43
Views
5
CrossRef citations to date
0
Altmetric
Original Articles

Development of SSR markers based on a survey of genomic sequences and their molecular analysis in banana (Musa spp.)

, , , , , & show all
Pages 84-88 | Accepted 21 Aug 2011, Published online: 07 Nov 2015

References

  • Arias, P., Dankers, C., Liu, P. and Pilkauskas, P. (2003). The World Banana Economy 1985 – 2002. (http://www.fao.org/docrep/007/y5102e/y5102e00.htm)
  • Buhariwalla,H.K.,Jarret, R. L., Jayashree, B., Crouch,J.H. and Ortiz, R. (2005). Isolation and characterization of microsatellite markers from Musa balbisiana. Molecular Ecology Notes, 5, 327–330.
  • Creste, S., Tulmann Neto, A., De Oliveira-Silva, S and Figueira, A. (2003) Genetic characterization of banana cultivars (Musa spp.) from Brazil using microsatellite markers. Euphytica, 132, 259–268
  • Crouch, H. K., Crouch, J. H., Jarret, R. L., Cregan, P. B. and Ortiz, R. (1998). Segregation at microsatellite loci in haploid and diploid gametes of Musa. Crop Science, 38, 211–217.
  • Crouch, J. H., Crouch, H. K., Tenkouano, A. and Ortiz, R. (1999). VNTR-based diversity analysis of 2x and 4x full-sib Musa hybrids. Electronic Journal of Biotechnology, 2, 99–108.
  • D’Hont, A., Paget-Goy, A., Escoute, J. and Carreel, F. (2000). The interspecific genome structure of cultivated banana, Musa spp., revealed by genomic DNA in situ hybridization. Theoretical and Applied Genetics, 100, 177–183.
  • Grapin,A., Noyer, J. L., Carreel, F., Dambier, D., Baurens,F.C., Lanaud, C. and Lagoda, P. J. L. (1998). Diploid Musa acuminata genetic diversity assayed with sequence-tagged microsatellite sites. Electrophoresis, 19, 1374–1380.
  • Gupta, P. K. and Varshney, R. K. (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica, 113, 163–185.
  • Hippolyte, I., Bakry, F., Seguin, M., Gardes, L., Rivallan, R., Risterucci, A., Jenny, C., Perrier, X., Carreel, F., Argout, X., Piffanelli, P., Khan, I., Miller, R. N., Pappas, G. J., Mbeguie-A-Mbeguie, D., Matsumoto, T., Bernardinis,V. D., Huttner, E., Kilian, A., Baurens, F., D’Hont, A., Cote, F., Courtois, B. and Glaszman, J. (2010). A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. BMC Plant Biology, 10, 65.
  • Kalinowski, T. C., Taper, M. L. and Marshall, T. C. (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology, 16, 1099-1106.
  • Lipman, D. J. and Pearson, W. R. (1985). Rapid and sensitive protein similarity searches. Science, 227, 1435–1441.
  • Morgante, M., Hanafey, M. and Powell, W. (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature Genetics, 30, 194–200.
  • Ning, S. P., Xu, L-B., Lu, Y., Huang, B. Z. and Ge, X.J., (2007). Genome composition and genetic diversity of Musa germplasm from China revealed by PCR-RFLP and SSR markers. Scientia Horticulturae, 114, 281–288.
  • Oriero, C. E., Odunola, O. A., Lokko, Y. and Ingelbrecht, I. (2006). Analysis of B-genome-derived simple sequence repeat (SSR) markers in Musa sp. African Journal of Biotechnology, 5, 126–128.
  • Osuji, J., Harrisson, G., Crouch, J. and Heslop-Harrison, J. S. (1997). Identification of the genomic constitution of Musa L. lines (bananas, plantains and hybrids) using molecular cytogenetics. Annals of Botany, 80, 787–793.
  • Pillay, M., Nwakanma, D. C. and Tenkouano, A. (2000). Identification of RAPD markers linked to A and B genome sequences in Musa L. Genome, 43, 763–767.
  • Ravishankar, K. V., Dinesh, M. R. and Anand, L. (2000). Assessment of genetic relatedness among mango cultivars of India using RAPD markers. Journal of Horticultural Science & Biotechnology, 75, 198–201.
  • Rekha, A., Ravishankar, K. V., Anand, L. and Hiremath, S. C. (2001). Genetic and genomic diversity in banana (Musa species and cultivars) based on D2 analysis and RAPD markers. Infomusa, 10, 29–34.
  • Ribaut,J.M.,Hu, X., Hoisington, D. and Gonzalez-De-Leon,D. (1997). Use of STSs and SSRs as rapid and reliable preselection tools in a marker-assisted selection-backcross scheme. Plant Molecular Biology Reporter, 15, 154–162.
  • Rohlf, F. J. (1990). NTSYS-pc Manual. Exeter Software, Setauket, New York, NY, USA. 76 pp.
  • Rozen, S., and Skaletsky, H. J. (2000). Primer 3 on the WWW for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology. (Krawetz, S. and Misener, S., Eds.). Humana Press, Totowa, NJ, USA. 365–386.
  • Simmonds, N. W. and Shepherd, K. (1955). The taxonomy and origin of the cultivated bananas. Journal of the Linnean Society of London (Botany), 55, 302–312.
  • Smith, K., Diggle, M. A., and Clarke, S. C. (2004). Automation of a fluorescence-based multiplex PCR for the laboratory confirmation of common bacterial pathogens. Journal of Medical Microbiology, 53, 115–117.
  • Stover, R. H., and Simmonds, N. W. (1987). Bananas. 3rd Edition. Longman, London, UK. 468 pp.
  • Varshney, R. K., Graner, A. and Sorrells, M. E. (2005). Genic microsatellite markers: their characteristics, development and application to plant breeding and genetics. Trends in Biotechnology, 23, 48–55.
  • Weber, J. L. and May, P. E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. American Journal of Human Genetics, 44, 388-396.
  • Yap, I. and Nelson, R. J. (1996). WINBOOT: A program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendograms. IRRI Discussion Paper Series. No. 14. International Rice Research Institute, Manila, Philippines. 32 pp.
  • Yi, G., Lee,J.M.,Lee, S., Choi, S. and Kim, B. (2006). Exploitation of pepper EST–SSRs and SSR-based linkage map. Theoretical and Applied Genetics, 114, 113–130.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.