28
Views
1
CrossRef citations to date
0
Altmetric
Original Articles

Phylogenetic relationships among Iranian and Spanish date palms (Phoenix dactylifera L.) revealed by microsatellite markers

, , , &
Pages 115-120 | Accepted 11 Oct 2013, Published online: 07 Nov 2015

References

  • Ahmad, T. A. and AL-Qaradwi, A. Y. (2009). Molecular phylogeny of Qatari date palm genotypes using simple sequence repeats markers. Biotechnology Journal, 8, 126–131.
  • Akkak, A., Scariot, V., Torello Marinoni, D., Boccacci, P., BEL-Tramo, C. and Botta, R. (2009). Development and evaluation of microsatellite markers in Phoenix dactylifera L. and their transferability to other Phoenix species. Biologia Plantarum, 53, 164–166.
  • AL-Khalifah, N. S. and Askari, E. (2003). Molecular phylogeny of date palm (Phoenix dactylifera L.) cultivars from Saudi Arabia by DNA fingerprinting. Theoretical and Applied Genetics, 107, 1266–1270.
  • Arabnezhad, H., Bahar, M., Mohammadi, H. R. and Latifian, M. (2012). Development, characterization and use of microsatellite markers for germplasm analysis in date palm (Phoenix dactylifera L.). Scientia Horticulturae, 134, 150–156.
  • Baaziz, M. and Saaidi, M. (1988). Preliminary identification of date palm cultivars by esterase isoenzymes and peroxidase activities. Canadian Journal of Botany, 66, 89–93.
  • Barrow, S. C. (1998). A monograph of Phoenix L. (Palmae: Coryphoideae). Kew Bulletin, 53, 513–575.
  • Billote, N., Marseilla, N., Brottier, P., Noyer, J. L., JACQUE-Moud Collet, J. P., Moreau, C., Couvreur, T., Chevallier, M. H., Pintaud, J. C. and Risterucci, A. M. (2004). Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.): characterization, utility across the genus Phoenix and in other palm genera. Molecular Ecology Notes, 4, 256–258.
  • Bryant, D. and Moulton, V. (2004). Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution, 21, 255–265.
  • Chao, C. T. and Krueger, R. R. (2007). The date palm (Phoenix dactylifera L.): overview of biology, uses, and cultivation. HortScience, 45, 1077–1082.
  • Corniquel, B. and Mercier, L. (1997). Identification of date palm(Phoenix dactylifera L.) cultivars by RFLP: partial characterization of a cDNA probe that contains a sequence encoding a zinc finger motif. International Journal of Plant Science, 158, 152–156.
  • Diaz, S., Pire, C., Ferrer, J. and Bonete, M. J. (2003). Identification of Phoenix dactylifera L. varieties based on amplified fragment length polymorphism (AFLP) markers. Cellular and Molecular Biology Letters, 8, 891–899.
  • Doyle, J. J. and Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11–15.
  • Elhoumaizi, M. A., Saaidi, M., Oihabi, A. and Cilas, C. (2002). Phenotypic diversity of date-palm cultivars (Phoenix dactylifera L.) from Morocco. Genetic Resources and Crop Evolution, 49, 483–490.
  • Elmeer, K., Sarwath, H., Malek, J., Baum, M. and Hamwieh,A. (2011). New microsatellite markers for assessment of genetic diversity in date palm (Phoenix dactylifera L.). Biotechnology, 1, 91–97.
  • Elshibli, S. and Korpelainen, H. (2008). Microsatellite markers reveal high genetic diversity in date palm (Phoenix dactylifera L.) germplasm from Sudan. Genetica, 134, 251–260.
  • Excoffier, L. and Lischer, H. E. L. (2010). Arlequin suite Ver. 3.5: A new series of programs to perform population genetic analyses under Linux and Windows. Molecular Ecology Resources, 10, 564–567.
  • Excoffier, L., Laval, G. and Schneider, S. (2005). Arlequin Ver. 3.0: an integrated software package for population genetic data analysis. Evolutionary Bioinformatics Online, 1, 47–50.
  • FAOSTAT (2011). Food and Agriculture Organization of the United Nations. http://faostat.fao.org/default.aspx (Accessed 12 August 2012).
  • Ferry, M., Gomez, S., Jimenez, E., Navarro, J., Ruiperez,E.and Villela, J. (2002). The date palm grove of Elche, Spain: Research for the sustainable preservation of a World heritage site. Palms, 46, 139–148.
  • Forouzan, S., Rahimirad, A., and Banafshechin, E. (2012). Survey of Iranian date palm concentrate chemical characteristics. Middle East Journal of Scientific Research, 12, 1009–1011.
  • Haider, N., Nabulsi, I. and Nizar, M. (2012). Phylogenetic relationships among date palm (Phoenix dactylifera L.) cultivars in Syria using RAPD and ISSR markers. Journal of Plant Biology Research, 1, 12–24.
  • Hammadi, H., Vendramin, G. G. and Ferchichi, A. (2011). Microsatellite diversity among Tunisian date palm (Phoenix dactylifera L.) subpopulations. Pakistan Journal of Botany, 43, 1257–1264.
  • Hamza, H., Elbekkay, M., BEN Abederrahim, M. A. and Ferchichi, A. (2011). Molecular and morphological analyses of date palm (Phoenix dactylifera L.) sub-populations in southern Tunisia. Spanish Journal of Agricultural Research, 9, 484–493.
