Identification of reference genes for real-time quantitative polymerase chain reaction based gene expression studies on various Olive (Olea europaea L.) tissues

References

• Barsalobres-Cavallari, C.F., Severino, F.E., Maluf, M.P., & Maia, I.G. (2009). Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions. BMC Molecular Biology, 10, 1.
   PubMed Web of Science ®Google Scholar
• Brunner, A.M., Yakovlev, I.A., & Strauss, S.H. (2004). Validating internal controls for quantitative plant gene expression studies. BMC Plant Biology, 4, 14.
   PubMedGoogle Scholar
• Chaouachi, M., Giancola, S., Romaniuk, M., Laval, V., Bertheau, Y., & Brunel, D. (2007). A strategy for designing multi-taxa specific reference gene systems. example of application––Ppi Phosphofructokinase (ppi-PPF) used for the detection and quantification of three taxa: Maize (Zea mays), Cotton (Gossypium hirsutum) and Rice (Oryza sativa). Journal of Agricultural and Food Chemistry, 55, 8003–8010.
   PubMed Web of Science ®Google Scholar
• Czechowski, T. (2005). Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis. Plant Physiology, 139, 5–17.
   PubMed Web of Science ®Google Scholar
• de la Rosa, R., Arias-Calderón, R., Velasco, L., & León, L. (2016). Early selection for oil quality components in olive breeding progenies. European Journal of Lipid Science and Technology, 118, 1160–1167.
   Web of Science ®Google Scholar
• Expósito-Rodríguez, M., Borges, A.A., Borges-Pérez, A., & Pérez, J.A. (2008). Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. BMC Plant Biology, 8, 131.
   PubMed Web of Science ®Google Scholar
• Georgiadou, E.C., Goulas, V., Ntourou, T., Manganaris, G.A., Kalaitzis, P., & Fotopoulos, V. (2016). Regulation of on-tree vitamin E biosynthesis in olive fruit during successive growing years: The impact of fruit development and environmental cues. Frontiers in Plant Science, 7, 1656.
   PubMed Web of Science ®Google Scholar
• Haberman, A., Bakhshian, O., Cerezo-Medina, S., Paltiel, J., Adler, C., Ben-Ari, G., … Samach, A. (2017). A possible role for flowering locus T-encoding genes in interpreting environmental and internal cues affecting olive (Olea europaea L.) flower induction. Plant, Cell & Environment, 7, 1–18.
   Google Scholar
• Hellemans, J., Mortier, G., De Paepe, A., Speleman, F., & Vandesompele, J. (2007). qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biology, 8, R19.
   PubMed Web of Science ®Google Scholar
• Hoerndli, F.J., Toigo, M., Schild, A., Götz, J., & Day, P.J. (2004). Reference genes identified in SH-SY5Y cells using custom-made gene arrays with validation by quantitative polymerase chain reaction. Analytical Biochemistry, 335, 30–41.
   PubMed Web of Science ®Google Scholar
• Lavee, S. (1990). Aıms, methods, and advances in breeding of new olive (Olea europaea L.) cultivars. In Acta horticulturae (pp. 23–36). Leuven, Belgium: International Society for Horticultural Science (ISHS). doi:10.17660/ActaHortic.1990.286.1
   Google Scholar
• Mallona, I., Lischewski, S., Weiss, J., Hause, B., & Egea-Cortines, M. (2010). Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida. BMC Plant Biology, 10, 4.
   PubMed Web of Science ®Google Scholar
• Maloukh, L., Matousek, J., Van Bockstaele, E., & Roldán-Ruiz, I. (2009). Housekeeping gene selection for real time-PCR normalization in female hop (Humulus lupulus L.) tissues. Journal of Plant Biochemistry and Biotechnology, 18, 53–58.
   Web of Science ®Google Scholar
• Nicot, N., Hausman, J.-F., Hoffmann, L., & Evers, D. (2005). Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. Journal of Experimental Botany, 56, 2907–2914.
   PubMed Web of Science ®Google Scholar
• Nonis, A., Vezzaro, A., & Ruperti, B. (2012). Evaluation of RNA extraction methods and identification of putative reference genes for real-time quantitative polymerase chain reaction expression studies on olive (Olea europaea L.) fruits. Journal of Agricultural and Food Chemistry, 60, 6855–6865.
