A high efficiency single molecule localisation algorithm with sub-pixel resolution based on fluorescence images

References

• Wang, Y. M., Zareh, S., DeSantis, M., DeCenzo, S., Kessler, J. and Kovacs, A. Single-image molecular analysis for accelerated fluorescence imaging. Biophys. J., 2011, 100, 476a. doi: 10.1016/j.bpj.2010.12.2789
   Google Scholar
• Schmidt, T., Schütz, G. J., Baumgartner, W., Gruber, H. J. and Schindler, H. Imaging of single molecule diffusion. Proc. Natl. Acad. Sci. USA, 1996, 93, 2926–2929. doi: 10.1073/pnas.93.7.2926
   PubMed Web of Science ®Google Scholar
• Yildiz, A. and Selvin, P. R. Fluorescence imaging with one nanometer accuracy: application to molecular motors. Acc. Chem. Res., 2005, 38, 574–582. doi: 10.1021/ar040136s
   PubMed Web of Science ®Google Scholar
• Vukojevic, V., Heidkamp, M., Ming, Y., Johansson, B., Terenius, L. and Rigler, R. Quantitative single-molecule imaging by confocal laser scanning microscopy. Proc. Natl. Acad. Sci. USA, 2008, 105, 18176–18181. doi: 10.1073/pnas.0809250105
   PubMed Web of Science ®Google Scholar
• Stelzer, E. H. K. Contrast, resolution, pixelation, dynamic range and signal-to-noise ratio: fundamental limits to resolution in fluorescence light microscopy. J. Microsc – Oxford, 1998, 189, 15–24. doi: 10.1046/j.1365-2818.1998.00290.x
   Web of Science ®Google Scholar
• Bobroff, N. Position measurement with a resolution and noise-limited instrument. Rev. Sci. Instrum., 1986, 57, 1152–1157. doi: 10.1063/1.1138619
   Web of Science ®Google Scholar
• Gelles, J., Schnapp, B. J. and Sheetz, M. P. Tracking kinesin-driven movements with nanometre-scale precision. Nature, 1988, 331, 450–453. doi: 10.1038/331450a0
   PubMed Web of Science ®Google Scholar
• Anderson, C. M. Georgiou, G. N., Morrison, I. E. G., Stevenson, G. V. W. and Cherry, R. J. Tracking of cell-surface receptors by fluorescence digital imaging microscopy using a charge-coupled device camera-low-density-lipoprotein and influenza-virus receptor mobility at 4-Degrees-C. J. Cell Sci., 1992, 101, 415–425.
   PubMed Web of Science ®Google Scholar
• Yildiz, A., Forkey, J. N., McKinney, S. A., Ha, T., Goldman, Y. E. and Selvin, P. R. Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science, 2003, 300, 2061–2065. doi: 10.1126/science.1084398
   PubMed Web of Science ®Google Scholar
• Lee, G. M., Ishihara, A. and Jacobson, K. A. Direct observation of Brownian-motion of lipids in a membrane. Proc. Natl. Acad. Sci. USA., 1991, 88, 6274–6278. doi: 10.1073/pnas.88.14.6274
   PubMed Web of Science ®Google Scholar
• Ghosh, R. N. and Webb, W. W. Automated detection and tracking of individual and clustered cell-surface low-density-lipoprotein receptor molecules. Biophys. J., 1994, 66, 1301–1318. doi: 10.1016/S0006-3495(94)80939-7
   PubMed Web of Science ®Google Scholar
• Feng, Y., Goree, J. and Liu, B. Accurate particle position measurement from images. Rev. Sci. Instrum., 2007, 78, 053704–053704. doi: 10.1063/1.2735920
   Google Scholar
• Cheezum, M. K. Walker, W. F. and Guilford, W. H. Quantitative comparison of algorithms for tracking single fluorescent particles. Biophys. J., 2001, 81, 2378–2388. doi: 10.1016/S0006-3495(01)75884-5
   PubMed Web of Science ®Google Scholar
• Thompson, R. E., Larson, D. R. and Webb, W. W. Precise nanometer localization analysis for individual fluorescent probes. Biophys. J., 2002, 82, 2775–2783. doi: 10.1016/S0006-3495(02)75618-X
   PubMed Web of Science ®Google Scholar
• Rogers, S. S., Waigh, T. A., Zhao, X. B. and Lu, J. R. Precise particle tracking against a complicated background: polynomial fitting with Gaussian weight. Phys. Biol., 2007, 4, 220–227. doi: 10.1088/1478-3975/4/3/008
   PubMed Web of Science ®Google Scholar
• Andersson, S. B. Localization of a fluorescent source without numerical fitting. Opt. Express, 2008, 16, 18714–18724. doi: 10.1364/OE.16.018714
   PubMed Web of Science ®Google Scholar
• Berglund, A. J., McMahon, M. D., McClelland, J. J. and Liddle, J. A. Fast, bias-free algorithm for tracking single particles with variable size and shape. Opt. Express, 2008, 16, 14064–14075. doi: 10.1364/OE.16.014064
   PubMed Web of Science ®Google Scholar
• Crocker, J. C. and Grier, D. G. Methods of digital video microscopy for colloidal studies. J. Colloid Interf. Sci., 1996, 179, 298–310. doi: 10.1006/jcis.1996.0217
   Web of Science ®Google Scholar
• Sbalzarini, I. F. and Koumoutsakos, P. Feature point tracking and trajectory analysis for video imaging in cell biology. J. Struct. Biol., 2005, 151, 182–195. doi: 10.1016/j.jsb.2005.06.002
   PubMed Web of Science ®Google Scholar
• Schütz, G. J., Schindler, H. and Schmidt, T. Single-molecule microscopy on model membranes reveals anomalous diffusion. Biophys. J., 1997, 73, 1073–1080. doi: 10.1016/S0006-3495(97)78139-6
   PubMed Web of Science ®Google Scholar
• Ober, R. J., Ram, S. and Ward, E. S. Localization accuracy in single-molecule microscopy. Biophys. J., 2004, 86, 1185–1200. doi: 10.1016/S0006-3495(04)74193-4
   PubMed Web of Science ®Google Scholar