  • Huson, D. H. and Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254–267.
  • Jubrael, J., Udupa, S. and Baum, M. (2005). Assessment of AFLPbased genetic relationships among date palm (Phoenix dactylifera L.) varieties of Iraq. Journal of the American Society for Horticultural Science, 130, 442–447.
  • Karim, K., Chokri, B., Amel, S., Wafa, H., Richid, H. and NOURE-Dine, D. (2010). Genetic diversity of Tunisian date palm germplasm using ISSR markers. International Journal of Botany, 6, 182–186.
  • Khanam, S., Sham, A., Bennetzen, J. L. and Aly, M. A. M. (2012). Analysis of molecular marker-based characterization and genetic variation in date palm (Phoenix dactylifera L.). Australian Journal of Crop Science, 6, 1236–1244.
  • Khierallah, H., Bader, S., Baum, M. and Hamwieh, A. (2011). Assessment of genetic diversity for some Iraqi date palms (Phoenix dactylifera L.) using amplified fragment length polymorphism (AFLP) markers. African Journal of Biotechnology, 10, 9570–9576.
  • Liu, K. J. and Muse, S. V. (2005). PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 21, 2128–2129.
  • Majourhat, K., Medraoui, K. B. L. and Baaziz, M. (2002). Diversity of leaf peroxidases in date palm (Phoenix dactylifera L.) as revealed in an example of marginal (seedling derived) palm groves. Scientia Horticulturae, 95, 31–38.
  • Mirbabaee, S., Mardi,A., Mahmoodi, P., Pirseyedi,S.M.,Abbasi, A., Farsi, M., Soleimani, H., Bakhshikhaniki, G., MOHAGHERI Naraghi, S., Zeinolabedini, M. and KHAYAM Nekouei, S. M. (2011). Development of new microsatellite markers from an enriched genomic library of date palm (Phoenix dactylifera L.). Journal of Horticultural Science & Biotechnology, 86, 539–541.
  • Nixon, R. W. (1951). The date palm: “Tree of Life” in the subtropical deserts. Economic Botany, 5, 274–301.
  • Nybom, H. (2004). Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Molecular Ecology, 13, 1143–1155.
  • Paradis, E. (2010) PEGAS: an R package for population genetics with an integrated modular approach. Bioinformatics, 26, 419–420.
  • Rhouma-Chatti, S., Dakhlaoui Dkhil, S., Ould Mohamed Salem, A., Zehdi Azouzi, S., Rhouma, A., Marrakchi, M. and Trifi, M. (2008). Genetic diversity and phylogenic relationships in date-palms (Phoenix dactylifera L.) as assessed by random amplified microsatellite polymorphism markers (RAMPOs). Scientia Horticulturae, 117, 53–57.
  • Rhouma-Chatti, S., Baraket, G., Dakhlaoui Dkhil, S., Zehdi Azouzi, S. and Trifi, M. (2011). Molecular research on the genetic diversity of Tunisian date palm (Phoenix dactylifera L.) using the random amplified microsatellite polymorphism (RAMPO) and amplified fragment length polymorphism (AFLP) methods. African Journal of Biotechnology, 10, 10352–10365.
  • Sakka, H., Zehdi, S., Ould Mohamed Salem, A., Rhouma, A., Marrakchi, M. and Trifi, M. (2004). Genetic polymorphism of plastid DNA in Tunisian date palm germplasm (Phoenix dactylifera L.) detected with PCR RFLP. Genetic Resources of Crop Evolution, 51, 479–487.
  • Salem, A. O. M., Trifi, M., Rhouma, A. and Marrakchi, M. (2001). Genetic inheritance analyses of four enzymes in date palm (Phoenix dactylifera L.). Genetic Resources Crop Evolution, 48, 361–368.
  • Sedra, H., Lashermes, P., Trouslot, P., Combes, M. C. and Hamon, S. (1998). Identification and genetic diversity analysis of date palm (Phoenix dactylifera L.) cultivars from Morocco using RAPD markers. Euphytica, 103, 75–82.
  • Weber, J. L. and May, P. E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. American Journal of Human Genetics, 44, 388–396.
  • Wrigley, G. (1995). Date palm (Phoenix dactylifera L.). In: The Evolution of Crop Plants. (Smartt, J. and Simmonds, N.W., Eds.). Longman Publications, London, UK. 399–403.
  • Zaid, A. and DE Wet, P. F. (2002). Date palm propagation. In: Date Palm Cultivation. (Zaid, A., Ed.). Food and Agriculture Organisation of the United Nations, Rome, Italy. 73–105.
  • Zaid, A., DE-Wet,P.F.,Djerbi, M. and Oihabi, A. (2002). Diseases and pests of date palm. In: Date Palm Cultivation. (Zaid, A., Ed.). Food and Agriculture Organisation of the United Nations, Rome, Italy. 227–242.
  • Zehdi, S., Sakka, H., Rhouma, A., Ould Mohammad Salem,A., Marrakchi, M. and Trifi, M. (2004a). Analysis of Tunisian date palm germplasm using simple sequence repeat primers. African Journal of Biotechnology, 3, 215–219.
  • Zehdi, S., Trifi, M., Billote, N., Marrakchi, M. and Pintaud,J.C. (2004b). Genetic diversity of Tunisian date palms (Phoenix dactylifera L.) revealed by nuclear microsatellite polymorphism. Hereditas, 141, 278–287.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.