   PubMed Web of Science ®Google Scholar
• Padilla, M.N., Hernández, M.L., Sanz, C., & Martínez-Rivas, J.M. (2009). Functional characterization of two 13-lipoxygenase genes from olive fruit in relation to the biosynthesis of volatile compounds of virgin olive oil. Journal of Agricultural and Food Chemistry, 57, 9097–9107.
   PubMed Web of Science ®Google Scholar
• Pfaffl, M.W., Tichopad, A., Prgomet, C., & Neuvians, T.P. (2004). Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper – Excel-based tool using pair-wise correlations. Biotechnology Letters, 26, 509–515.
   PubMed Web of Science ®Google Scholar
• Radonic, A., Thulke, S., Mackay, I.M., Landt, O., Siegert, W., & Nitsche, A. (2004). Guideline to reference gene selection for quantitative real-time PCR. Biochemical and Biophysical Research Communications, 313, 856–862.
   PubMed Web of Science ®Google Scholar
• Rallo, L. (2014). Breeding oil and table olives for mechanical harvesting in Spain. HortTechnology, 24, 295–300.
   Web of Science ®Google Scholar
• Ray, D.L., & Johnson, J.C. (2014). Validation of reference genes for gene expression analysis in olive (Olea europaea) mesocarp tissue by quantitative real-time RT-PCR. BMC Research Notes, 7, 304.
   PubMedGoogle Scholar
• Resetic, T., Stajner, N., Bandelj, D., Javornik, B., & Jakse, J. (2013). Validation of candidate reference genes in RT-qPCR studies of developing olive fruit and expression analysis of four genes involved in fatty acids metabolism. Molecular Breeding, 32, 211–222.
   Web of Science ®Google Scholar
• Rugini, E., Cristofori, V., & Silvestri, C. (2016). Genetic improvement of olive (Olea europaea L.) by conventional and in vitro biotechnology methods. Biotechnology Advances, 34, 687–696.
   PubMed Web of Science ®Google Scholar
• Schmid, H., Cohen, C.D., Henger, A., Irrgang, S., Schlöndorff, D., & Kretzler, M. (2003). Validation of endogenous controls for gene expression analysis in microdissected human renal biopsies. Kidney International, 64, 356–360.
   PubMed Web of Science ®Google Scholar
• Sebastiani, L., & Busconi, M. (2017). Recent developments in olive (Olea europaea L.) genetics and genomics: Applications in taxonomy, varietal identification, traceability and breeding. Plant Cell Reports, 1–16. doi:10.1007/s00299-017-2145-9
   Web of Science ®Google Scholar
• Secchi, F., Lovisolo, C., & Schubert, A. (2007). Expression of OePIP2.1 aquaporin gene and water relations of Olea europaea twigs during drought stress and recovery. Annals of Applied Biology, 150, 163–167.
   Web of Science ®Google Scholar
• Silveira, É.D., Alves-Ferreira, M., Guimarães, L.A., da Silva, F.R., & de Carneiro, V.T.C. (2009). Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizantha. BMC Plant Biology, 9, 84.
   PubMed Web of Science ®Google Scholar
• Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A., & Speleman, F. (2002). Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology, 3. doi:10.1186/gb-2002-3-7-research0034
   PubMed Web of Science ®Google Scholar
• Xie, F., Sun, G., Stiller, J.W., & Zhang, B. (2011). Genome-wide functional analysis of the cotton transcriptome by creating an integrated EST database. PLoS One, 6, e26980.
   PubMed Web of Science ®Google Scholar
• Yang, H., Liu, J., Huang, S., Guo, T., Deng, L., & Hua, W. (2014). Selection and evaluation of novel reference genes for quantitative reverse transcription PCR (qRT-PCR) based on genome and transcriptome data in Brassica napus L. Gene, 538, 113–122.
   PubMed Web of Science ®Google Scholar
• Zhu, J., Zhang, L., Li, W., Han, S., Yang, W., & Qi, L. (2013). Reference gene selection for quantitative real-time PCR normalization in caragana intermedia under different abiotic stress conditions. Plos One, 8, 1–10.
   Web of Science ®Google Scholar