   PubMed Web of Science ®Google Scholar
• Dugan A, Gasparovic ML, Tsomaia N, Mierke DF, O'Hara B, Manley K, Atwood WJ. Identification of amino acid residues in BK virus VP1 critical for viability and growth. J Virol 2007; 81: 11798–11808
   Google Scholar
• Eckert KA, Kunkel TA. High fidelity DNA synthesis by the Thermus aquaticus DNA polymerase. Nucleic Acids Res 1990; 18: 3739–3744
   PubMed Web of Science ®Google Scholar
• Frisque RJ, Bream GL, Cannella MT. Human polyomavirus JC virus genome. J Virol 1984; 51: 458–469
   PubMed Web of Science ®Google Scholar
• Gee GV, Tsomaia N, Mierke DF, Atwood WJ. Modeling a sialic acid binding pocket in the external loops of JC virus VP1. J Biol Chem 2004; 279: 49172–49176
   PubMed Web of Science ®Google Scholar
• Liddington RC, Yan Y, Moulai J, Sahli R, Benjamin TL, Harrison SC. Structure of simian virus 40 at 3.8-A resolution. Nature 1991; 354: 278–284
   PubMed Web of Science ®Google Scholar
• Loeber G, Dories K. DNA rearrangements in organ-specific variants of polyomavirus JC strain GS. J Virol 1998; 62: 1730–1735
   Google Scholar
• Stehle T, Gamblin SJ, Yan Y, Harrison SC. The structure of simian virus 40 refined at 3.1 A resolution. Structure 1996; 4: 165–182
   PubMed Web of Science ®Google Scholar
• Walker DL, Padgett BL. The epidemiology of human polyomaviruses. Polyomaviruses and human neurological disease, JL Sever, D Madden. Alan R. Liss, New York 1983; 99–106
   Google Scholar
• Yogo Y, Kitamura T, Sugimoto C, Ueki T, Aso Y, Hara K, Taguchi F. Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J Virol 1990; 64: 3139–3143
   PubMed Web of Science ®Google Scholar
• Zheng HY, Takasaka T, Noda K, Kanazawa A, Mori H, Kabuki T, Joh K, Oh-ishi T, Ikegaya H, Nagashima K, Hall WW, Kitamura T, Yogo Y. New sequence polymorphisms in the outer loops of the JC polyomavirus major capsid protein (VP1) possibly associated with progressive multifocal leukoencephalopathy. J Gen Virol 2005a; 86: 2035–2045
   Google Scholar
• Zheng HY, Ikegaya H, Takasaka T, Matsushima-Ohno T, Sakurai M, Kanazawa I, Kishida S, Nagashima K, Kitamura T, Yogo Y. Characterization of the VP1 loop mutations widespread among JC polyomavirus isolates associated with progressive multifocal leukoencephalopathy. Biochem Biophys Res Commun 2005b; 333: 996–1002
   Google Scholar